Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05627 and BPUM_3330

See Amino acid alignment / Visit BSNT_05627 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:13
# Commandline: needle
#    -asequence dna-align/BSNT_05627___atpF.1.24716.seq
#    -bsequence dna-align/BPUM_3330___atpF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05627___atpF-BPUM_3330___atpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05627___atpF-BPUM_3330___atpF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05627___atpF
# 2: BPUM_3330___atpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 529
# Identity:     389/529 (73.5%)
# Similarity:   389/529 (73.5%)
# Gaps:          32/529 ( 6.0%)
# Score: 1383.0
# 
#
#=======================================

BSNT_05627___      1 ATGTCTCAATTACCACTTGAACTAGGA--TTGTCGTTTAACGGCGGAGAT     48
                     ||||||||.||||||.|.|...|||||  ..|||  |.|||..|||||||
BPUM_3330___a      1 ATGTCTCAGTTACCAGTAGTTTTAGGAGCAGGTC--TAAACACCGGAGAT     48

BSNT_05627___     49 ATCCTGTTCCAACTGTTAGCTATG-TTAATCTTATTAGCGCTTCTGAAGA     97
                     |||.|.|||||..||.|.|||||| |.|.|||..|| ||.|||.|.||||
BPUM_3330___a     49 ATCATATTCCAGTTGATCGCTATGCTCATTCTGCTT-GCACTTTTAAAGA     97

BSNT_05627___     98 AA--TACGCTTTAGGGCCGCTATTAAACATAATGAAACAGCGTGAAGACC    145
                     ||  |.|||||.|  |||..|||||...||.|||||||||||||||||..
BPUM_3330___a     98 AATTTGCGCTTAA--GCCTTTATTAGGGATTATGAAACAGCGTGAAGATT    145

BSNT_05627___    146 ACATCGCTGGA---GAAATTACGTCTGCTGAAGAAAAAAATAAAG-----    187
                     |.||   .|||   ||||||.|...|||||||.|       ||||     
BPUM_3330___a    146 ATAT---AGGAAATGAAATTTCAAGTGCTGAACA-------AAAGCACGT    185

BSNT_05627___    188 --AAGCGCAGCAGCTTATTGAAGAGCAGCGCGTTCTT-TTAAAAGAAGCA    234
                       ||||..|..|||||.|||||||.||.||.| |||| ||.|||||||||
BPUM_3330___a    186 TCAAGCTGAAAAGCTTCTTGAAGAACAACGTG-TCTTATTGAAAGAAGCA    234

BSNT_05627___    235 AGACAGGAATCCCAAACTCTTATCGAAAACGCAAAGAAACTGGGAGAGAA    284
                     .|..|.|||||.||.||.||.||||||||.||.||.||..|.||.|||||
BPUM_3330___a    235 CGCGAAGAATCACATACACTCATCGAAAATGCGAAAAAGATTGGTGAGAA    284

BSNT_05627___    285 GCAAAAAGAAGAGATTATTCAGGCTGCACGTGCAGAATCTGAACGTCTGA    334
                     .||||||||||||||.|||||.||.||||||..|||.||.||.||..|||
BPUM_3330___a    285 ACAAAAAGAAGAGATCATTCAAGCAGCACGTCAAGAGTCAGAGCGCTTGA    334

BSNT_05627___    335 AAGAAGCAGCAAGAACTGAAATCGTGAAGGAAAAAGAACAGGCGGTTTCT    384
                     ||||..|.||.|||||||||||||||||.|||||||||||.||.||..||
BPUM_3330___a    335 AAGATTCTGCTAGAACTGAAATCGTGAAAGAAAAAGAACAAGCTGTGGCT    384

BSNT_05627___    385 GCTCTCCGTGAGCAAGTAGCGTCTCTTTCTGTCATGATTGCGTCGAAAGT    434
                     ||.||.||.|||||.||.||.||.||.|||||..|.|||||.||.|||||
BPUM_3330___a    385 GCACTGCGCGAGCAGGTTGCATCACTATCTGTACTTATTGCATCTAAAGT    434

BSNT_05627___    435 GATCGAAAAAGAACTGGATGAACAAGCGCAAGAGAAATTGATCCAGGACT    484
                     |||.||||.||||||.|||||.|||||.||||||||||||||.||.||.|
BPUM_3330___a    435 GATTGAAAGAGAACTTGATGAGCAAGCACAAGAGAAATTGATTCAAGAGT    484

BSNT_05627___    485 ATCTTAAAGAGGTAGGAGAAAGCCGATGA    513
                     ||||||||||||.|||.||||||||||||
BPUM_3330___a    485 ATCTTAAAGAGGCAGGCGAAAGCCGATGA    513


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