Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05536 and BPUM_3278
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:09
# Commandline: needle
# -asequence dna-align/BSNT_05536___ywqB.1.24716.seq
# -bsequence dna-align/BPUM_3278___ywqB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05536___ywqB-BPUM_3278___ywqB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05536___ywqB-BPUM_3278___ywqB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05536___ywqB
# 2: BPUM_3278___ywqB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1786
# Identity: 1055/1786 (59.1%)
# Similarity: 1055/1786 (59.1%)
# Gaps: 353/1786 (19.8%)
# Score: 2627.0
#
#
#=======================================
BSNT_05536___ 1 ATGCTTCAGAATATGATTTCCAAAGACGATGTGCT---GGCATCTGCTGA 47
|||||||||.|.|..|| |||.||.||.|..|| |..|.|.||.||
BPUM_3278___y 1 ATGCTTCAGCACAACAT---CAACGAAGAAGAACTCAAGCAAACAGCAGA 47
BSNT_05536___ 48 ACAGTTAAAAGAACTTCTTCCT--TACAATGAGGAAAATGTTCAGCTGAT 95
|||..|.||||||||||||||| .||| ||.|||||....||.||.||
BPUM_3278___y 48 ACAAATCAAAGAACTTCTTCCTGCAACA--GATGAAAACAAACAACTCAT 95
BSNT_05536___ 96 CAAAAAAGCCCTTATT--TTATATCGGCAGGATTCA--GTCTATCGTTTA 141
|||||||||..|.||| ||||| |.||||| || ||.||||||.|
BPUM_3278___y 96 CAAAAAAGCATTGATTACTTATA--GACAGGA--CAGTGTATATCGTCT- 140
BSNT_05536___ 142 CAAGCAGTGAGTCCG--ACGGAA--GTTACGGCTTACGTGCAGGATGTTG 187
|||||| .||.||.| |||||| || |.|||||.||.||.|||||.|
BPUM_3278___y 141 CAAGCA-AGAATCTGATACGGAATGGT--CAGCTTATGTACATGATGTCG 187
BSNT_05536___ 188 TACCTGTGCGGGT-CACATTGAACTTGT-TTG--TCATAGTCAAAAGCGG 233
|..|.|...|.|| |||.|| |.||| ||| ||.| ||.|.||||.|
BPUM_3278___y 188 TGGCAGCCAGAGTCCACTTT---CATGTATTGTTTCCT-GTGAGAAGCAG 233
BSNT_05536___ 234 CTGTTCATGTCCGTCCGGAAGAATCTGCCGCCATATGCTGGCTGTGTTTT 283
|||.||||||||..|.|...||.|.||....||.||.||.|||||.||.|
BPUM_3278___y 234 CTGCTCATGTCCAGCAGATGGACTTTGTAAACACATTCTCGCTGTCTTCT 283
BSNT_05536___ 284 TATATGTATATG--CAATGTTCGAGCGAGTGGGTAC---TTTTACAGAGT 328
|.|...||||.| ||| || ||.|||||.| || .||||||||..
BPUM_3278___y 284 TTTCGCTATACGCTCAA-GT---AGAGAGTGTG-ACCGGATTTACAGAAA 328
BSNT_05536___ 329 ATTGG-CTGGAGAGGGAAAAGCTGGAGGAA---------AGCAAAGAGCT 368
||||| | .||||| |||.||| ||||||||..|
BPUM_3278___y 329 ATTGGTC-------AGAAAA---GGATGAATTACAACGCAGCAAAGAATT 368
BSNT_05536___ 369 CGTCCGCCGCCAGTTTCAGGAAAAGGTGCTGCCTA-ATGAAGAATCGCTT 417
..|.||||..||.||.||.|..||| .|||.| |.|||.||||.|||
BPUM_3278___y 369 AATTCGCCAGCACTTCCAAGTGAAG----CGCCCAGACGAACAATCACTT 414
BSNT_05536___ 418 TCAAGCTGGCTTGCTTTTTTTGATTC--AGAG---TTTTCTCTCTGGCAG 462
..||||||| |||..|||| ||| |||| |||...|||||||.|
BPUM_3278___y 415 CAAAGCTGG-TTGAATTTT----TTCCAAGAGGAATTTAACCTCTGGCTG 459
BSNT_05536___ 463 GCACGTACGCCAGAAGGCAGCCA--AAACA-TGCAGGGCCTCTATTACGG 509
..|||.||.|| ||.||| ||| ||||| .||||....|.||||||||
BPUM_3278___y 460 AAACGGACACC--AAAGCA-CCAGCAAACACCGCAGCATTTGTATTACGG 506
BSNT_05536___ 510 CTACCTGTCCGCAT--TAAAAAAACATGCGCCGAA--CAAGCCGGAGCTG 555
|||..|.|| .|| ||||||||||.||.||..| || ||.||..|.
BPUM_3278___y 507 CTATTTATC--GATCCTAAAAAAACACGCACCTCATTCA--CCTGAATTC 552
BSNT_05536___ 556 AAAAGCCTGTATCAGATTCATTCCGCGATTGCGGTTTGGCTTCGCATGTT 605
||.||..|||||..|||||||.|..|.||.|..||.|||.|..|.||.|
BPUM_3278___y 553 AAGAGTTTGTATGCGATTCATACGTCAATCGATGTGTGGTTAAGGATTT- 601
BSNT_05536___ 606 CACATTGATTGAAGCG-----GGCAAGCTGAACCCCGAACAAGATTTTTA 650
.|||.|.||.|| |||.||||..|..||||..|.||.|.|||
BPUM_3278___y 602 ----ATGAATTAATCGATCTTGGCCAGCTTGATGCCGAGAAGGACTATTA 647
BSNT_05536___ 651 TTCCCTCAATCCGTACGTTGAACAGCTGATGGATACAAT-----CTACAG 695
||||.|.|||||.||.||.||||||||.|||.|.||.|| .|.|||
BPUM_3278___y 648 TTCCATGAATCCATATGTCGAACAGCTCATGAACACCATTTTTGATTCAG 697
BSNT_05536___ 696 CTCTATTGATAAATTAAAAACGTACGCGCTGTCTTTTGCGCTTGATCCGT 745
|.|||.|.||.||.||.|||||.||.||.|||.|.||.|||||||
BPUM_3278___y 698 -----TGGATCACTTGAAGACATACGCCCTTTCCTTTTCCCTCGATCCGT 742
BSNT_05536___ 746 TTTTGGATAAAACAC---CGGATGTTATCCGAC-CTTTGCTGTTGAAAGA 791
||.|.||.||.|||| |.|..|| ||.||| || |.||.|||.|
BPUM_3278___y 743 TTCTTGAAAACACACCAACTGCCGT--TCGGACACT----TCTTCAAATA 786
BSNT_05536___ 792 A---GAAATTTTCCAATATGAACGCATCCGC-GTCTTCGGTGAAATTTGG 837
| ||..|||| |||.||||||| |...|| |||||....||.||||||
BPUM_3278___y 787 AACGGACCTTTT-CAACATGAACG-AGTAGCGGTCTTTATGGAGATTTGG 834
BSNT_05536___ 838 AGTGCGCTGCTGTCGCGG--CCA--------------AAATGGGTGGCAC 871
|| ||| ||||||||
BPUM_3278___y 835 ----------------GGCACCATATTAAATAGAGGGAAATGGGT----- 863
BSNT_05536___ 872 GTGAACAGGAGATATTGAA----AAAAGA------AGCAG--------GA 903
||.|..|||.|..||| .||||| ||||| .|
BPUM_3278___y 864 ---AAAAAAAGAAACAGAATTACTAAAGAACGCTCAGCAGCAAGAAAAAA 910
BSNT_05536___ 904 CGG-----CGTTTTTCTCC--CGAATTGCAATTCGGGCGCCTGCATTTGG 946
||| ||| .|| ||.|||| || ||.|.||.|||
BPUM_3278___y 911 CGGTAGAACGT-----ACCATCGGATTG--AT----GCACATGGATT--- 946
BSNT_05536___ 947 AATTCCTGCAAAAGAATGATGACGTT---ATTTTTGCGGAA--------G 985
|.||.||| |||||| ||||.| .|.|||..|.|| |
BPUM_3278___y 947 ATTTACTG--AAAGAA----GACGATCACCTCTTTCAGCAATTAAAAATG 990
BSNT_05536___ 986 CGGATCAATTCCCGCCGGAAGCGCTCCCTTATACGTTCCAATGGCTGAGT 1035
| ||||| .|.||...|||.||..||..|.||.|.||||||
BPUM_3278___y 991 C---TCAAT-----GCAGATATGCTGCCAAATGTGCTCAATTGGCTG--- 1029
BSNT_05536___ 1036 GAAATGA-CTGCCAA----GAAGGACTGGAAACGGCTTAAAACATGGTAC 1080
||.|| |||.||| .|||||||||||.|||||.||....|||||.
BPUM_3278___y 1030 --AAGGATCTGACAAACCGCAAGGACTGGAAGCGGCTCAAGCTCTGGTAT 1077
BSNT_05536___ 1081 CAGCAAATTGAGCCA-----ATTGCGATGGGTTATACGA--------AGC 1117
.|..|.|| || ||| |||.|.|| |||
BPUM_3278___y 1078 GAAGAGAT-----CACCTATATT--------TTAGAGGAATATTGTCAGC 1114
BSNT_05536___ 1118 TGGATAAGCCGTT--TAAAGAGATTCGCGATGTGATCGGCGAGCTG---- 1161
|.|| ||.|| ||.||||| .|.|.||| ||||.|
BPUM_3278___y 1115 TCGA----CCTTTCCTACAGAGA---ACTACGTG------GAGCCGTCAG 1151
BSNT_05536___ 1162 ---TTCCTTCT----GTTGAATGCCTATGTGCAGCAAACCAATGATCAAG 1204
||.||||| .||..|.||.||..|..|.||.||.||.|||||..
BPUM_3278___y 1152 TGATTTCTTCTACTATTTAGACGCATACTTTAAACAGACGAAGGATCATC 1201
BSNT_05536___ 1205 CGCTGTTTGAGCGCTTTGCCGC--GGGCTGTCTGCCGTATACGTTCACAG 1252
...|.|.|||.||| |.||.| |..|||..||||.|||.||||.||.|
BPUM_3278___y 1202 ATTTATATGAACGC--TACCTCCAGATCTGCATGCCCTATGCGTTTACTG 1249
BSNT_05536___ 1253 AATACAGCCATCATTTATATGAAAAAAAACGCTATGCCGAGTGGATTGAA 1302
||||.||.||.|..|||||||.|.||.|.||.|||||.||.||||||||.
BPUM_3278___y 1250 AATATAGTCAGCTCTTATATGCACAACAGCGTTATGCAGAATGGATTGAG 1299
BSNT_05536___ 1303 ATTCATAGCCTTGTCGGCTTGTCCATCAATGAAATGGATAAAATGA--TG 1350
|||||.||||||||.||.||.|||||||.||||.||| |.||.|| ||
BPUM_3278___y 1300 ATTCACAGCCTTGTTGGTTTCTCCATCAGTGAACTGG--AGAAGGATCTG 1347
BSNT_05536___ 1351 CTCAAGGAAATTGC-AGCGAGCGACCCTGAGGCGCTTATACCGGCTTACC 1399
.||||..||||||| |..||| ||.|||||||||||.||.||..|.||.|
BPUM_3278___y 1348 ATCAAACAAATTGCAAAAGAG-GAACCTGAGGCGCTCATTCCATCGTATC 1396
BSNT_05536___ 1400 ATAGAGAAGT-----GGCTTTTTTCATTGATCAGAAGAACCGCAGCTCGT 1444
|..|.|||.| .|||| .|.|||||.||.||.||.||..|.|
BPUM_3278___y 1397 ACCGTGAAATCTCACAGCTT-----CTCGATCAAAAAAATCGAAGTGCAT 1441
BSNT_05536___ 1445 ACAAGGAAGCCGCCCGGTATTTG---AAAAAATTGCGCACCCTGTA-CAA 1490
||...|||.|.| .|.|..|| ||||||.|||||||.||.|| ||.
BPUM_3278___y 1442 ACCGAGAATCTG---TGAAAATGCTAAAAAAACTGCGCACGCTTTATCAT 1488
BSNT_05536___ 1491 AAAAGCGAAAAAGCAGAA----GGTGTGGGAGCGGTATATTCAGCTGCTG 1536
|||| ||||||| || |.|.|||||..|.|||.|..|||.||
BPUM_3278___y 1489 AAAA-CGAAAAA----AACTACGATTTGGGAAAGATATGTAAAGCAGC-- 1531
BSNT_05536___ 1537 AGCTCGCATTACAAG-----------CGCCTGCGTGCGCTTCAAGAAGAA 1575
|||||| ||.|||||||||.|.|||||.|||
BPUM_3278___y 1532 ---------TACAAGATTCAACGAAACGGCTGCGTGCGTTCCAAGAGGAA 1572
BSNT_05536___ 1576 CTGCAGAAAGGAAAGTTGATTGATGGCGAGTCTTAA 1611
.||.||||||||||.||.|||||||.|..|.|.|||
BPUM_3278___y 1573 ATGAAGAAAGGAAAATTAATTGATGACACGCCATAA 1608
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