Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00382 and BPUM_3316
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:16
# Commandline: needle
# -asequence dna-align/BSNT_00382.1.24716.seq
# -bsequence dna-align/BPUM_3316___ybfB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00382-BPUM_3316___ybfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00382-BPUM_3316___ybfB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00382
# 2: BPUM_3316___ybfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1429
# Identity: 535/1429 (37.4%)
# Similarity: 535/1429 (37.4%)
# Gaps: 743/1429 (52.0%)
# Score: 865.0
#
#
#=======================================
BSNT_00382 1 ATGAAAAGA-----------CTG---CATT-------ATGC-GTGG--AT 26
|||||.|.| ||| |||| .||| |||| ||
BPUM_3316___y 1 ATGAACAAATCGAAAAATCGCTGGCTCATTGCAACAAGTGCTGTGGGAAT 50
BSNT_00382 27 CATCGTCTCCGTCACCTTTTTGATCTTATTGGCGGTTCAGGGGGTGCGGC 76
||| ||.||| |||||| |.|
BPUM_3316___y 51 -----------TCA-----TTTATC-TATTGG---------------GTC 68
BSNT_00382 77 TGT---CGTTTGGTGCGTTTGT--GGAGCCGTGGGAACGGCA--GTTTTC 119
||| ||.||||.|.||||.| |.|.||.| .||..|| .|||||
BPUM_3316___y 69 TGTTTACGCTTGGAGTGTTTTTACGAATCCTT---TACATCAAGCTTTTC 115
BSNT_00382 120 A------ATCGATAG----AAGCACCATCTCGCTGA-TTTCGACGGTGAG 158
| ||.||.|| |||| |||| |||| ||
BPUM_3316___y 116 AGTGGTCATTGACAGAAATAAGC---------CTGACTTTC-------AG 149
BSNT_00382 159 --------TTTTATTGTTTATGGCATATC-ACAGCCTGTGATCGG----- 194
||||||| |||| ||..|||| .||| ||.|.||.||
BPUM_3316___y 150 TATTGCTATTTTATT-TTTA-GGATTATCTGCAG-CTTTCATGGGGCATT 196
BSNT_00382 195 TCGGCTTG-------TGGACAAATGGGGTGCCCGGGCTGT---------- 227
||| ||| |||.|.|| |||...|.||.||.|
BPUM_3316___y 197 TCG--TTGAAAGGTATGGTCCAA--GGGCATCAGGACTCTTCTCAGCCGT 242
BSNT_00382 228 ----TTTGGCA-TGGAGTGCGTTACTGACAGGAGTCAGCATTTTCTTAAC 272
|||||.| ||| |.||||||| |||||.|||..||...|
BPUM_3316___y 243 TTTCTTTGGTATTGG--------AATGACAGG-GTCAGGATTCGCTGTCC 283
BSNT_00382 273 ATACCTTGTGACT---TCGCCTTGGCAGCTGTTTTTGCTTTATGGGCTGG 319
|.|..|..|.||| ||.||| ||.|||.| ||||| |
BPUM_3316___y 284 ACATGTCCTCACTCCCTCTCCT------CTATTTAT--TTTAT------G 319
BSNT_00382 320 GTGT-CTCGCTTGGAGTGGGAGGAGCGTCGAATGTGGC--GGCAAGTGTA 366
|||| ||||| ||||.|.|||..||.| |.||||..| .|||..||||
BPUM_3316___y 320 GTGTACTCGC-TGGAATAGGATTAGGG--GTATGTTACATTGCACCTGTA 366
BSNT_00382 367 -----TTGGTCGTCAATTGGTTC----AGCAAAAAGCGGGGACTAGC--- 404
|| |.||.||.|||||| |.|.|| |.|||||.||
BPUM_3316___y 367 TCAACTT--TAGTGAAATGGTTCCCGGACCGAA----GAGGACTTGCAAC 410
BSNT_00382 405 ---CTTTGGGACCATGGAAGCAGGCTTTGGCGCGGGGCAAATGCTTCTC- 450
|||.|..|..||| ||.||||| ...|||.||||
BPUM_3316___y 411 TGGCTTAGCTATTATG------GGTTTTGG--------GTTTGCGTCTCT 446
BSNT_00382 451 -GTTCCCGGCTCA------------CTCAT-------GTTGATCCATTG- 479
.||..|.||.|| ||||| ||.||| ||.|
BPUM_3316___y 447 TATTTGCAGCCCAATTATCCAATATCTCATTGAAAAAGTAGAT--ATCGC 494
BSNT_00382 480 -------GTTTAGCTGGAAGCTGACGGTTGTGGTGTTGGGACTGC----- 517
.||||..| |.||||.|.|.|
BPUM_3316___y 495 AAATACCTTTTACAT------------------TCTTGGAATTTCCTATT 526
BSNT_00382 518 ---TGTTAATCTTGAT----TGTCTTT--------CCGGCTGCGCTGCTG 552
||.|.||..|||| |.||||| ||..|..|.| |||
BPUM_3316___y 527 TTATGATCATGGTGATTTCATCTCTTTATTTATCACCACCAACAC--CTG 574
BSNT_00382 553 ATGCTGCGGAACAATCCTTCAG------AAAAGAATACAGAG------CC 590
|||..|...|||||| ||.|| ||||.||..||.|| ||
BPUM_3316___y 575 ATGACGTCAAACAAT--TTGAGGTGTTAAAAACAAATCAAAGAAAAATCC 622
BSNT_00382 591 GATAGGCGGACT--GGCTGCAT---------CAGAAAAAGAAACAGCACC 629
|| ||.|..|| |||.|||.|| |||...
BPUM_3316___y 623 ----------CTCAGGATTTATCACAGCTTACAGCAAATGA---AGCGAT 659
BSNT_00382 630 CAAAACAACA-----------------------GCTCTTT---------- 646
|||||||..| |||||||
BPUM_3316___y 660 CAAAACACGACGTTTTTATTATTTGTGGCTCATGCTCTTTATTAATATCA 709
BSNT_00382 647 CAGTGGCCGGGA-------TGTTTCGGATGAG--GCAATTC--------- 678
|| || ||||| |.|||| || ||| ||
BPUM_3316___y 710 CA-TG--CGGGATTGCCATTATTTC-----AGTAGCA--TCGCCTCTTGC 749
BSNT_00382 679 ------------TGGTT-----------------------CTTGAT---- 689
||||| ||||.|
BPUM_3316___y 750 TCAAGAAAGTGTTGGTTTCACTGCAGGTGCTGCAGCTACCCTTGTTGGCA 799
BSNT_00382 690 TTTTCCGT--TTTTGATCTGTGGATTTACGACCGTGGGGTTG-------- 729
||||..|| ||||.|| |.||||.|||.|...|||||
BPUM_3316___y 800 TTTTAGGTGCTTTTAAT-----GGTTTAGGACGGATTGGTTGGGCCTCTT 844
BSNT_00382 730 --------------------------ATGGATAC---------------- 737
|.|.||||
BPUM_3316___y 845 TCTCAGATTATATCGGAAGGCCGAATACGTATACAATCTTCTTTAGTATT 894
BSNT_00382 738 ---------------CCATT------TGATT--------CCG------TT 752
||.|| |.||| ||| ||
BPUM_3316___y 895 CAGCTCATTGCCTTTCCTTTACTCCCTTATTTAAAGGAACCGCTCGTCTT 944
BSNT_00382 753 TTC-----TCAT---GATCAT-------------------GGCTTT---T 772
||| |.|| |||||| ||.||| |
BPUM_3316___y 945 TTCAATCGTGATGGCGATCATTTATACGTGCTATGGAGGAGGGTTTGCCT 994
BSNT_00382 773 CAACGACA---------------------GTCACGA---------GTGC- 791
|||...|| |.||||| ||||
BPUM_3316___y 995 CAATCCCAGCTTATATTGGTGATTTATTTGGCACGAAACAACTTGGTGCC 1044
BSNT_00382 792 -------------TGCTGTCAG--------TCTGCTG-----GCAGG--C 813
|.|||.||| .|||||| ||||| |
BPUM_3316___y 1045 ATACACGGCTATATTCTGACAGCCTGGGCAGCTGCTGGTTTAGCAGGACC 1094
BSNT_00382 814 TTAATATTGCTGGCAT-CTTGCTGTCCGGAAT------TGTAG------- 849
||.||.|| ||| ||| |.|||||.|| .|||.
BPUM_3316___y 1095 TTTATTTT-----CATCCTT--TATCCGGGATATAACAGGTAACTACACG 1137
BSNT_00382 849 -------------------------------------------------- 849
BPUM_3316___y 1138 CAAAGTCTGATGGTGTTCTCTGGCTTATTTTTCATCGCTTTTATCATATC 1187
BSNT_00382 849 -------------------------------------------------- 849
BPUM_3316___y 1188 TCTTCTCATACGGAAGGATATTCAGCAGCTTAGAGAAACAAACCTTACTA 1237
BSNT_00382 849 ----------------------------- 849
BPUM_3316___y 1238 CTACTTCTTCTGTCTCATCCCGGCCTTAA 1266
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