Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00594 and BPUM_3311
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:23
# Commandline: needle
# -asequence dna-align/BSNT_00594.1.24716.seq
# -bsequence dna-align/BPUM_3311___yciC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00594-BPUM_3311___yciC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00594-BPUM_3311___yciC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00594
# 2: BPUM_3311___yciC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1225
# Identity: 487/1225 (39.8%)
# Similarity: 487/1225 (39.8%)
# Gaps: 569/1225 (46.4%)
# Score: 1557.5
#
#
#=======================================
BSNT_00594 1 ATGAAAAAG---ATTCCGGTTACCGTACTGAGCGGATATCTAGGTGCGGG 47
|||||.||| ||.||.|||||.|||.|.|||||.|.|.||||.||.||
BPUM_3311___y 1 ATGAATAAGCGAATACCCGTTACAGTATTAAGCGGTTTTTTAGGAGCTGG 50
BSNT_00594 48 AAAAACAAC---ATTGCTGAACAGCA--TTCTGCAAAATCGCGAAGGCTT 92
||||||||| ||| |.|.|| |.||.||||||||..||||.||
BPUM_3311___y 51 AAAAACAACCATATT-----AAATCATGTACTACAAAATCGTAAAGGGTT 95
BSNT_00594 93 GAAAATAGCGGTTATCGTAAACGATATGAGCGAGGTGAACATTGACGCGG 142
.|||.||||.||.||.||.||.||.||||||||..|.||.|||||.||.|
BPUM_3311___y 96 AAAAGTAGCTGTGATTGTTAATGACATGAGCGAAATTAATATTGATGCAG 145
BSNT_00594 143 GCTTGGTTAAGCAGGAAGGGGGCCTTTCCAGAACAGATGAAAAGCTTGTG 192
...|.||.||.||.|..||.|..||.||..||.|||||||.|||||.||.
BPUM_3311___y 146 AACTAGTCAAACAAGGCGGTGAGCTCTCTCGATCAGATGAGAAGCTAGTT 195
BSNT_00594 193 GAAATGTCAAACGGCTGCATTTGCTGCACGCTTCGCGAAGACTTATTAAT 242
|||.|.||.||.||.||.|||||||||||..|..|.|||||.||.|||||
BPUM_3311___y 196 GAATTATCTAATGGTTGTATTTGCTGCACATTAAGAGAAGATTTGTTAAT 245
BSNT_00594 243 TGAAGTTGAG---------AAG-CTGG-CAAAAGACGGACGGTTTGATTA 281
||||||.||| ||| |||| ||.| |||||||
BPUM_3311___y 246 TGAAGTAGAGCGCCTATGTAAGACTGGTCATA-----------TTGATTA 284
BSNT_00594 282 TATCGTCATCGAATCGACAGGAATCAGCGAACCGATCCCGGTGGCCCAGA 331
|||.|||||.||.||.|||||.||.||.||||||||.||.||.||.||.|
BPUM_3311___y 285 TATTGTCATTGAGTCTACAGGTATTAGTGAACCGATTCCAGTCGCGCAAA 334
BSNT_00594 332 CTTTCTCTTATATCGATGAAGAGATGGGAATCGATCTTACAAAATTCTGT 381
|||||||||||||.||||||||.|||||.||||||.|.|||...||.||.
BPUM_3311___y 335 CTTTCTCTTATATAGATGAAGAAATGGGCATCGATTTAACACGCTTTTGC 384
BSNT_00594 382 CAGCTGGATACGATGGTGACAGTGGTTGATGCCAACCGTTTTTGGCATGA 431
|..||.||.||||||||.||.||.||.|||||.||.|||||.|||...||
BPUM_3311___y 385 CGTCTAGACACGATGGTCACTGTTGTAGATGCGAATCGTTTCTGGACCGA 434
BSNT_00594 432 TTATCAGTCAGGCGAAAGCCTTCTGGACCGCAAAGAAGCATTGGGGGAAG 481
.|..||||||||.|||||.||..|.|||||.|||.||||..|....||.|
BPUM_3311___y 435 CTTCCAGTCAGGAGAAAGTCTATTAGACCGTAAACAAGCCGTTTCCGAGG 484
BSNT_00594 482 AGGATGAAAGAGAAATCGCCGACCTCTTGATCGATCAAATTGAGTTTTGC 531
|.||.|||.|||||||..||||..|..||||.|||||||||||.|||||.
BPUM_3311___y 485 ATGACGAACGAGAAATTTCCGATTTACTGATTGATCAAATTGAATTTTGT 534
BSNT_00594 532 GATGTACTGATCTTAAATAAATGTGATTTGGTCAGCGAGCA-----AGAG 576
||.||||||||..|.||||||||||||.|.|| |.|| |||.
BPUM_3311___y 535 GACGTACTGATTATCAATAAATGTGATCTAGT-----ATCAAACTCAGAA 579
BSNT_00594 577 CTCGAACAGCTTGAAAACGTTCTTCGTAAACTGCAGCCAAGAGC--CAAG 624
.|.||.|..|||||..|.||.||....|.|||.||.|||..||| |.|
BPUM_3311___y 580 TTAGACCGACTTGAGCATGTGCTGACAACACTTCAACCAGAAGCATCTA- 628
BSNT_00594 625 TTCATTCGCTG----TCAAA--GGAAATGTAAAACCGCAG-GAGATTTTG 667
|||| |.| ||||| ||.|| |||||.|| .|| ||.|||||.
BPUM_3311___y 629 -TCAT---CAGAACCTCAAAAGGGCAA-GTAAAGCC-AAGTGACATTTTA 672
BSNT_00594 668 CATACAGGGTTATTTAA--------------------------------- 684
.||||.||.|||||..|
BPUM_3311___y 673 AATACTGGTTTATTCGACTTTGAAAAGTCCAGTGCTTCTGCTGGCTGGAT 722
BSNT_00594 684 -------------------------------------------------- 684
BPUM_3311___y 723 TAAAGAAATCAACGCTGGGCATTCTCAGCATACGCCGGAAACAGAAGAAT 772
BSNT_00594 684 -------------------------------------------------- 684
BPUM_3311___y 773 ACAACATCTCATCCTTTGTTTATGAAAGAAGACTTCCTTTCCATACTAGC 822
BSNT_00594 684 -------------------------------------------------- 684
BPUM_3311___y 823 AGGTTAAATCATTGGTTAGATCAGATGCCAGAGCAAATCGTTCGCGCTAA 872
BSNT_00594 684 -------------------------------------------------- 684
BPUM_3311___y 873 AGGATTTACATGGCTTGCCACACATCATGATTTAACCATTTTAATTTCAC 922
BSNT_00594 684 -------------------------------------------------- 684
BPUM_3311___y 923 AGGCTGGAAAATCTGTTCAGATTGAACCAATTGCCTACTGGATTGCTGCC 972
BSNT_00594 684 -------------------------------------------------- 684
BPUM_3311___y 973 TTGCCTGAGCAAGAAAAAGCACAGATATTAAAGCAAGAACCAGAGCTTCT 1022
BSNT_00594 684 -------------------------------------------------- 684
BPUM_3311___y 1023 TGATGAGTGGGACGCAGAATTTGGTGACAGGCATACAAAACTTGTGTTTA 1072
BSNT_00594 684 -------------------------------------------------- 684
BPUM_3311___y 1073 TTGGTGTAGATTTACCTAAAGCAGATATCATTCGCACACTTGATCAATGC 1122
BSNT_00594 684 -------------------------------------------------- 684
BPUM_3311___y 1123 TTACTCACACATGAGGAATTTGATCAAGATTGGACTACGTTTGAAGACCC 1172
BSNT_00594 684 ------------------------- 684
BPUM_3311___y 1173 CTTTCAATGGAAAATCCAACATTAA 1197
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