Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05575 and BPUM_3301
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_05575___nrgB.1.24716.seq
# -bsequence dna-align/BPUM_3301___nrgB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05575___nrgB-BPUM_3301___nrgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05575___nrgB-BPUM_3301___nrgB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05575___nrgB
# 2: BPUM_3301___nrgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 354
# Identity: 261/354 (73.7%)
# Similarity: 261/354 (73.7%)
# Gaps: 9/354 ( 2.5%)
# Score: 917.0
#
#
#=======================================
BSNT_05575___ 1 ATGAGCGGCCAAATGTTCAAGGTAGAAATTGTAACGCGTCCGGCAAATTT 50
|||| ||.||||||..||.||.||.|||||.||.|||||.||.|||||
BPUM_3301___n 1 ATGA---GCAAAATGTATAAAGTGGAGATTGTCACACGTCCAGCCAATTT 47
BSNT_05575___ 51 TGAAAAGCTGAAGCAGGAACTCGGAAAAATCGGAGTGACCTCTCTGACTT 100
.||||...|.|||...||.||.|||||.||.||.||.||.||..|.||.|
BPUM_3301___n 48 CGAAACATTAAAGGTAGAGCTTGGAAAGATTGGTGTCACTTCCATTACCT 97
BSNT_05575___ 101 TCTCCAATGTACACGGCTGCGGCCTTCAAAAAGCACATACGGAGCTCTAT 150
|.||.|||||||||||||||||..|.|||||.|.||||||.|||.|.|||
BPUM_3301___n 98 TTTCGAATGTACACGGCTGCGGTTTACAAAAGGGACATACAGAGTTATAT 147
BSNT_05575___ 151 CGAGGGGTAAAAATAGAAAGCAATGTATACGAGCGTTTAAAAATAGAAAT 200
||.||.||.||||..|||||||||||.|||||.||||||||.||.|||||
BPUM_3301___n 148 CGCGGCGTCAAAAAGGAAAGCAATGTGTACGAACGTTTAAAGATTGAAAT 197
BSNT_05575___ 201 TGTGGTCAGCAAGGTTCCTGTTGATCAAGTGACTGAGACCGCTAAAAGGG 250
.||..|||||.|.||.||||||||.||.||...|||.||.|||.|||.||
BPUM_3301___n 198 CGTCCTCAGCGAAGTACCTGTTGAACAGGTCGTTGAAACAGCTCAAAAGG 247
BSNT_05575___ 251 TGCT--GAAAACGGGATCACCGGGTGACGGTAAAATATTTGTCTATGAAA 298
|.|| |.|.|.|.|| |||.||.||.||.|||||.|||.|.|||||.|
BPUM_3301___n 248 TACTTCGTACAGGCGA--ACCAGGGGATGGGAAAATTTTTATATATGAGA 295
BSNT_05575___ 299 TCAG-CAATACGATCAACATCCGCACAGGCGAAGAAGGACCTGAAGCACT 347
| || .|||||.||||||||.||.|||||.|||||||||||||..||.||
BPUM_3301___n 296 T-AGAAAATACAATCAACATTCGGACAGGTGAAGAAGGACCTGCCGCCCT 344
BSNT_05575___ 348 TTAA 351
||||
BPUM_3301___n 345 TTAA 348
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