Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05635 and BPUM_3334
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence dna-align/BSNT_05635___upp.1.24716.seq
# -bsequence dna-align/BPUM_3334___upp.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05635___upp-BPUM_3334___upp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05635___upp-BPUM_3334___upp.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05635___upp
# 2: BPUM_3334___upp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 631
# Identity: 504/631 (79.9%)
# Similarity: 504/631 (79.9%)
# Gaps: 2/631 ( 0.3%)
# Score: 2000.0
#
#
#=======================================
BSNT_05635___ 1 ATGGGAAAGGTTTATGTATTTGATCATCCTTTAATTCAGCACAAGCTGAC 50
||||.|||||||||||||||||||||.||..|.|||||.|||||.||.||
BPUM_3334___u 1 ATGGCAAAGGTTTATGTATTTGATCACCCGCTTATTCAACACAAACTTAC 50
BSNT_05635___ 51 ATATATACGGAATGAAAATACAGGTACGAAGGATTTTAGAGAGTTAGTAG 100
||||||.||..|.|...|||||||.||.||.||.|||||||||.||||.|
BPUM_3334___u 51 ATATATTCGTGACGTTCATACAGGAACAAAAGAATTTAGAGAGCTAGTGG 100
BSNT_05635___ 101 ATGAAGTGGCTACACTCATGGCATTTGAAATTACCCGCGATCTTCCTCTG 150
|||||||.||.|||.|.||||||||||||||.||..|.|||||.||.||.
BPUM_3334___u 101 ATGAAGTCGCAACATTAATGGCATTTGAAATCACAAGAGATCTACCGCTT 150
BSNT_05635___ 151 GAAGAAGTGGATATCAATACACCGGTTCAGGCTGCGAAATCGAAAGTCAT 200
|||||.||.|||.|..|.|||||.||.||.|..||.|||||.||.||.||
BPUM_3334___u 151 GAAGAGGTAGATGTAGAAACACCTGTACAAGTAGCAAAATCAAACGTGAT 200
BSNT_05635___ 201 CTCAGGGAAAAAACTCGGAGTGGTTCCTATCCTCAGAGCAGGATTGGGAA 250
|||||||||.||||||||.||.||.||.||..|.||||||||..|.||||
BPUM_3334___u 201 CTCAGGGAAGAAACTCGGTGTTGTGCCAATTTTAAGAGCAGGTCTTGGAA 250
BSNT_05635___ 251 TGGTTGACGGCATTTTAAAGCTGATTCCTGCGGCAAAAGTGGGACATGTC 300
||||.|||||.|||||.||.||.|||||.||.||.|||||||||||||||
BPUM_3334___u 251 TGGTGGACGGGATTTTGAAACTCATTCCAGCTGCTAAAGTGGGACATGTC 300
BSNT_05635___ 301 GGCCTTTACCGTGATCCAGAAACCTTAAAACCCGTGGAATACTATGTCAA 350
||..|.|||||||||||..||||.||||||||.||.|||||.|||||.||
BPUM_3334___u 301 GGTTTATACCGTGATCCGAAAACATTAAAACCTGTTGAATATTATGTGAA 350
BSNT_05635___ 351 GCTTCCTTCTGATGTGGAAGAGCGTGAATTCATCGTGGTTGACCCGATGC 400
||||||.|||||||||||||||||||||||.|||||.||.||.||.||||
BPUM_3334___u 351 GCTTCCATCTGATGTGGAAGAGCGTGAATTTATCGTAGTAGATCCAATGC 400
BSNT_05635___ 401 TCGCTACAGGCGGTTCCGCAGTTGAAGCCATT-CACAGCCTTAAAAAACG 449
|.||.||.||.|||||.|||||.|||| |||| .|||||.|.||||||||
BPUM_3334___u 401 TTGCAACTGGTGGTTCAGCAGTCGAAG-CATTAAACAGCTTGAAAAAACG 449
BSNT_05635___ 450 CGGTGCGAAAAATATCCGTTTCATGTGTCTTGTAGCAGCGCCGGAGGGTG 499
|||.||||||||.||.||.|||||||||||..|.||.||.||.||.||||
BPUM_3334___u 450 CGGGGCGAAAAACATTCGCTTCATGTGTCTGATTGCTGCTCCTGAAGGTG 499
BSNT_05635___ 500 TGGAAGAATTGCAGAAGCATCATTCGGACGTTGATATTTACATTGCGGCG 549
|.||||||.||||.|||||.|||.|.||.||||||||.||||||||.||.
BPUM_3334___u 500 TAGAAGAAATGCAAAAGCACCATCCTGATGTTGATATCTACATTGCAGCA 549
BSNT_05635___ 550 CTAGATGAAAAATTAAATGAAAAAGGATATATTGTTCCAGGTCTCGGAGA 599
.|||||||.||||||||.||||||||.||.|||.|.||||||||.||.||
BPUM_3334___u 550 TTAGATGAGAAATTAAACGAAAAAGGTTACATTATCCCAGGTCTTGGTGA 599
BSNT_05635___ 600 TGCTGGTGACCGCATGTTTGGAACAAAATAA 630
|||.||||||||.||||.||||||.||||||
BPUM_3334___u 600 TGCCGGTGACCGTATGTATGGAACGAAATAA 630
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