Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05641 and BPUM_3338
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_05641___ywlE.1.24716.seq
# -bsequence dna-align/BPUM_3338___ywlE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05641___ywlE-BPUM_3338___ywlE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05641___ywlE-BPUM_3338___ywlE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05641___ywlE
# 2: BPUM_3338___ywlE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 497
# Identity: 316/497 (63.6%)
# Similarity: 316/497 (63.6%)
# Gaps: 82/497 (16.5%)
# Score: 886.5
#
#
#=======================================
BSNT_05641___ 1 ATGGATATTATTTTTGTCTGTACTGGAAATACGTGCCGCAGCCCAATGGC 50
|||.|.||..|.|||||.|||||.||||||||.|||.|.||.||.|||||
BPUM_3338___y 1 ATGAAAATCTTATTTGTTTGTACGGGAAATACATGCAGAAGTCCGATGGC 50
BSNT_05641___ 51 TGAGGCGCTTTTTAAATCAATTGCAGAA-ATGGAAGGGCTGA-ATGTCAA 98
|.|.||.||||||...|||||||||.|| || ||.||.|.| |.||||.
BPUM_3338___y 51 TCAAGCCCTTTTTGCTTCAATTGCACAAGAT--AAAGGTTTAGAGGTCAC 98
BSNT_05641___ 99 TGTCCGCTCGGCAGGCGTGTTTGCTTC----GCCTAATGGGAAAGCGACG 144
|||....||.||.|||.|.|||||.|| || ||||||.||..||
BPUM_3338___y 99 TGTGAAATCAGCGGGCATTTTTGCCTCAGATGC----TGGGAAGGCTTCG 144
BSNT_05641___ 145 CCTCATGCAGTCGAAGCGCTGTTTGAAAAACACATTGCCCTTAATCATGT 194
|||||.|||||||||||..|.|||||.|||..||||.|.||.|||||
BPUM_3338___y 145 CCTCAAGCAGTCGAAGCATTATTTGAGAAAAGCATTCCGCTGAATCA--- 191
BSNT_05641___ 195 GTCTTCTCCATTAACTGA-AGA------ACTGATGGAATCGGCTGATTTG 237
.|||||..|| .|||||| ||| .|||...||| |||||||..
BPUM_3338___y 192 CTCTTCAGCA-AAACTGACAGAGGATCTTCTGCGAGAA---GCTGATTAC 237
BSNT_05641___ 238 GTTCTGGCTATGACCCAT-CAGCACAAACAGATCATTGCCAGCCAATTTG 286
|||.|..|.|||| |||| ||.||.||||||.|.|||| ||
BPUM_3338___y 238 GTTTTCACCATGA-CCATGCAACATAAACAGTTGATTG----------TG 276
BSNT_05641___ 287 G-ACGTTAT---CGTGATAAAG------TGTTTACGTTAAAAGAATATGT 326
| ||..||| |.||..|||| ..||.||..||||.||||..|.
BPUM_3338___y 277 GAACAATATGCACATGCAAAAGACAAGACCTTCACTCTAAAGGAATTCGC 326
BSNT_05641___ 327 TACAG--GCAGCCATGGTGATGTCAT-CGATCCGTTCGGCGG------CT 367
.|||| |||| |.|||||||| || ||||||.|||||.|| .|
BPUM_3338___y 327 GACAGGAGCAG--AAGGTGATGT-ATCCGATCCATTCGGAGGTAGCCTGT 373
BSNT_05641___ 368 CAATTGACATCTATAAACAAACGCGAGATGAGCTTGAAGAGCTT-CTTCG 416
|..|| |||.|..||||.||.||||||||||||| |.|| ||.|.
BPUM_3338___y 374 CTGTT------TATCAGGAAACACGTGATGAGCTTGAAG-GATTGCTCCA 416
BSNT_05641___ 417 GCAGCTGGC----AAAACAGCTGAAAAAAGACCG------CAGATAA 453
.|||||||| ||| .|||||||.||.|| |..||||
BPUM_3338___y 417 TCAGCTGGCTGAGAAA----TTGAAAAAGGATCGGACATCCTCATAA 459
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