Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05557 and BPUM_3288

See Amino acid alignment / Visit BSNT_05557 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_05557___flhP.1.24716.seq
#    -bsequence dna-align/BPUM_3288___flhP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05557___flhP-BPUM_3288___flhP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05557___flhP-BPUM_3288___flhP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05557___flhP
# 2: BPUM_3288___flhP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity:     532/890 (59.8%)
# Similarity:   532/890 (59.8%)
# Gaps:         151/890 (17.0%)
# Score: 1443.0
# 
#
#=======================================

BSNT_05557___      1 ATGCTTA-------GGTCAATGCTAACGGCATCAACAACCTTAAACCAGC     43
                     |||||||       |.||||||| |.|.|..||||      |.|||.|..
BPUM_3288___f      1 ATGCTTAGAACGATGATCAATGC-AGCTGTGTCAA------TGAACGAAG     43

BSNT_05557___     44 TGCAGCAGCAGATTGACACTATCAGCAGCAACCTTTCAAACAGCAACACA     93
                     |.||..|||||.||||.|.||||||.|..||..|..|.|||||..|.|||
BPUM_3288___f     44 TACAAAAGCAGCTTGATATTATCAGTAATAATATCGCGAACAGTGAAACA     93

BSNT_05557___     94 ACCGGCTATAAGGCAAAAGATACGAATTTTTCTGAGCTTGTCAGACAGCA    143
                     ||.||.||....||.|||.||||...|||.||.|||||..|||||||.||
BPUM_3288___f     94 ACAGGGTACCGTGCGAAAAATACCCGTTTCTCAGAGCTGATCAGACAACA    143

BSNT_05557___    144 ATTCGATCAGGTTGATGAAAAAAACGAGGAAGTGGCAAA-AG--------    184
                     .|||.|.||.||.|||||||||||.|.|.|.|||||||| ||        
BPUM_3288___f    144 GTTCAACCAAGTGGATGAAAAAAATGCGCAGGTGGCAAACAGTCGTCTGA    193

BSNT_05557___    185 --CCCGAAAAACGCCGCCCGGCTTACGCCTTGG--CGTCGGAGCGATGAT    230
                       ||.||           .||.|||.|.|||||  ||  ||..|||||.|
BPUM_3288___f    194 CACCTGA-----------TGGGTTAAGGCTTGGGACG--GGTACGATGGT    230

BSNT_05557___    231 GAATTCACGCCTGGTC-----TCTGAT--CAAGGAAGCATT-CAGAAGAC    272
                     .|||.|       |||     .||.||  |||||....||| .|||| ||
BPUM_3288___f    231 CAATGC-------GTCCATTAACTCATTGCAAGGCTCGATTAAAGAA-AC    272

BSNT_05557___    273 CGATCGCGATCTGGATATCGCATTTACGTCTCCATACCAGTATCTTCAGG    322
                     .|..||.|||||.|||.|.||.|||....|.||||..||||||.|.||||
BPUM_3288___f    273 AGGCCGTGATCTTGATGTTGCTTTTGGAGCGCCATCTCAGTATATGCAGG    322

BSNT_05557___    323 TAAATGTAAATGGAAACCGCCAG----------TATACGAGGGACGGGGC    362
                     |.|||||          ||.|.|          |||||.||.|||||..|
BPUM_3288___f    323 TCAATGT----------CGGCGGTAATATTCGTTATACAAGAGACGGTTC    362

BSNT_05557___    363 GCTGTATGTAACGCCGTCCGCTGCGAATGCCAACCAGCTGCAGCTCGTCA    412
                     .||.||..||..|||...|..|   |||...||.||..|||||||.||||
BPUM_3288___f    363 TCTTTACTTACAGCCAGGCAAT---AATCGTAATCAAGTGCAGCTTGTCA    409

BSNT_05557___    413 CTGGAAATGGGTATCCCGTACTTGATGAGAACGGCAATACAGTGAACATC    462
                     ||.|..|.|||.||||..|.||||||||.||.||.||     |||| |||
BPUM_3288___f    410 CTAGCGAAGGGCATCCGATCCTTGATGAAAATGGAAA-----TGAA-ATC    453

BSNT_05557___    463 GACAGCTCAAT--GAA-------GA-ATATCACCATCAATAAGAACGGCA    502
                     |.|  .|.|||  |||       || ||.|||  ||..||||.||.||  
BPUM_3288___f    454 GTC--TTAAATGCGAATTTCCGTGATATTTCA--ATTGATAAAAATGG--    497

BSNT_05557___    503 CCTTAACCGCATCTGACGG-----------------AAACGCGGTTCAGC    535
                             .|.||||||.|                 .||| ||..|||||
BPUM_3288___f    498 --------TCGTCTGACAGCCATTTCAAGAGATAATCAAC-CGAATCAGC    538

BSNT_05557___    536 GGTTTAATCTTGGCGTTGTCCAAGTGAATAACCCTCAAGAGCTGAAATCC    585
                     ...|.|||||.||||||||.|||||.|||||..||..||..||....||.
BPUM_3288___f    539 AAGTGAATCTAGGCGTTGTACAAGTCAATAATTCTTCAGCACTTGTCTCT    588

BSNT_05557___    586 GAAGGGAATAACCTTTTCTCTATTGATAATGCGGCAGCTTTTGAAGAGC-    634
                     |||||..||||..|.|||||..||||     |||.| |||.|.||| || 
BPUM_3288___f    589 GAAGGAGATAATTTATTCTCAGTTGA-----CGGTA-CTTATCAAG-GCG    631

BSNT_05557___    635 --TAAACGGCGCT-AATAGACAAAACATCGGCA-----------TGCAGC    670
                       |.||||||.|| |||.||..||||  ||.||           |.||||
BPUM_3288___f    632 CATTAACGGCACTAAATGGAGCAAAC--CGCCAAGCGATTCAGCTTCAGC    679

BSNT_05557___    671 AGGGCTCACTTGAGATGTCCAATGTCGATATTTCAGAACAAATGACAGAT    720
                     |.||..|||||||.|.|||.|||||.|||||.||..||.||.|.||||||
BPUM_3288___f    680 AAGGTGCACTTGAAACGTCGAATGTGGATATGTCTAAAGAATTAACAGAT    729

BSNT_05557___    721 TTGATCACGTCCCAGCGTTCATATCAGCTGAACAGCAGAACGATCACAAT    770
                     .|.||.||..|.|||||.||.||||||.|||||...||||||||.||.||
BPUM_3288___f    730 CTCATGACAACACAGCGCTCCTATCAGATGAACTCAAGAACGATTACGAT    779

BSNT_05557___    771 GGGAGATCAAATGCTCGGTTTAATCAATTCAGTCAGATAA    810
                     |||.|||||.|||||.||.|||.|.|||.||.|..|||||
BPUM_3288___f    780 GGGTGATCAGATGCTTGGATTAGTGAATACAATTCGATAA    819


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05557 and BPUM_3288

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
