Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05626 and BPUM_3329
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence dna-align/BSNT_05626___atpH.1.24716.seq
# -bsequence dna-align/BPUM_3329___atpH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05626___atpH-BPUM_3329___atpH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05626___atpH-BPUM_3329___atpH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05626___atpH
# 2: BPUM_3329___atpH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 601
# Identity: 386/601 (64.2%)
# Similarity: 386/601 (64.2%)
# Gaps: 110/601 (18.3%)
# Score: 1151.0
#
#
#=======================================
BSNT_05626___ 1 ATGAGTG-GATCAGCTGTCTCTAAACGATATGCATCAGCTCTTTTTGATA 49
|||||.| || |...|||||||||.||.||.||.||.|||||||||||.|
BPUM_3329___a 1 ATGAGCGTGA-CTATTGTCTCTAAGCGTTACGCTTCTGCTCTTTTTGACA 49
BSNT_05626___ 50 TAGCCAATGAGTCCGCTCAGCTGAATCAAGTA---------GAAGAAGAG 90
|.|....||..|| .||.|| |||| |||.|||||
BPUM_3329___a 50 TCGTTCTTGCTTC--TTCGGC-------AGTAGACGAAACTGAAAAAGAG 90
BSNT_05626___ 91 CTAACTGTTGTAAAACAAGTATTTCAAAA---TGAAAAAGCGCTTAATGA 137
||.|.||...|.|||.||| |||.||| |||..|||...|.|||||
BPUM_3329___a 91 CTGAATGAGATCAAAAAAG---TTCTAAAGGCTGACCAAGAATTGAATGA 137
BSNT_05626___ 138 -----TGTGTTGAACCATCCGAAGATGCCGGCTGCGAAGA-AAAAAG-AG 180
| |||| |||||.|||||..|||| ||| |||||| ||
BPUM_3329___a 138 CTTTCT-TGTT----CATCCAAAGATTACGGC-----AGACAAAAAGAAG 177
BSNT_05626___ 181 C---TGATCCAAAATGCA-----TTT----GGCTCTTT-GTCACAGTCCG 217
| |||| |||| ||| || |.||| |.||||
BPUM_3329___a 178 CATTTGAT------TGCAGAAGCTTTCAAAGG-TGTTTCGACACA----- 215
BSNT_05626___ 218 TGCTTA----ATACGATTTTTCTTTTGATTGACCGCCATCGTGCCGCG-- 261
|| || |.||.||.|.|.|.||||||||||||...|| |.||
BPUM_3329___a 216 TG--TATTGCACACAATGTATTTATTGATTGACCGCGGACG---CACGAA 260
BSNT_05626___ 262 -ATTGTGCT-TGAGCTCACAGATGAGTTTATCAAACTCGCAAATGAGGCC 309
||| |.|| |||..|.||...|||||||.|.|||||.||||| |
BPUM_3329___a 261 TATT-TTCTCTGAAATGACGTCTGAGTTTGTGAAACTGGCAAA------C 303
BSNT_05626___ 310 CG------TCAAACAGAAGACGCAATCGTATATTCAGTGAAACCGCTGAC 353
|| .||||.|||.||.||.|||||.||.||||||||||||||||.
BPUM_3329___a 304 CGCACGAAACAAATAGACGATGCGATCGTGTACTCAGTGAAACCGCTGAG 353
BSNT_05626___ 354 GGATGCTGAAATGTTACCATTATCACAAGTGTTTGCAAAAAAGGCCGGAG 403
.|.|||||||||...|.|.|||||..||||.|||||.|||||.|||||||
BPUM_3329___a 354 TGGTGCTGAAATTCAATCTTTATCTGAAGTATTTGCCAAAAAAGCCGGAG 403
BSNT_05626___ 404 TCGCTTCAC-------TGAGAATCAGAAATG-AAGTGCAGACGGATTTAA 445
||.|.|||| ||| ||||| .|.|| |.|.||||.|||
BPUM_3329___a 404 TCACATCACTTCGTGTTGA-------AAATGTGATTG-ACAAGGATCTAA 445
BSNT_05626___ 446 TAGGCGGCATTAAAGTCCGCATTGGAAACCGGATTTATGACGGCAGCGTA 495
|||||||..|.|||.||||.||.||||||||.||||||||||||||.||.
BPUM_3329___a 446 TAGGCGGAGTGAAAATCCGTATCGGAAACCGCATTTATGACGGCAGTGTC 495
BSNT_05626___ 496 AGCGGGAAGCTTCAGCGCATTGAACGTCAATTAGCCGGGGAAAATCGATA 545
|||||.||||||...||||||||||||||..|.||.||.||||||||.||
BPUM_3329___a 496 AGCGGAAAGCTTTCCCGCATTGAACGTCAGCTTGCAGGCGAAAATCGTTA 545
BSNT_05626___ 546 G 546
|
BPUM_3329___a 546 G 546
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