Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05604 and BPUM_3315

See Amino acid alignment / Visit BSNT_05604 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_05604___fdhD.1.24716.seq
#    -bsequence dna-align/BPUM_3315___fdhD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05604___fdhD-BPUM_3315___fdhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05604___fdhD-BPUM_3315___fdhD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05604___fdhD
# 2: BPUM_3315___fdhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 850
# Identity:     553/850 (65.1%)
# Similarity:   553/850 (65.1%)
# Gaps:         122/850 (14.4%)
# Score: 1744.5
# 
#
#=======================================

BSNT_05604___      1 -------------TTGAACGATAAAGTAACTGCGGTCAGGGATGTATGGC     37
                                  ||     |.||||.|||                  |.
BPUM_3315___f      1 ATGAATCCTTCTGTT-----AAAAAGAAAC------------------GA     27

BSNT_05604___     38 GCTATGAAC----------AAGGGGAAATAA---GCAAAGTAGAAGACCG     74
                     |.|||..||          ||||..||.|.|   |||||..|||.||  .
BPUM_3315___f     28 GTTATTCACCAATACCGTGAAGGTCAATTTACTTGCAAAACAGATGA--A     75

BSNT_05604___     75 GATGGTGACGGAATTCCCTTTGACAGTGATACTGAATGGCAG-TGAATTT    123
                     |.||..|| .|||||.|||||.||.|||||..||||||| || .||||||
BPUM_3315___f     76 GTTGTAGA-AGAATTTCCTTTAACTGTGATCGTGAATGG-AGAGGAATTT    123

BSNT_05604___    124 GTGACGCTCGTTTGTACGCCTGAGCATATCGAAGAGCTTGTCATCGGATT    173
                     ||.||.||.||||||.|.||.||.|||.|..||||..|.||.|||||.||
BPUM_3315___f    124 GTAACACTTGTTTGTTCCCCAGATCATTTAAAAGAATTGGTGATCGGTTT    173

BSNT_05604___    174 TCTCGCATCAGAGGGTGTTATACGATTTCAAAAAGAAATTAAAAGGTTTA    223
                     |.|.||.|||||.||.||.||.||||||.||||.||.|||||||||||||
BPUM_3315___f    174 TTTAGCTTCAGAAGGCGTCATTCGATTTGAAAATGAGATTAAAAGGTTTA    223

BSNT_05604___    224 CAATAGATGAAAGTCTCGGTTTTGTATATGTCGACCTCGTTCACCC----    269
                     ||||||||||||||.|.||.||||..|||||.||..|.||||||.|    
BPUM_3315___f    224 CAATAGATGAAAGTATGGGCTTTGCCTATGTTGATTTAGTTCACTCAAGC    273

BSNT_05604___    270 -----TGAGACATTGGATCAAAAGGATTATACGAAACGGGTGATCGGCTC    314
                          |.||.|     ||||    ||||.|||.||.||||||||.||.||
BPUM_3315___f    274 GAATTTCAGTC-----ATCA----GATTTTACTAAGCGGGTGATTGGTTC    314

BSNT_05604___    315 ATGCTG-CGGAAAGGGCCGTCATTTTTATTTTCAGCAGGATGTCAAAACA    363
                     .||||| .|||||||| .|.|||||||||||||..||.|||||.||||||
BPUM_3315___f    315 TTGCTGTGGGAAAGGG-AGGCATTTTTATTTTCTCCAAGATGTGAAAACA    363

BSNT_05604___    364 GCCAAGACGGCTGTCAGCCA-------AATCAAGATATCGCCTGAGGCAT    406
                     ||.||.|       ||||||       |||.||.||.||..||||..|.|
BPUM_3315___f    364 GCAAAAA-------CAGCCATTGATCGAATTAACATTTCTGCTGATACTT    406

BSNT_05604___    407 GTCTGGCG-CTTATGAAA----GACATGCAGCAAGGGAGCGGGA-CGTTT    450
                     ||.| ||| ||.||||||    .|||.|.||.|||..|     | .||||
BPUM_3315___f    407 GTAT-GCGTCTAATGAAATCTTTACAAGAAGAAAGTCA-----ATTGTTT    450

BSNT_05604___    451 CAGGATACGGGAGGCGTCCATAATGCGGCGCTTTGCGACACAGAGAAGCT    500
                     ||..||||.||.|||||.||||||||.|..||.||.||.|||||.|||||
BPUM_3315___f    451 CAACATACTGGTGGCGTGCATAATGCTGGACTGTGTGATACAGAAAAGCT    500

BSNT_05604___    501 -----TCTGTTGATGCGCACCGATATCGGTCGGCACAACGCACTTGATAA    545
                          ||..|.||     ||.|||||.||..|.||.||.|||.|.|||||
BPUM_3315___f    501 ATTCATCACTAGA-----ACTGATATAGGAAGACATAATGCATTAGATAA    545

BSNT_05604___    546 ACTATACGGACACTG---CCTTC-TAAACGGGATGTCCG--TACGCGACA    589
                     |.|.||.|||.||||   .|||| |.||    || ||||  || |.||.|
BPUM_3315___f    546 AATCTATGGATACTGTTTACTTCATCAA----AT-TCCGCTTA-GAGATA    589

BSNT_05604___    590 AACTGATTGTGTTCAGCGGCAGAATCTCATCAGAGGTCCTGTTAAAAGCG    639
                     ||.|..|||||||.||||||.|.||.||||||||.||.|||||.||.||.
BPUM_3315___f    590 AAATTCTTGTGTTTAGCGGCCGGATATCATCAGAAGTTCTGTTGAAGGCA    639

BSNT_05604___    640 GCCAAAATCGGCGTGTCGATTGTCATTTCCAAATCGGCCCCGACGGAGCT    689
                     ||.|||.|.||.||||||||.|||||.||.|||||.||.||.||.|||||
BPUM_3315___f    640 GCAAAACTAGGAGTGTCGATCGTCATCTCAAAATCAGCACCTACTGAGCT    689

BSNT_05604___    690 TGCGATTCAAATGGCTGAAGAATTGAATATCACAGCGATTGGATTTGTCA    739
                     .||..||.|.|||||.||||||||.|||||||||.|..||||||||||||
BPUM_3315___f    690 GGCACTTAATATGGCAGAAGAATTAAATATCACAACAGTTGGATTTGTCA    739

BSNT_05604___    740 GAAACGGATCATTTAATGTATATACACACCCTGAGAGAATCAGGGGATAG    789
                     ||...|.|||.||||||.|.||.||.||||.|.||.|.||.|..|.||||
BPUM_3315___f    740 GAGGAGAATCTTTTAATATCTACACTCACCATCAGCGTATAACAGAATAG    789


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05604 and BPUM_3315

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
