Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05575 and BPUM_3301

See Amino acid alignment / Visit BSNT_05575 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_05575___nrgB.1.24716.seq
#    -bsequence dna-align/BPUM_3301___nrgB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05575___nrgB-BPUM_3301___nrgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05575___nrgB-BPUM_3301___nrgB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05575___nrgB
# 2: BPUM_3301___nrgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 354
# Identity:     261/354 (73.7%)
# Similarity:   261/354 (73.7%)
# Gaps:           9/354 ( 2.5%)
# Score: 917.0
# 
#
#=======================================

BSNT_05575___      1 ATGAGCGGCCAAATGTTCAAGGTAGAAATTGTAACGCGTCCGGCAAATTT     50
                     ||||   ||.||||||..||.||.||.|||||.||.|||||.||.|||||
BPUM_3301___n      1 ATGA---GCAAAATGTATAAAGTGGAGATTGTCACACGTCCAGCCAATTT     47

BSNT_05575___     51 TGAAAAGCTGAAGCAGGAACTCGGAAAAATCGGAGTGACCTCTCTGACTT    100
                     .||||...|.|||...||.||.|||||.||.||.||.||.||..|.||.|
BPUM_3301___n     48 CGAAACATTAAAGGTAGAGCTTGGAAAGATTGGTGTCACTTCCATTACCT     97

BSNT_05575___    101 TCTCCAATGTACACGGCTGCGGCCTTCAAAAAGCACATACGGAGCTCTAT    150
                     |.||.|||||||||||||||||..|.|||||.|.||||||.|||.|.|||
BPUM_3301___n     98 TTTCGAATGTACACGGCTGCGGTTTACAAAAGGGACATACAGAGTTATAT    147

BSNT_05575___    151 CGAGGGGTAAAAATAGAAAGCAATGTATACGAGCGTTTAAAAATAGAAAT    200
                     ||.||.||.||||..|||||||||||.|||||.||||||||.||.|||||
BPUM_3301___n    148 CGCGGCGTCAAAAAGGAAAGCAATGTGTACGAACGTTTAAAGATTGAAAT    197

BSNT_05575___    201 TGTGGTCAGCAAGGTTCCTGTTGATCAAGTGACTGAGACCGCTAAAAGGG    250
                     .||..|||||.|.||.||||||||.||.||...|||.||.|||.|||.||
BPUM_3301___n    198 CGTCCTCAGCGAAGTACCTGTTGAACAGGTCGTTGAAACAGCTCAAAAGG    247

BSNT_05575___    251 TGCT--GAAAACGGGATCACCGGGTGACGGTAAAATATTTGTCTATGAAA    298
                     |.||  |.|.|.|.||  |||.||.||.||.|||||.|||.|.|||||.|
BPUM_3301___n    248 TACTTCGTACAGGCGA--ACCAGGGGATGGGAAAATTTTTATATATGAGA    295

BSNT_05575___    299 TCAG-CAATACGATCAACATCCGCACAGGCGAAGAAGGACCTGAAGCACT    347
                     | || .|||||.||||||||.||.|||||.|||||||||||||..||.||
BPUM_3301___n    296 T-AGAAAATACAATCAACATTCGGACAGGTGAAGAAGGACCTGCCGCCCT    344

BSNT_05575___    348 TTAA    351
                     ||||
BPUM_3301___n    345 TTAA    348


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