Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05537 and BPUM_3279
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:09
# Commandline: needle
# -asequence dna-align/BSNT_05537___ywqA.1.24716.seq
# -bsequence dna-align/BPUM_3279___ywqA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05537___ywqA-BPUM_3279___ywqA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05537___ywqA-BPUM_3279___ywqA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05537___ywqA
# 2: BPUM_3279___ywqA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2875
# Identity: 1994/2875 (69.4%)
# Similarity: 1994/2875 (69.4%)
# Gaps: 203/2875 ( 7.1%)
# Score: 6656.0
#
#
#=======================================
BSNT_05537___ 1 ATGGCGAGTCTTAAAGAAATTCTCATCCACGTCGAACAAATGGAAGATGG 50
|||.|..|.|.||||.|||||.||||.||.|..|||||||..||||||..
BPUM_3279___y 1 ATGACACGCCATAAACAAATTGTCATTCATGCAGAACAAACAGAAGATTT 50
BSNT_05537___ 51 GTCATTTACGCTCTCAGCCTTTGATGAGAATGAGCAGCCTCTTCC-CTAC 99
.||.||.||..|.|||||....|..|||.|.|..||.|||.|||| || .
BPUM_3279___y 51 CTCTTTCACCATTTCAGCGCAAGCAGAGGACGGACACCCTGTTCCGCT-T 99
BSNT_05537___ 100 AACCATATGAAAAAGCATTTGTTCCAATGGCATGAATCCTCATTTTACGG 149
||..|.|||||.|.|||..|.|||||||||||.|||||.||.||||||||
BPUM_3279___y 100 AATGAAATGAAGAGGCAGCTTTTCCAATGGCACGAATCGTCTTTTTACGG 149
BSNT_05537___ 150 AACCTTTCTAGAGGATGTCAGCTTCATCGGGACGACTGCTGTCCTGCTAT 199
|||.|||.||||.|||||.|||||.||.||.||..||||..||||||||.
BPUM_3279___y 150 AACATTTTTAGAAGATGTGAGCTTTATTGGCACACCTGCCTTCCTGCTAA 199
BSNT_05537___ 200 CTCCATGGATGACTGTAGAGCTTCTCGGCAAAAACTCGTTCAACTCATTC 249
..||.||||||||.||.||.||.||.||.|||||.||.||.||..|.||.
BPUM_3279___y 200 GCCCTTGGATGACCGTTGAACTACTAGGAAAAAATTCATTTAATACCTTT 249
BSNT_05537___ 250 AGCTC-CGTG-CAGCTTACAGAAGAAACAGAGCCGCTGATCGAGGCGGCC 297
|| || .||| || ||.||.||.|||||.||.||.|||||..||.|.|||
BPUM_3279___y 250 AG-TCATGTGACA-CTAACCGAGGAAACGGAACCACTGATGAAGACAGCC 297
BSNT_05537___ 298 TCGACCATCTATGAATTTATCGCGGACGGCGATTTTCTGCCTGACTATGA 347
||.|||||.||||||||.||.|.|||.|..||||||.|.||.||.||.||
BPUM_3279___y 298 TCCACCATTTATGAATTCATTGAGGATGAAGATTTTATTCCGGATTACGA 347
BSNT_05537___ 348 CGCATGGACAAACGGTGTTTTTCGCT----------GGAAGGACCGCGAT 387
.||.||||||||.|||||..|.||.| .|||||||
BPUM_3279___y 348 GGCGTGGACAAAAGGTGTACTACGTTTTAAAGACAAAGAAGGAC------ 391
BSNT_05537___ 388 AATATACTGGAGGGCTTTACTGCGGAATGGTTTTCCGCTGCCGTACAGGA 437
||.|.||.||||.|||.||.||||||||.|||..|||.||||||||
BPUM_3279___y 392 ----TATTAGATGGCTATACGGCTGAATGGTTCTCCTTTGCTGTACAGGA 437
BSNT_05537___ 438 TTACATCCAATACGACGATGAACTGCGGGAGAAATGGGAACATATCAAGG 487
||||||.|||||.||.||||.|.|.|.|.|.||||||.|.|..||.|..|
BPUM_3279___y 438 TTACATTCAATATGATGATGCATTACAGCACAAATGGAACCGCATGACAG 487
BSNT_05537___ 488 AGAAATCGCCTGCGGTTACGTCATTCCGCGGCCATTTTCTTGATGAAGAG 537
|..|||||||||||.|..|.||.||||..||.||||||.|.|||||..||
BPUM_3279___y 488 AACAATCGCCTGCGCTCTCATCCTTCCAAGGACATTTTTTAGATGAGCAG 537
BSNT_05537___ 538 GATTTTCTGGAAGGCATTGGCTGGATTGACGACCAATCTCCATTTACTGT 587
|||||..|||||...||||||||||||||.|||.|..|.||.||.|||||
BPUM_3279___y 538 GATTTCTTGGAAACGATTGGCTGGATTGATGACGACACACCTTTCACTGT 587
BSNT_05537___ 588 CGGCTTGCGCTTAAATGAACCGGACTTTGACGGAGACGATTGGAAAATTG 637
|||||||||.|||||||||||.||.||.|||||||||||||||||.||.|
BPUM_3279___y 588 CGGCTTGCGTTTAAATGAACCTGATTTCGACGGAGACGATTGGAAGATCG 637
BSNT_05537___ 638 AGATGTTTTTACGTGATAAAAAGAGCGGTGCTGTAGAATTTTTTGACAGG 687
|..|||||.|.||||||||.||.|.|.|||.|.|..|.|||||||| |||
BPUM_3279___y 638 AATTGTTTCTGCGTGATAAGAAAAACAGTGATCTTCACTTTTTTGA-AGG 686
BSNT_05537___ 688 CTGAAGAGCC------TCAAAAAATCGTGGCAGGCATA-CAGCGATAAAA 730
| |.|| |.||||.|||.|||||..|.|| || .|||||||
BPUM_3279___y 687 C-----ATCCGTTCATTAAAAAGATCTTGGCATCCGTATCA-AGATAAAA 730
BSNT_05537___ 731 TCGCGCGTGAGCAGGACCGCTT---TCACAGAACGGTTCCGTGGCTGTCA 777
||.|..|.||||.|||.||.|| ||| ||..||.||.|||||.||
BPUM_3279___y 731 TCTCCAGAGAGCTGGAGCGATTCGGTCA---AATTGTGCCTTGGCTCTC- 776
BSNT_05537___ 778 TTTGA-TTCCGGGACAACGCTGATCTCGGAGGAAGAAGCCTGGATCTTCC 826
|||.| .||.||.||.||.||.||.||.||.||.|||||.|||.|.||||
BPUM_3279___y 777 TTTCACATCTGGCACCACACTCATGTCAGAAGACGAAGCTTGGCTTTTCC 826
BSNT_05537___ 827 TGTCAGAAGCAAGTGAGACGCTTGTCGATATGGGGGTAGAAATCCTCCTG 876
|.||||||||||||||.||.|||||..|||||||..|.||.||.||.||.
BPUM_3279___y 827 TATCAGAAGCAAGTGAAACCCTTGTGAATATGGGAATTGAGATTCTACTC 876
BSNT_05537___ 877 CCGTCCTGGTGGCAGATTGTCAGAGACAGCAACATGATGCTGAAAGCAAA 926
||.||.||||||||.|||||||.|||.||||.|||||||||.|||||||.
BPUM_3279___y 877 CCATCGTGGTGGCAAATTGTCAAAGAAAGCACCATGATGCTAAAAGCAAG 926
BSNT_05537___ 927 GGTGTCTTCCTCCCCGCGTGGAGAGTCATTTGTCGGCATGAATGCACTGC 976
|.|.||.||..||||..|.||.|||||...||||||.|||.||||..||.
BPUM_3279___y 927 GATTTCCTCTACCCCAAGAGGCGAGTCGCATGTCGGAATGGATGCGTTGA 976
BSNT_05537___ 977 TTGATTTCAACTGGCGGTTTGCGACAAATGGAATTGAACTGACTGAGGAT 1026
|.|||||.||.|||||.|||||.|||||.||.||.||.|||||.||.|||
BPUM_3279___y 977 TGGATTTTAATTGGCGCTTTGCTACAAACGGCATCGAGCTGACAGAAGAT 1026
BSNT_05537___ 1027 GAATTTAATGAGCTTGTCGCCAGCAACAGGCGCCTTGTTAATATCCGCGG 1076
||.||.||.|||||||||...||.||..|.||.|||||.|||||.||.||
BPUM_3279___y 1027 GAGTTCAACGAGCTTGTCCAAAGTAAACGACGTCTTGTCAATATTCGTGG 1076
BSNT_05537___ 1077 GCAATGGGTTAAAATCGATCCGCAGTTTATCAAACAGATGAAACGCCTGA 1126
.||||||.|.|||||||||||....||.|||.|.||.||||||.....||
BPUM_3279___y 1077 ACAATGGATCAAAATCGATCCAACCTTCATCCAGCAAATGAAAAAATGGA 1126
BSNT_05537___ 1127 TGGAAAAAGCAGAATCAGAGGGACTCCACATGTCTGATATTCTGGCGCGC 1176
||||....||.|||...||.||.||.|||||||||||||||.||.|.|||
BPUM_3279___y 1127 TGGAGCGTGCCGAAAATGAAGGGCTGCACATGTCTGATATTTTGTCACGC 1176
BSNT_05537___ 1177 GAGCTAATGGATC-AGCAGGATGGCGGACTTGAG----GATT-CGGATCT 1220
||.||....|||| ||.||.|| |||..| |||| |.||.||
BPUM_3279___y 1177 GAACTGGCAGATCAAGAAGCAT------CTTCTGAATCGATTCCAGAGCT 1220
BSNT_05537___ 1221 GATTGATACATCCGCTTTCGCCGGCATTCAGTTTGATCT---GTCTAAA- 1266
|.|.||.|..||.||.||.||....|||||.|||||.|| ||||.||
BPUM_3279___y 1221 GCTAGACAGCTCAGCATTTGCACATATTCAATTTGAACTTTCGTCTCAAT 1270
BSNT_05537___ 1267 --------------CAGCTCAGGTCACTGATTCGAA--AGCTCACTGCCG 1300
|| ||||.|.|.||||.||.| ||||..||.||
BPUM_3279___y 1271 TAAGAGGACTTGTCCA--TCAGTTAAATGATACGCATGAGCTGCCTTCC- 1317
BSNT_05537___ 1301 CGGAAAACCTGCCGGAGCACGAAGTCAGTCCTTCTTTCAAAGGAACGCTC 1350
.|||||.|.|||..|||.||.|||||.||.|||
BPUM_3279___y 1318 -----------------TACGAAATGAGTGATTCCTTTAAAGGCACACTC 1350
BSNT_05537___ 1351 CGCCCTTATCAGAAATACGGCATG-----AACTGGCTGCTGTT------- 1388
.|.||.|||||| |.||||| |||||||||.|.||
BPUM_3279___y 1351 AGGCCGTATCAG-----CAGCATGGTGTCAACTGGCTGTTATTCTTAAGG 1395
BSNT_05537___ 1389 TCTGCGGGAAAGCGGTTTTGGCGCCTGTCTGGCTGACGATATGGGGCTTG 1438
|||...||| |||||.||.|||.|.||.||||||||||||||||
BPUM_3279___y 1396 TCTCATGGA-------TTTGGAGCTTGTTTAGCAGACGATATGGGGCTTG 1438
BSNT_05537___ 1439 GGAAAACGATTCAAATGATCGCCTATTTC-CTTCACGTGAAGGAAAGCGG 1487
|||||||.|||||||||||.||.|||||| |.| |..|||||| |||.|
BPUM_3279___y 1439 GGAAAACAATTCAAATGATTGCATATTTCACAT-ATTTGAAGG--AGCAG 1485
BSNT_05537___ 1488 CCGGCAAAAAACGCCTCA--TTTGATTATTGCGCCGACATCCGTACTTGG 1535
..|.||||...|||..|| |.|.||.|||||||||||.||.||..|.||
BPUM_3279___y 1486 GAGTCAAATGCCGCTCCATCTCTCATCATTGCGCCGACCTCTGTTTTAGG 1535
BSNT_05537___ 1536 CAACTGGCAGCGGGAGCTTCAAACCTTTGCCCCTGATCTGTCTGTCGCGC 1585
.||||||||.||.||||||.|||||||.||.||..||.||..|||.||..
BPUM_3279___y 1536 AAACTGGCAACGAGAGCTTGAAACCTTCGCACCACATTTGAATGTTGCCT 1585
BSNT_05537___ 1586 TCCATTATGGGC---CGCGTCGGCCAAAGGGGGATGATTTCGCCGCGCAT 1632
|.|||||.|||| |||||| |..||||||.| ||.
BPUM_3279___y 1586 TGCATTACGGGCCATCGCGTC--CTCAAGGGGAA-------------CAC 1620
BSNT_05537___ 1633 TATGAAAACGCAGACG------------TGGTGCTCACTTCATACGGTCT 1670
|.|..|||.|||.||| |.||.||.||.||.||.||.||
BPUM_3279___y 1621 TTTACAAAGGCATACGAGTCAACAGATATTGTCCTGACGTCTTATGGACT 1670
BSNT_05537___ 1671 GTCACATGCAGATACTGAAGAGCTTTCTTCTGTGACATGGAACACGATCT 1720
.||||||.|.|||..|||.||..|..|.||.|..|..|||.|.|||||.|
BPUM_3279___y 1671 CTCACATTCTGATCGTGATGAATTAACATCAGCAAAGTGGGATACGATTT 1720
BSNT_05537___ 1721 GCCTTGATGAAGCGCAAAATATTAAAAACGCGCATACGAAGCAATCACGC 1770
|..|.||.|||||.|||||.|||||.||.||.||||||||.|||||..|.
BPUM_3279___y 1721 GTTTAGACGAAGCTCAAAACATTAAGAATGCCCATACGAAACAATCGAGA 1770
BSNT_05537___ 1771 GCAATCAGGAAGCTGAAGGGGCTTCACCATATCGCGCTGAGCGGCACGCC 1820
||.|||||..||||.||.||.|..||.||.||.||.||.|||||.||.||
BPUM_3279___y 1771 GCGATCAGACAGCTCAAAGGACAGCATCACATTGCCCTTAGCGGGACACC 1820
BSNT_05537___ 1821 GATGGAAAACCGGCTGACTGAGCTGTGGTCCATTTTTGACTTCATGAATA 1870
.|||||||||||..|.||.|||||.||||||||||||||||||.|.||.|
BPUM_3279___y 1821 TATGGAAAACCGTTTAACAGAGCTTTGGTCCATTTTTGACTTCGTCAACA 1870
BSNT_05537___ 1871 AAGGCTATCTCGGCAGTTTGACCGGCTTCCATAAACGCTAT--GTGCTGC 1918
||||.|||||.|||||.|||||..||||.||||| |..|| ||.||||
BPUM_3279___y 1871 AAGGGTATCTTGGCAGCTTGACAAGCTTTCATAA--GAAATTCGTTCTGC 1918
BSNT_05537___ 1919 CGATCGAAAAAGACCGGGACGAAAAGAGAATCGGACAGCTTCAGCA---- 1964
||||||||||||||||.||.|||||.|||||.|.||||||.|||||
BPUM_3279___y 1919 CGATCGAAAAAGACCGTGAAGAAAAAAGAATTGAACAGCTGCAGCAGCTG 1968
BSNT_05537___ 1965 ATTAATCCGGCCATTCCTTCTCCGCCGGACGAAACGGGATGAAGAGGTCG 2014
||||| .||.|||||..|..|.||.||.||.|..|||||||||||||
BPUM_3279___y 1969 ATTAA----ACCTTTCCTATTAAGACGAACAAAGCAAGATGAAGAGGTCG 2014
BSNT_05537___ 2015 CGCTTAATCTT-CCTGAGAAGCTGGAAGAAAAAGAATTTATCCCGCTGTC 2063
|.||.|| ||| ||||||||.||.||||||||||||||.||.|||||.||
BPUM_3279___y 2015 CCCTGAA-CTTGCCTGAGAAACTCGAAGAAAAAGAATTCATTCCGCTCTC 2063
BSNT_05537___ 2064 AGCCGAGCAGGCATCCCTTTATGAGCAGCTCGTCAAAGACACTTTTGACC 2113
.|||||||||||.||..|.|||||.||||||||.|||||.||.||.||.|
BPUM_3279___y 2064 CGCCGAGCAGGCTTCTTTATATGAACAGCTCGTGAAAGATACATTCGAAC 2113
BSNT_05537___ 2114 ATATGACATCCCTGACCGGCATGCAGCGAAAAGCGCTGATCCTCAGCATG 2163
|.|||.|.||..|.||.||.||||||||.|||||..|.||..|.||.|||
BPUM_3279___y 2114 ACATGGCTTCGTTAACAGGAATGCAGCGGAAAGCCATTATTTTAAGTATG 2163
BSNT_05537___ 2164 CTTGGACGGCTCAAGCAAATATGCGATCATCCCGCGCTTTATTTAAAGGA 2213
||.||..|.|||||.||.||.||.|||||.||.||.||.||||||||.|
BPUM_3279___y 2164 CTAGGCAGACTCAAACAGATTTGTGATCACCCAGCACTCTATTTAAAAG- 2212
BSNT_05537___ 2214 AGAG-CAAACCG------AGCTGCTGGCCGGCA---GATCAGTCAAGCTC 2253
|||| ..||||| |.|||||| | |.|||.|.||..|.
BPUM_3279___y 2213 AGAGTGGAACCGATGTGAAACTGCTG------AAACGTTCATTAAAAATG 2256
BSNT_05537___ 2254 GA-AAAATTGCTGGAACTGATGACAGCGATTCGCGCCCAAAACGAAAGCT 2302
|| |||.|.|| .||.|||.|.|.|||.||.|..|..|||..||||||||
BPUM_3279___y 2257 GATAAACTCGC-AGAGCTGTTAAAAGCAATACATGAGCAAGGCGAAAGCT 2305
BSNT_05537___ 2303 GCCTGATTTTCACGCAATACATTCAGATGGGGAACATGATGAAGCGGCTG 2352
||||.||.||.|||||.||.|||...||||||||||||||.||||.||||
BPUM_3279___y 2306 GCCTCATCTTTACGCAGTATATTGGAATGGGGAACATGATCAAGCAGCTG 2355
BSNT_05537___ 2353 CTTGAAAAAACGTTCGGGGAACCTGTGCAATTTTTAAATGGGAGTCTCTC 2402
...|||||.|.|||.||.|||||.||.||||||||||||||.|||||.||
BPUM_3279___y 2356 GCGGAAAAGATGTTTGGCGAACCCGTTCAATTTTTAAATGGCAGTCTGTC 2405
BSNT_05537___ 2403 CAAGCAAGAGCGGGATACACTCGTTGAGAAATTTCAAAGGAAAGAATATC 2452
|||.||.|||||.||||.|.|.||.||....||.||.|.||||||||.|
BPUM_3279___y 2406 CAAACAGGAGCGAGATAAAATGGTGGACCGCTTCCAGAAGAAAGAATTT- 2454
BSNT_05537___ 2453 CGACA--CTGATTCTTTCACTCAAAGCTGGAGGCACCGGACTTAATTTGA 2500
.||| .|.|||||.||..|.|||||.|||||.||.||||||||..|.|
BPUM_3279___y 2455 -AACATCTTAATTCTCTCTTTAAAAGCAGGAGGAACTGGACTTAACCTAA 2503
BSNT_05537___ 2501 CCGCCGCCAATCACGTCATCCATTATGACAGATGGTGGAACCCGGCGGTT 2550
|||||||.||.||.|||||.||.||.||||||||||||||.||.||.||.
BPUM_3279___y 2504 CCGCCGCAAACCATGTCATTCACTACGACAGATGGTGGAATCCCGCTGTG 2553
BSNT_05537___ 2551 GAAAATCAAGCGACTGACCGTGCATACCGCATAGGCCAGGAGCGCTTTGT 2600
|||||.||||||||.|||||.||.||.||.||.||.||..|.||.||.||
BPUM_3279___y 2554 GAAAACCAAGCGACCGACCGAGCTTATCGGATCGGACAAAAACGATTCGT 2603
BSNT_05537___ 2601 CCACGTTCATAAAATGATTACGACGGGAACAATCGAGGAAAAAATTGATG 2650
.|||||||||||.|||||.||.||.||.||.||||||||||||||.|||.
BPUM_3279___y 2604 TCACGTTCATAAGATGATCACAACAGGCACGATCGAGGAAAAAATCGATC 2653
BSNT_05537___ 2651 TCATGCTTGAATCCAAGCAAACCCTGAACGATCAAATTATCCAAAGTGAA 2700
..|||||.|||.|.||.|||||..|.||.|||||||||||||||||||||
BPUM_3279___y 2654 AGATGCTCGAAACAAAACAAACGTTAAATGATCAAATTATCCAAAGTGAA 2703
BSNT_05537___ 2701 AACTGGATTACCGAGCTTTCCACACAGGAGCTTGAAGAACTGTTTACATT 2750
|.|||||||||.|||||.||.|||.|.||.||.||.||..|.||.|||||
BPUM_3279___y 2704 AGCTGGATTACAGAGCTATCAACAAACGAACTAGAGGATTTATTCACATT 2753
BSNT_05537___ 2751 AAGCGCAACAGCGCAATAA------ 2769
|||.||..|.||.||||.|
BPUM_3279___y 2754 AAGTGCCGCCGCTCAATCATCTTAA 2778
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