Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05623 and BPUM_3327

See Amino acid alignment / Visit BSNT_05623 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:13
# Commandline: needle
#    -asequence dna-align/BSNT_05623___atpG.1.24716.seq
#    -bsequence dna-align/BPUM_3327___atpG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05623___atpG-BPUM_3327___atpG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05623___atpG-BPUM_3327___atpG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05623___atpG
# 2: BPUM_3327___atpG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 891
# Identity:     681/891 (76.4%)
# Similarity:   681/891 (76.4%)
# Gaps:          51/891 ( 5.7%)
# Score: 2544.0
# 
#
#=======================================

BSNT_05623___      1 TTGGCCTCATTACGCGATATTAAGTCAAGGATCACGTCAACGAAAAAAAC     50
                     ||||||||||||||||||||.|||||||||||||||||||||||||||.|
BPUM_3327___a      1 TTGGCCTCATTACGCGATATAAAGTCAAGGATCACGTCAACGAAAAAATC     50

BSNT_05623___     51 AAGTCAGATTACAAAAGCCATGCAGATGGTATCTGCGGCTAAGCTGAATC    100
                     .||||||||.||||||||.|||||.||||||||.||.||.||.|||||||
BPUM_3327___a     51 GAGTCAGATCACAAAAGCGATGCAAATGGTATCAGCTGCGAAACTGAATC    100

BSNT_05623___    101 GTGCTGAAAACAATGCAAAATCATTTGTGCCATATATGGATAAAATCC--    148
                     ||||||||||||||||.||.||.|||||.||.||.|||||.|||||||  
BPUM_3327___a    101 GTGCTGAAAACAATGCGAAGTCTTTTGTTCCTTACATGGAGAAAATCCAG    150

BSNT_05623___    149 -AAGAGGTTG-TGTCAAACGTCGGAAGAGTTTCCGGCAAC----GTAAAG    192
                      |||.||||| || |||   |||.||       |.|.|||    |..|||
BPUM_3327___a    151 GAAGTGGTTGCTG-CAA---TCGCAA-------CTGGAACAAGTGCTAAG    189

BSNT_05623___    193 CATCCGATGCTTC--TCAGCAGAGAAGTGAAAAAAACGGCATACCTTGTC    240
                     ||.||.|||||||  |||  |||...||.||.|||||.|.|||.||.|||
BPUM_3327___a    190 CACCCAATGCTTCTTTCA--AGACCTGTCAAGAAAACAGGATATCTCGTC    237

BSNT_05623___    241 ATTACGTCTGACCGCGGTCTTGCCGGCGCTTTTAACAGTTCGGTTTTACG    290
                     |||||.|||||.||.||.|||||.||..||||||||||.|||.||||.||
BPUM_3327___a    238 ATTACATCTGATCGAGGACTTGCAGGACCTTTTAACAGCTCGATTTTGCG    287

BSNT_05623___    291 GAATGCTTATCAGGCCATGCAAGAACGTCATCAGTCTAAG--GATGAGTA    338
                     ....|||||.||..||||.|||...|||||||||||  ||  |||||.||
BPUM_3327___a    288 TGCCGCTTACCAAACCATTCAATCTCGTCATCAGTC--AGCTGATGAATA    335

BSNT_05623___    339 TGCGGTGATTGCCATCGGAAGAGTGGGCCGTGATTTCTTTAAGAAACGGG    388
                     |||||||||||..||.||.|.|.|.||.||.||.|||||.||.||.||.|
BPUM_3327___a    336 TGCGGTGATTGTGATTGGTAAAATCGGACGCGACTTCTTCAAAAAGCGCG    385

BSNT_05623___    389 AGATTCCGATCATTTCCGAGTTAACAGGACTTGGGGATGAAGTGACGTTT    438
                     ..|||||..|.|||||.||..|||||||.|||||.||.|||||..|||||
BPUM_3327___a    386 GTATTCCAGTTATTTCTGAAGTAACAGGGCTTGGAGACGAAGTAGCGTTT    435

BSNT_05623___    439 ACAGAAATTAAAGATCTTGC---CCGTCAAACGATCCAAATGTT-TATAG    484
                     .|.||.||||||||..|.||   |.||   ||..|.|||||||| |.| |
BPUM_3327___a    436 GCTGATATTAAAGAATTAGCAAGCAGT---ACAGTTCAAATGTTCTCT-G    481

BSNT_05623___    485 ACGGTGCGTTTGATGAA--TTGCACCTTGTT-TATAACCATTTTGTCAGC    531
                     |.|..||||||||.|||  ||.||   |||| ||||||||.||||||||.
BPUM_3327___a    482 ATGAAGCGTTTGACGAACTTTACA---TGTTCTATAACCACTTTGTCAGT    528

BSNT_05623___    532 GCCATTACTCAAGAAGTAACGGAGAAAAAACTTCTGCCGTTATCTG--AT    579
                     ||||||.|.|||||||||||.|||||.|||.|..|||||.||.|.|  ||
BPUM_3327___a    529 GCCATTTCACAAGAAGTAACAGAGAAGAAATTATTGCCGCTAACGGACAT    578

BSNT_05623___    580 TTGGGCAGCGGCGGCGGAAAAAGAACG----GCGTCTTATGAATTTGAAC    625
                     ||.|||.||.|||.|....||..||||    ||.||||||||.|||||.|
BPUM_3327___a    579 TTCGGCCGCAGCGACACCTAATAAACGTTCCGCATCTTATGAGTTTGAGC    628

BSNT_05623___    626 CATCTGAAGAGGAGGTTCTGGAGGTTTTGCTTCCTCAATATGCAGAAAGC    675
                     |.||||||||.||..||||.||.|||.|.|||||||||||||||||.||.
BPUM_3327___a    629 CTTCTGAAGAAGAAATTCTTGAAGTTCTCCTTCCTCAATATGCAGAGAGT    678

BSNT_05623___    676 TTAATCTTCGGTGCGCTTCTTGACAGTAAAGCAAGTGAGCACGCTGCAAG    725
                     ||.||.||||||||||||||||||||||||||||||||.||.||||||||
BPUM_3327___a    679 TTGATTTTCGGTGCGCTTCTTGACAGTAAAGCAAGTGAACATGCTGCAAG    728

BSNT_05623___    726 AATGACGGCGATGAAAAATGCGACAGACAACGCGAAGGAACTTATCGATT    775
                     ||||||.||.|||||.|.|||.||||||||.||.||||||.|.|||||  
BPUM_3327___a    729 AATGACAGCAATGAAGAGTGCAACAGACAATGCAAAGGAATTGATCGA--    776

BSNT_05623___    776 CA--CTTTCGCTTTCTTACAACCGCGCTCGCCAAGCAGCCATCACACAAG    823
                     ||  ||..|.||.|||||||||||.|||||.||||||||.||.|||||||
BPUM_3327___a    777 CAGCCTGACACTCTCTTACAACCGTGCTCGTCAAGCAGCGATTACACAAG    826

BSNT_05623___    824 AAATTACGGAAATTGTCGGCGGAGCAGCCGCTTTAGAATAG    864
                     |.|||||.||||||||||||||||||||.||.|||||||||
BPUM_3327___a    827 AGATTACAGAAATTGTCGGCGGAGCAGCTGCCTTAGAATAG    867


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05623 and BPUM_3327

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
