Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05537 and BPUM_3279

See Amino acid alignment / Visit BSNT_05537 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:09
# Commandline: needle
#    -asequence dna-align/BSNT_05537___ywqA.1.24716.seq
#    -bsequence dna-align/BPUM_3279___ywqA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05537___ywqA-BPUM_3279___ywqA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05537___ywqA-BPUM_3279___ywqA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05537___ywqA
# 2: BPUM_3279___ywqA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2875
# Identity:    1994/2875 (69.4%)
# Similarity:  1994/2875 (69.4%)
# Gaps:         203/2875 ( 7.1%)
# Score: 6656.0
# 
#
#=======================================

BSNT_05537___      1 ATGGCGAGTCTTAAAGAAATTCTCATCCACGTCGAACAAATGGAAGATGG     50
                     |||.|..|.|.||||.|||||.||||.||.|..|||||||..||||||..
BPUM_3279___y      1 ATGACACGCCATAAACAAATTGTCATTCATGCAGAACAAACAGAAGATTT     50

BSNT_05537___     51 GTCATTTACGCTCTCAGCCTTTGATGAGAATGAGCAGCCTCTTCC-CTAC     99
                     .||.||.||..|.|||||....|..|||.|.|..||.|||.|||| || .
BPUM_3279___y     51 CTCTTTCACCATTTCAGCGCAAGCAGAGGACGGACACCCTGTTCCGCT-T     99

BSNT_05537___    100 AACCATATGAAAAAGCATTTGTTCCAATGGCATGAATCCTCATTTTACGG    149
                     ||..|.|||||.|.|||..|.|||||||||||.|||||.||.||||||||
BPUM_3279___y    100 AATGAAATGAAGAGGCAGCTTTTCCAATGGCACGAATCGTCTTTTTACGG    149

BSNT_05537___    150 AACCTTTCTAGAGGATGTCAGCTTCATCGGGACGACTGCTGTCCTGCTAT    199
                     |||.|||.||||.|||||.|||||.||.||.||..||||..||||||||.
BPUM_3279___y    150 AACATTTTTAGAAGATGTGAGCTTTATTGGCACACCTGCCTTCCTGCTAA    199

BSNT_05537___    200 CTCCATGGATGACTGTAGAGCTTCTCGGCAAAAACTCGTTCAACTCATTC    249
                     ..||.||||||||.||.||.||.||.||.|||||.||.||.||..|.||.
BPUM_3279___y    200 GCCCTTGGATGACCGTTGAACTACTAGGAAAAAATTCATTTAATACCTTT    249

BSNT_05537___    250 AGCTC-CGTG-CAGCTTACAGAAGAAACAGAGCCGCTGATCGAGGCGGCC    297
                     || || .||| || ||.||.||.|||||.||.||.|||||..||.|.|||
BPUM_3279___y    250 AG-TCATGTGACA-CTAACCGAGGAAACGGAACCACTGATGAAGACAGCC    297

BSNT_05537___    298 TCGACCATCTATGAATTTATCGCGGACGGCGATTTTCTGCCTGACTATGA    347
                     ||.|||||.||||||||.||.|.|||.|..||||||.|.||.||.||.||
BPUM_3279___y    298 TCCACCATTTATGAATTCATTGAGGATGAAGATTTTATTCCGGATTACGA    347

BSNT_05537___    348 CGCATGGACAAACGGTGTTTTTCGCT----------GGAAGGACCGCGAT    387
                     .||.||||||||.|||||..|.||.|          .|||||||      
BPUM_3279___y    348 GGCGTGGACAAAAGGTGTACTACGTTTTAAAGACAAAGAAGGAC------    391

BSNT_05537___    388 AATATACTGGAGGGCTTTACTGCGGAATGGTTTTCCGCTGCCGTACAGGA    437
                         ||.|.||.||||.|||.||.||||||||.|||..|||.||||||||
BPUM_3279___y    392 ----TATTAGATGGCTATACGGCTGAATGGTTCTCCTTTGCTGTACAGGA    437

BSNT_05537___    438 TTACATCCAATACGACGATGAACTGCGGGAGAAATGGGAACATATCAAGG    487
                     ||||||.|||||.||.||||.|.|.|.|.|.||||||.|.|..||.|..|
BPUM_3279___y    438 TTACATTCAATATGATGATGCATTACAGCACAAATGGAACCGCATGACAG    487

BSNT_05537___    488 AGAAATCGCCTGCGGTTACGTCATTCCGCGGCCATTTTCTTGATGAAGAG    537
                     |..|||||||||||.|..|.||.||||..||.||||||.|.|||||..||
BPUM_3279___y    488 AACAATCGCCTGCGCTCTCATCCTTCCAAGGACATTTTTTAGATGAGCAG    537

BSNT_05537___    538 GATTTTCTGGAAGGCATTGGCTGGATTGACGACCAATCTCCATTTACTGT    587
                     |||||..|||||...||||||||||||||.|||.|..|.||.||.|||||
BPUM_3279___y    538 GATTTCTTGGAAACGATTGGCTGGATTGATGACGACACACCTTTCACTGT    587

BSNT_05537___    588 CGGCTTGCGCTTAAATGAACCGGACTTTGACGGAGACGATTGGAAAATTG    637
                     |||||||||.|||||||||||.||.||.|||||||||||||||||.||.|
BPUM_3279___y    588 CGGCTTGCGTTTAAATGAACCTGATTTCGACGGAGACGATTGGAAGATCG    637

BSNT_05537___    638 AGATGTTTTTACGTGATAAAAAGAGCGGTGCTGTAGAATTTTTTGACAGG    687
                     |..|||||.|.||||||||.||.|.|.|||.|.|..|.|||||||| |||
BPUM_3279___y    638 AATTGTTTCTGCGTGATAAGAAAAACAGTGATCTTCACTTTTTTGA-AGG    686

BSNT_05537___    688 CTGAAGAGCC------TCAAAAAATCGTGGCAGGCATA-CAGCGATAAAA    730
                     |     |.||      |.||||.|||.|||||..|.|| || .|||||||
BPUM_3279___y    687 C-----ATCCGTTCATTAAAAAGATCTTGGCATCCGTATCA-AGATAAAA    730

BSNT_05537___    731 TCGCGCGTGAGCAGGACCGCTT---TCACAGAACGGTTCCGTGGCTGTCA    777
                     ||.|..|.||||.|||.||.||   |||   ||..||.||.|||||.|| 
BPUM_3279___y    731 TCTCCAGAGAGCTGGAGCGATTCGGTCA---AATTGTGCCTTGGCTCTC-    776

BSNT_05537___    778 TTTGA-TTCCGGGACAACGCTGATCTCGGAGGAAGAAGCCTGGATCTTCC    826
                     |||.| .||.||.||.||.||.||.||.||.||.|||||.|||.|.||||
BPUM_3279___y    777 TTTCACATCTGGCACCACACTCATGTCAGAAGACGAAGCTTGGCTTTTCC    826

BSNT_05537___    827 TGTCAGAAGCAAGTGAGACGCTTGTCGATATGGGGGTAGAAATCCTCCTG    876
                     |.||||||||||||||.||.|||||..|||||||..|.||.||.||.||.
BPUM_3279___y    827 TATCAGAAGCAAGTGAAACCCTTGTGAATATGGGAATTGAGATTCTACTC    876

BSNT_05537___    877 CCGTCCTGGTGGCAGATTGTCAGAGACAGCAACATGATGCTGAAAGCAAA    926
                     ||.||.||||||||.|||||||.|||.||||.|||||||||.|||||||.
BPUM_3279___y    877 CCATCGTGGTGGCAAATTGTCAAAGAAAGCACCATGATGCTAAAAGCAAG    926

BSNT_05537___    927 GGTGTCTTCCTCCCCGCGTGGAGAGTCATTTGTCGGCATGAATGCACTGC    976
                     |.|.||.||..||||..|.||.|||||...||||||.|||.||||..||.
BPUM_3279___y    927 GATTTCCTCTACCCCAAGAGGCGAGTCGCATGTCGGAATGGATGCGTTGA    976

BSNT_05537___    977 TTGATTTCAACTGGCGGTTTGCGACAAATGGAATTGAACTGACTGAGGAT   1026
                     |.|||||.||.|||||.|||||.|||||.||.||.||.|||||.||.|||
BPUM_3279___y    977 TGGATTTTAATTGGCGCTTTGCTACAAACGGCATCGAGCTGACAGAAGAT   1026

BSNT_05537___   1027 GAATTTAATGAGCTTGTCGCCAGCAACAGGCGCCTTGTTAATATCCGCGG   1076
                     ||.||.||.|||||||||...||.||..|.||.|||||.|||||.||.||
BPUM_3279___y   1027 GAGTTCAACGAGCTTGTCCAAAGTAAACGACGTCTTGTCAATATTCGTGG   1076

BSNT_05537___   1077 GCAATGGGTTAAAATCGATCCGCAGTTTATCAAACAGATGAAACGCCTGA   1126
                     .||||||.|.|||||||||||....||.|||.|.||.||||||.....||
BPUM_3279___y   1077 ACAATGGATCAAAATCGATCCAACCTTCATCCAGCAAATGAAAAAATGGA   1126

BSNT_05537___   1127 TGGAAAAAGCAGAATCAGAGGGACTCCACATGTCTGATATTCTGGCGCGC   1176
                     ||||....||.|||...||.||.||.|||||||||||||||.||.|.|||
BPUM_3279___y   1127 TGGAGCGTGCCGAAAATGAAGGGCTGCACATGTCTGATATTTTGTCACGC   1176

BSNT_05537___   1177 GAGCTAATGGATC-AGCAGGATGGCGGACTTGAG----GATT-CGGATCT   1220
                     ||.||....|||| ||.||.||      |||..|    |||| |.||.||
BPUM_3279___y   1177 GAACTGGCAGATCAAGAAGCAT------CTTCTGAATCGATTCCAGAGCT   1220

BSNT_05537___   1221 GATTGATACATCCGCTTTCGCCGGCATTCAGTTTGATCT---GTCTAAA-   1266
                     |.|.||.|..||.||.||.||....|||||.|||||.||   ||||.|| 
BPUM_3279___y   1221 GCTAGACAGCTCAGCATTTGCACATATTCAATTTGAACTTTCGTCTCAAT   1270

BSNT_05537___   1267 --------------CAGCTCAGGTCACTGATTCGAA--AGCTCACTGCCG   1300
                                   ||  ||||.|.|.||||.||.|  ||||..||.|| 
BPUM_3279___y   1271 TAAGAGGACTTGTCCA--TCAGTTAAATGATACGCATGAGCTGCCTTCC-   1317

BSNT_05537___   1301 CGGAAAACCTGCCGGAGCACGAAGTCAGTCCTTCTTTCAAAGGAACGCTC   1350
                                      .|||||.|.|||..|||.||.|||||.||.|||
BPUM_3279___y   1318 -----------------TACGAAATGAGTGATTCCTTTAAAGGCACACTC   1350

BSNT_05537___   1351 CGCCCTTATCAGAAATACGGCATG-----AACTGGCTGCTGTT-------   1388
                     .|.||.||||||     |.|||||     |||||||||.|.||       
BPUM_3279___y   1351 AGGCCGTATCAG-----CAGCATGGTGTCAACTGGCTGTTATTCTTAAGG   1395

BSNT_05537___   1389 TCTGCGGGAAAGCGGTTTTGGCGCCTGTCTGGCTGACGATATGGGGCTTG   1438
                     |||...|||       |||||.||.|||.|.||.||||||||||||||||
BPUM_3279___y   1396 TCTCATGGA-------TTTGGAGCTTGTTTAGCAGACGATATGGGGCTTG   1438

BSNT_05537___   1439 GGAAAACGATTCAAATGATCGCCTATTTC-CTTCACGTGAAGGAAAGCGG   1487
                     |||||||.|||||||||||.||.|||||| |.| |..||||||  |||.|
BPUM_3279___y   1439 GGAAAACAATTCAAATGATTGCATATTTCACAT-ATTTGAAGG--AGCAG   1485

BSNT_05537___   1488 CCGGCAAAAAACGCCTCA--TTTGATTATTGCGCCGACATCCGTACTTGG   1535
                     ..|.||||...|||..||  |.|.||.|||||||||||.||.||..|.||
BPUM_3279___y   1486 GAGTCAAATGCCGCTCCATCTCTCATCATTGCGCCGACCTCTGTTTTAGG   1535

BSNT_05537___   1536 CAACTGGCAGCGGGAGCTTCAAACCTTTGCCCCTGATCTGTCTGTCGCGC   1585
                     .||||||||.||.||||||.|||||||.||.||..||.||..|||.||..
BPUM_3279___y   1536 AAACTGGCAACGAGAGCTTGAAACCTTCGCACCACATTTGAATGTTGCCT   1585

BSNT_05537___   1586 TCCATTATGGGC---CGCGTCGGCCAAAGGGGGATGATTTCGCCGCGCAT   1632
                     |.|||||.||||   ||||||  |..||||||.|             ||.
BPUM_3279___y   1586 TGCATTACGGGCCATCGCGTC--CTCAAGGGGAA-------------CAC   1620

BSNT_05537___   1633 TATGAAAACGCAGACG------------TGGTGCTCACTTCATACGGTCT   1670
                     |.|..|||.|||.|||            |.||.||.||.||.||.||.||
BPUM_3279___y   1621 TTTACAAAGGCATACGAGTCAACAGATATTGTCCTGACGTCTTATGGACT   1670

BSNT_05537___   1671 GTCACATGCAGATACTGAAGAGCTTTCTTCTGTGACATGGAACACGATCT   1720
                     .||||||.|.|||..|||.||..|..|.||.|..|..|||.|.|||||.|
BPUM_3279___y   1671 CTCACATTCTGATCGTGATGAATTAACATCAGCAAAGTGGGATACGATTT   1720

BSNT_05537___   1721 GCCTTGATGAAGCGCAAAATATTAAAAACGCGCATACGAAGCAATCACGC   1770
                     |..|.||.|||||.|||||.|||||.||.||.||||||||.|||||..|.
BPUM_3279___y   1721 GTTTAGACGAAGCTCAAAACATTAAGAATGCCCATACGAAACAATCGAGA   1770

BSNT_05537___   1771 GCAATCAGGAAGCTGAAGGGGCTTCACCATATCGCGCTGAGCGGCACGCC   1820
                     ||.|||||..||||.||.||.|..||.||.||.||.||.|||||.||.||
BPUM_3279___y   1771 GCGATCAGACAGCTCAAAGGACAGCATCACATTGCCCTTAGCGGGACACC   1820

BSNT_05537___   1821 GATGGAAAACCGGCTGACTGAGCTGTGGTCCATTTTTGACTTCATGAATA   1870
                     .|||||||||||..|.||.|||||.||||||||||||||||||.|.||.|
BPUM_3279___y   1821 TATGGAAAACCGTTTAACAGAGCTTTGGTCCATTTTTGACTTCGTCAACA   1870

BSNT_05537___   1871 AAGGCTATCTCGGCAGTTTGACCGGCTTCCATAAACGCTAT--GTGCTGC   1918
                     ||||.|||||.|||||.|||||..||||.|||||  |..||  ||.||||
BPUM_3279___y   1871 AAGGGTATCTTGGCAGCTTGACAAGCTTTCATAA--GAAATTCGTTCTGC   1918

BSNT_05537___   1919 CGATCGAAAAAGACCGGGACGAAAAGAGAATCGGACAGCTTCAGCA----   1964
                     ||||||||||||||||.||.|||||.|||||.|.||||||.|||||    
BPUM_3279___y   1919 CGATCGAAAAAGACCGTGAAGAAAAAAGAATTGAACAGCTGCAGCAGCTG   1968

BSNT_05537___   1965 ATTAATCCGGCCATTCCTTCTCCGCCGGACGAAACGGGATGAAGAGGTCG   2014
                     |||||    .||.|||||..|..|.||.||.||.|..|||||||||||||
BPUM_3279___y   1969 ATTAA----ACCTTTCCTATTAAGACGAACAAAGCAAGATGAAGAGGTCG   2014

BSNT_05537___   2015 CGCTTAATCTT-CCTGAGAAGCTGGAAGAAAAAGAATTTATCCCGCTGTC   2063
                     |.||.|| ||| ||||||||.||.||||||||||||||.||.|||||.||
BPUM_3279___y   2015 CCCTGAA-CTTGCCTGAGAAACTCGAAGAAAAAGAATTCATTCCGCTCTC   2063

BSNT_05537___   2064 AGCCGAGCAGGCATCCCTTTATGAGCAGCTCGTCAAAGACACTTTTGACC   2113
                     .|||||||||||.||..|.|||||.||||||||.|||||.||.||.||.|
BPUM_3279___y   2064 CGCCGAGCAGGCTTCTTTATATGAACAGCTCGTGAAAGATACATTCGAAC   2113

BSNT_05537___   2114 ATATGACATCCCTGACCGGCATGCAGCGAAAAGCGCTGATCCTCAGCATG   2163
                     |.|||.|.||..|.||.||.||||||||.|||||..|.||..|.||.|||
BPUM_3279___y   2114 ACATGGCTTCGTTAACAGGAATGCAGCGGAAAGCCATTATTTTAAGTATG   2163

BSNT_05537___   2164 CTTGGACGGCTCAAGCAAATATGCGATCATCCCGCGCTTTATTTAAAGGA   2213
                     ||.||..|.|||||.||.||.||.|||||.||.||.||.||||||||.| 
BPUM_3279___y   2164 CTAGGCAGACTCAAACAGATTTGTGATCACCCAGCACTCTATTTAAAAG-   2212

BSNT_05537___   2214 AGAG-CAAACCG------AGCTGCTGGCCGGCA---GATCAGTCAAGCTC   2253
                     |||| ..|||||      |.||||||      |   |.|||.|.||..|.
BPUM_3279___y   2213 AGAGTGGAACCGATGTGAAACTGCTG------AAACGTTCATTAAAAATG   2256

BSNT_05537___   2254 GA-AAAATTGCTGGAACTGATGACAGCGATTCGCGCCCAAAACGAAAGCT   2302
                     || |||.|.|| .||.|||.|.|.|||.||.|..|..|||..||||||||
BPUM_3279___y   2257 GATAAACTCGC-AGAGCTGTTAAAAGCAATACATGAGCAAGGCGAAAGCT   2305

BSNT_05537___   2303 GCCTGATTTTCACGCAATACATTCAGATGGGGAACATGATGAAGCGGCTG   2352
                     ||||.||.||.|||||.||.|||...||||||||||||||.||||.||||
BPUM_3279___y   2306 GCCTCATCTTTACGCAGTATATTGGAATGGGGAACATGATCAAGCAGCTG   2355

BSNT_05537___   2353 CTTGAAAAAACGTTCGGGGAACCTGTGCAATTTTTAAATGGGAGTCTCTC   2402
                     ...|||||.|.|||.||.|||||.||.||||||||||||||.|||||.||
BPUM_3279___y   2356 GCGGAAAAGATGTTTGGCGAACCCGTTCAATTTTTAAATGGCAGTCTGTC   2405

BSNT_05537___   2403 CAAGCAAGAGCGGGATACACTCGTTGAGAAATTTCAAAGGAAAGAATATC   2452
                     |||.||.|||||.||||.|.|.||.||....||.||.|.||||||||.| 
BPUM_3279___y   2406 CAAACAGGAGCGAGATAAAATGGTGGACCGCTTCCAGAAGAAAGAATTT-   2454

BSNT_05537___   2453 CGACA--CTGATTCTTTCACTCAAAGCTGGAGGCACCGGACTTAATTTGA   2500
                      .|||  .|.|||||.||..|.|||||.|||||.||.||||||||..|.|
BPUM_3279___y   2455 -AACATCTTAATTCTCTCTTTAAAAGCAGGAGGAACTGGACTTAACCTAA   2503

BSNT_05537___   2501 CCGCCGCCAATCACGTCATCCATTATGACAGATGGTGGAACCCGGCGGTT   2550
                     |||||||.||.||.|||||.||.||.||||||||||||||.||.||.||.
BPUM_3279___y   2504 CCGCCGCAAACCATGTCATTCACTACGACAGATGGTGGAATCCCGCTGTG   2553

BSNT_05537___   2551 GAAAATCAAGCGACTGACCGTGCATACCGCATAGGCCAGGAGCGCTTTGT   2600
                     |||||.||||||||.|||||.||.||.||.||.||.||..|.||.||.||
BPUM_3279___y   2554 GAAAACCAAGCGACCGACCGAGCTTATCGGATCGGACAAAAACGATTCGT   2603

BSNT_05537___   2601 CCACGTTCATAAAATGATTACGACGGGAACAATCGAGGAAAAAATTGATG   2650
                     .|||||||||||.|||||.||.||.||.||.||||||||||||||.|||.
BPUM_3279___y   2604 TCACGTTCATAAGATGATCACAACAGGCACGATCGAGGAAAAAATCGATC   2653

BSNT_05537___   2651 TCATGCTTGAATCCAAGCAAACCCTGAACGATCAAATTATCCAAAGTGAA   2700
                     ..|||||.|||.|.||.|||||..|.||.|||||||||||||||||||||
BPUM_3279___y   2654 AGATGCTCGAAACAAAACAAACGTTAAATGATCAAATTATCCAAAGTGAA   2703

BSNT_05537___   2701 AACTGGATTACCGAGCTTTCCACACAGGAGCTTGAAGAACTGTTTACATT   2750
                     |.|||||||||.|||||.||.|||.|.||.||.||.||..|.||.|||||
BPUM_3279___y   2704 AGCTGGATTACAGAGCTATCAACAAACGAACTAGAGGATTTATTCACATT   2753

BSNT_05537___   2751 AAGCGCAACAGCGCAATAA------   2769
                     |||.||..|.||.||||.|      
BPUM_3279___y   2754 AAGTGCCGCCGCTCAATCATCTTAA   2778


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.