Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05619 and BPUM_3324
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_05619___ywmA.1.24716.seq
# -bsequence dna-align/BPUM_3324___ywmA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05619___ywmA-BPUM_3324___ywmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05619___ywmA-BPUM_3324___ywmA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05619___ywmA
# 2: BPUM_3324___ywmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 567
# Identity: 341/567 (60.1%)
# Similarity: 341/567 (60.1%)
# Gaps: 120/567 (21.2%)
# Score: 879.0
#
#
#=======================================
BSNT_05619___ 1 ATGGTATACTTTAT-TGGAAAGGAGCTG-GCAAATGTGAATCATTCTTTT 48
|||.||||||...| ||| ||||||||| .||.|| ||||..||||||||
BPUM_3324___y 1 ATGATATACTGCGTGTGG-AAGGAGCTGAACACAT-TGAAAGATTCTTTT 48
BSNT_05619___ 49 TTTCAGCCTGAAAAGCAATATGGTGA-------GGA----------CCTG 81
|||| |.|.||.||| ||| |||
BPUM_3324___y 49 ------CCTG------ACTTTGTTGATTTGTACGGAGAACTGGTTCCCT- 85
BSNT_05619___ 82 CCAATTTTTGATCAGGAATGGGAAGCAATTGCATTCTATTATGATTATAG 131
|| ||||||||.||||||||.||.|||||.|||||.|.|||||||||
BPUM_3324___y 86 -CA---TTTGATCATGAATGGGAGGCCATTGCTTTCTACTTTGATTATAG 131
BSNT_05619___ 132 ACAGTCACAGATTGAAGAACTGAATG-AATTGTGTCAGTTTTTTAACATT 180
||||.|||||.|.|||||| |.|..| ||||||||||.|||..|||||||
BPUM_3324___y 132 ACAGACACAGCTAGAAGAA-TTAGCGCAATTGTGTCATTTTCATAACATT 180
BSNT_05619___ 181 TCT----CTTAC-CTATACGAGAGAAAGCCTTGAAGAGCTTGAAAACCTT 225
||| .|||| || ||| ||.|||||..|..||.|.|||...|||
BPUM_3324___y 181 TCTTTGGATTACTCT----GAG-GAGAGCCTGTATCAGTTAGAATCACTT 225
BSNT_05619___ 226 TATTTT----CAAAGTATA-CAAG-AGCTTTTGCTTGCTGATTGGAATCT 269
||.||| || |.|| |||| ||| ||.||||.||.|||||..|
BPUM_3324___y 226 TACTTTGATGCA---TTTACCAAGCAGC---TGTTTGCCGAATGGAAAAT 269
BSNT_05619___ 270 TCCTATTGAAGAATTCGAGAA--AATGATCAGTGTTTATCT--TATAGAT 315
.||.||.||.|.||| |||| .|||.|.|||||.|||.| .|.||.|
BPUM_3324___y 270 GCCAATAGATGCATT--AGAAGCGATGTTGAGTGTGTATATGGGAGAGGT 317
BSNT_05619___ 316 TG-----CGTGATTGCCCGCCATGAAGATGCTGAATGGGTTGTAAAACCT 360
|| |||.|| |||..|||||||||.|||||.|||...|||
BPUM_3324___y 318 TGTCCTTCGTCAT-------CATTCAGATGCTGACTGGGTGGTACGGCCT 360
BSNT_05619___ 361 TA---------TCCCTATAAAGACGGCGCTTATACACTTGGCTTTAGAAG 401
|| |||..||.|| |||||.||.||.||..|..|
BPUM_3324___y 361 TATATGGACTCTCCACATCAA---------TATACGCTGGGGTTGCGCCG 401
BSNT_05619___ 402 ACATCGCAAATCGTGGCATACAATGAATGC----CTGTGATGGTTTATA- 446
.||....|||.||||||||| |.|.|| .||.||....|||||
BPUM_3324___y 402 GCACAATAAAACGTGGCATA----GTACGCAGTTTTGCGAGCACTTATAT 447
BSNT_05619___ 447 CCTGCGCCAAGAAGAGGAT----CGCCCGCTGCTGTCGCTGTTTGATT-- 490
|.|| ||.||.||||| ..||...|| |||||.|||...|.|
BPUM_3324___y 448 CTTG----AAAAACAGGATTCTCATCCATATG-TGTCGATGTACCAATCG 492
BSNT_05619___ 491 CTCTTGTTCGTTCATAA 507
|||.|||...|| |||
BPUM_3324___y 493 CTCATGTCACTT--TAA 507
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