Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00594 and BPUM_3311

See Amino acid alignment / Visit BSNT_00594 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:23
# Commandline: needle
#    -asequence dna-align/BSNT_00594.1.24716.seq
#    -bsequence dna-align/BPUM_3311___yciC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00594-BPUM_3311___yciC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00594-BPUM_3311___yciC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00594
# 2: BPUM_3311___yciC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1225
# Identity:     487/1225 (39.8%)
# Similarity:   487/1225 (39.8%)
# Gaps:         569/1225 (46.4%)
# Score: 1557.5
# 
#
#=======================================

BSNT_00594         1 ATGAAAAAG---ATTCCGGTTACCGTACTGAGCGGATATCTAGGTGCGGG     47
                     |||||.|||   ||.||.|||||.|||.|.|||||.|.|.||||.||.||
BPUM_3311___y      1 ATGAATAAGCGAATACCCGTTACAGTATTAAGCGGTTTTTTAGGAGCTGG     50

BSNT_00594        48 AAAAACAAC---ATTGCTGAACAGCA--TTCTGCAAAATCGCGAAGGCTT     92
                     |||||||||   |||     |.|.||  |.||.||||||||..||||.||
BPUM_3311___y     51 AAAAACAACCATATT-----AAATCATGTACTACAAAATCGTAAAGGGTT     95

BSNT_00594        93 GAAAATAGCGGTTATCGTAAACGATATGAGCGAGGTGAACATTGACGCGG    142
                     .|||.||||.||.||.||.||.||.||||||||..|.||.|||||.||.|
BPUM_3311___y     96 AAAAGTAGCTGTGATTGTTAATGACATGAGCGAAATTAATATTGATGCAG    145

BSNT_00594       143 GCTTGGTTAAGCAGGAAGGGGGCCTTTCCAGAACAGATGAAAAGCTTGTG    192
                     ...|.||.||.||.|..||.|..||.||..||.|||||||.|||||.||.
BPUM_3311___y    146 AACTAGTCAAACAAGGCGGTGAGCTCTCTCGATCAGATGAGAAGCTAGTT    195

BSNT_00594       193 GAAATGTCAAACGGCTGCATTTGCTGCACGCTTCGCGAAGACTTATTAAT    242
                     |||.|.||.||.||.||.|||||||||||..|..|.|||||.||.|||||
BPUM_3311___y    196 GAATTATCTAATGGTTGTATTTGCTGCACATTAAGAGAAGATTTGTTAAT    245

BSNT_00594       243 TGAAGTTGAG---------AAG-CTGG-CAAAAGACGGACGGTTTGATTA    281
                     ||||||.|||         ||| |||| ||.|           |||||||
BPUM_3311___y    246 TGAAGTAGAGCGCCTATGTAAGACTGGTCATA-----------TTGATTA    284

BSNT_00594       282 TATCGTCATCGAATCGACAGGAATCAGCGAACCGATCCCGGTGGCCCAGA    331
                     |||.|||||.||.||.|||||.||.||.||||||||.||.||.||.||.|
BPUM_3311___y    285 TATTGTCATTGAGTCTACAGGTATTAGTGAACCGATTCCAGTCGCGCAAA    334

BSNT_00594       332 CTTTCTCTTATATCGATGAAGAGATGGGAATCGATCTTACAAAATTCTGT    381
                     |||||||||||||.||||||||.|||||.||||||.|.|||...||.||.
BPUM_3311___y    335 CTTTCTCTTATATAGATGAAGAAATGGGCATCGATTTAACACGCTTTTGC    384

BSNT_00594       382 CAGCTGGATACGATGGTGACAGTGGTTGATGCCAACCGTTTTTGGCATGA    431
                     |..||.||.||||||||.||.||.||.|||||.||.|||||.|||...||
BPUM_3311___y    385 CGTCTAGACACGATGGTCACTGTTGTAGATGCGAATCGTTTCTGGACCGA    434

BSNT_00594       432 TTATCAGTCAGGCGAAAGCCTTCTGGACCGCAAAGAAGCATTGGGGGAAG    481
                     .|..||||||||.|||||.||..|.|||||.|||.||||..|....||.|
BPUM_3311___y    435 CTTCCAGTCAGGAGAAAGTCTATTAGACCGTAAACAAGCCGTTTCCGAGG    484

BSNT_00594       482 AGGATGAAAGAGAAATCGCCGACCTCTTGATCGATCAAATTGAGTTTTGC    531
                     |.||.|||.|||||||..||||..|..||||.|||||||||||.|||||.
BPUM_3311___y    485 ATGACGAACGAGAAATTTCCGATTTACTGATTGATCAAATTGAATTTTGT    534

BSNT_00594       532 GATGTACTGATCTTAAATAAATGTGATTTGGTCAGCGAGCA-----AGAG    576
                     ||.||||||||..|.||||||||||||.|.||     |.||     |||.
BPUM_3311___y    535 GACGTACTGATTATCAATAAATGTGATCTAGT-----ATCAAACTCAGAA    579

BSNT_00594       577 CTCGAACAGCTTGAAAACGTTCTTCGTAAACTGCAGCCAAGAGC--CAAG    624
                     .|.||.|..|||||..|.||.||....|.|||.||.|||..|||  |.| 
BPUM_3311___y    580 TTAGACCGACTTGAGCATGTGCTGACAACACTTCAACCAGAAGCATCTA-    628

BSNT_00594       625 TTCATTCGCTG----TCAAA--GGAAATGTAAAACCGCAG-GAGATTTTG    667
                      ||||   |.|    |||||  ||.|| |||||.|| .|| ||.|||||.
BPUM_3311___y    629 -TCAT---CAGAACCTCAAAAGGGCAA-GTAAAGCC-AAGTGACATTTTA    672

BSNT_00594       668 CATACAGGGTTATTTAA---------------------------------    684
                     .||||.||.|||||..|                                 
BPUM_3311___y    673 AATACTGGTTTATTCGACTTTGAAAAGTCCAGTGCTTCTGCTGGCTGGAT    722

BSNT_00594       684 --------------------------------------------------    684
                                                                       
BPUM_3311___y    723 TAAAGAAATCAACGCTGGGCATTCTCAGCATACGCCGGAAACAGAAGAAT    772

BSNT_00594       684 --------------------------------------------------    684
                                                                       
BPUM_3311___y    773 ACAACATCTCATCCTTTGTTTATGAAAGAAGACTTCCTTTCCATACTAGC    822

BSNT_00594       684 --------------------------------------------------    684
                                                                       
BPUM_3311___y    823 AGGTTAAATCATTGGTTAGATCAGATGCCAGAGCAAATCGTTCGCGCTAA    872

BSNT_00594       684 --------------------------------------------------    684
                                                                       
BPUM_3311___y    873 AGGATTTACATGGCTTGCCACACATCATGATTTAACCATTTTAATTTCAC    922

BSNT_00594       684 --------------------------------------------------    684
                                                                       
BPUM_3311___y    923 AGGCTGGAAAATCTGTTCAGATTGAACCAATTGCCTACTGGATTGCTGCC    972

BSNT_00594       684 --------------------------------------------------    684
                                                                       
BPUM_3311___y    973 TTGCCTGAGCAAGAAAAAGCACAGATATTAAAGCAAGAACCAGAGCTTCT   1022

BSNT_00594       684 --------------------------------------------------    684
                                                                       
BPUM_3311___y   1023 TGATGAGTGGGACGCAGAATTTGGTGACAGGCATACAAAACTTGTGTTTA   1072

BSNT_00594       684 --------------------------------------------------    684
                                                                       
BPUM_3311___y   1073 TTGGTGTAGATTTACCTAAAGCAGATATCATTCGCACACTTGATCAATGC   1122

BSNT_00594       684 --------------------------------------------------    684
                                                                       
BPUM_3311___y   1123 TTACTCACACATGAGGAATTTGATCAAGATTGGACTACGTTTGAAGACCC   1172

BSNT_00594       684 -------------------------    684
                                              
BPUM_3311___y   1173 CTTTCAATGGAAAATCCAACATTAA   1197


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