Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05530 and BPUM_3276

See Amino acid alignment / Visit BSNT_05530 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:09
# Commandline: needle
#    -asequence dna-align/BSNT_05530___ywqF.1.24716.seq
#    -bsequence dna-align/BPUM_3276___ywqF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05530___ywqF-BPUM_3276___ywqF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05530___ywqF-BPUM_3276___ywqF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05530___ywqF
# 2: BPUM_3276___ywqF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1474
# Identity:     865/1474 (58.7%)
# Similarity:   865/1474 (58.7%)
# Gaps:         305/1474 (20.7%)
# Score: 2284.0
# 
#
#=======================================

BSNT_05530___      1 ATGAATATAACAGTCATCGGAACAGGC------TATGTCGGTCTTGTGAC     44
                     ||||||||   ||.|||.|   |||||      |||||.||.||.||.||
BPUM_3276___y      1 ATGAATAT---AGCCATTG---CAGGCTGTGGATATGTGGGACTGGTCAC     44

BSNT_05530___     45 AGGTGTTTCTCTTTCTGAGATTGGACATCATGTAACCTGCATTGATATTG     94
                     ||||||.|.|.|..|.|||...||.||..||||..|.||.||||||||||
BPUM_3276___y     45 AGGTGTGTGTTTAGCGGAGGCAGGGCACAATGTGGCGTGTATTGATATTG     94

BSNT_05530___     95 ACGCTCAC-----AAGATTGATG-AAATGAGAAAGGGCATTTCC-CCCAT    137
                     ||     |     |||| |.||| ||.|||.|.|||| |..||| ||.||
BPUM_3276___y     95 AC-----CGGAGAAAGA-TCATGCAACTGAAACAGGG-ACGTCCACCAAT    137

BSNT_05530___    138 ATTTGAACCAGGTCTTGAAGAGCTGATGAGAAAAAATACAGCTGATGGAC    187
                     .|.|||.|||||..|..||||.|||.|||.|...|||...||..|.||||
BPUM_3276___y    138 GTATGAGCCAGGATTAAAAGAACTGCTGAAACGCAATCTTGCGCAAGGAC    187

BSNT_05530___    188 GGCTGAACTTTGAAAAAAGCTATGAGAAAGG----CTTGGCACAGGCAGA    233
                     |..|..|.|||.|.|.||   ||| ||.|||    ||...|.|||||.||
BPUM_3276___y    188 GAATTCAATTTCACATAA---ATG-GAGAGGTAGCCTACCCGCAGGCTGA    233

BSNT_05530___    234 CATCATTTTTATAGCGGTCGGCACACCGCAGAAAAGC-GATGGGCACGCC    282
                     ..|..|..|.||.|||||.||.||.|||||| .|||| ||||     |||
BPUM_3276___y    234 TGTGTTAATGATTGCGGTTGGTACCCCGCAG-CAAGCAGATG-----GCC    277

BSNT_05530___    283 AATCTGGAGCAAATTAC-AGATGCG------GC--CAAACG-CATCG---    319
                     ||.|||     |.|||| |.|||.|      ||  ||||.| .||||   
BPUM_3276___y    278 AAGCTG-----ATTTACAATATGTGCTTCAAGCCGCAAAGGAGATCGGTA    322

BSNT_05530___    320 -CAAAGCATGTCAAACGAGATACAG---TCGTGGTAACGAAAAGCACAGT    365
                      .||||||    |||..||.|.|.|   |.|||||   ||||||.|||||
BPUM_3276___y    323 CAAAAGCA----AAATCAGGTGCGGTTCTTGTGGT---GAAAAGTACAGT    365

BSNT_05530___    366 GCCCGTTGGGACAAACGATTTGATTAA--TGGACTGATCACTGA-ACATC    412
                     |||.|||||.||     |..||||.||  .|.||.||    ||| |||||
BPUM_3276___y    366 GCCTGTTGGAAC-----AGGTGATCAAATCGAACAGA----TGATACATC    406

BSNT_05530___    413 TAG--------CG----GAGCCTGTCAGTATT-TCGGTTGCATCCAATCC    449
                     .||        ||    |||||       ||| ||..|||||||.||.||
BPUM_3276___y    407 AAGAATTAGGACGGAAAGAGCC-------ATTATCAATTGCATCTAACCC    449

BSNT_05530___    450 GGAATTTTTGCGTGAGGGGTCGGCGATCTATGATACCTTTCATGGTGACA    499
                     .||.|||||.||.||.||.||.||.||.|..|||||.|    ||..|.||
BPUM_3276___y    450 AGAGTTTTTACGAGAAGGCTCTGCCATTTCAGATACAT----TGAGGGCA    495

BSNT_05530___    500 GGATC-----GTGATCGGGACGGCCGATGAGAAAACAGC------AAATA    538
                      ||||     |||||.|||      |.|||.|.||.|||      |.|..
BPUM_3276___y    496 -GATCGGCTTGTGATTGGG------GCTGAAACAAAAGCGGTATTAGACC    538

BSNT_05530___    539 CGCTGGAGGAGCTCTTCCGTCCGTTTCAAATCCCGATTTAC---------    579
                     .|||.||||||.|.|              ||.|.|||||.|         
BPUM_3276___y    539 GGCTCGAGGAGATGT--------------ATGCTGATTTCCACTTGCCAG    574

BSNT_05530___    580 ---------CAAACGGATATCAGAAGCGCCGAGATGATCAAATATGCCTC    620
                              ||.||.||    |.|||.||.||.||||||||.|||||.||
BPUM_3276___y    575 TAGTCAAGACAGACCGA----AAAAGTGCAGAAATGATCAAGTATGCATC    620

BSNT_05530___    621 AAATGCTTTTCTGGCCACTAAGATCAGTTTTATAAACGAAATTTCGAATA    670
                     |||.||||||||.||.||.||.|||||.||.||.||.||.||..|...||
BPUM_3276___y    621 AAACGCTTTTCTTGCGACCAAAATCAGCTTCATGAATGAGATCGCCTCTA    670

BSNT_05530___    671 TATGTG----AAAAGGTCGGCGCCGATATTGAAGCAGTCGCATACGGGAT    716
                     |.||||    ||.||||    ||.|||.|.|||...||.||..|.||.||
BPUM_3276___y    671 TTTGTGAGAAAACAGGT----GCTGATGTGGAATGGGTGGCGCAGGGAAT    716

BSNT_05530___    717 GGGACAGGATAAGCGGATCGGGAGCCAGTTTTTAAAAGCGGGTATAGGCT    766
                     |||.|..|||.|.||||||||......||||.|.||.|||||.||.||||
BPUM_3276___y    717 GGGGCTCGATCAACGGATCGGTTCTTCGTTTCTCAAGGCGGGGATTGGCT    766

BSNT_05530___    767 ACGGCGGCTCTTGTTTTCCAAAGGACACAAACGCCCTCGTGCAAATTGCC    816
                     ||||.||.||||||||.||||||||.|||||.||.||.||.|||||.||.
BPUM_3276___y    767 ACGGAGGTTCTTGTTTCCCAAAGGATACAAATGCACTTGTCCAAATCGCA    816

BSNT_05530___    817 GGCAATGTCGAGCATGATTTTGAACTGCTGAAATCGGTTATCAAAGTCAA    866
                     ||..||||...||||||||||||.||.||.||..|.|||||||||||   
BPUM_3276___y    817 GGGCATGTGTCGCATGATTTTGAGCTACTAAAGGCTGTTATCAAAGT---    863

BSNT_05530___    867 TAACAATCAGCAGGCGATGCTGGTT------GA-----TAAAGCGCTGAA    905
                     .||||||.|||| |||| ||.||||      ||     |.|||      |
BPUM_3276___y    864 AAACAATGAGCA-GCGA-GCCGGTTTTATCAGAAGTATTCAAG------A    905

BSNT_05530___    906 CAGGCTCGGCGGGG--------TGACGGGAAAAACG-ATTGCCCTTTTAG    946
                     .||.||    ||||        |||.|||  ||.|| |||||.||..|.|
BPUM_3276___y    906 GAGACT----GGGGGCAAATCTTGAAGGG--AAGCGAATTGCACTGCTTG    949

BSNT_05530___    947 GCCTGTCATTTAAACCGAATACGGACGATATGAGAGAAGCGCCGT-----    991
                     |.||..|.||||||||||||||.|||||||||||.||.|||||.|     
BPUM_3276___y    950 GTCTTGCTTTTAAACCGAATACAGACGATATGAGGGAGGCGCCATCTGTT    999

BSNT_05530___    992 -CAATTGTTATTGCAGACCGTC------TCGCTGCGCTCGACGCCCGTAT   1034
                      ||||.|.|..||.|..||.||      .|||.|.|||.|..|  |||||
BPUM_3276___y   1000 CCAATAGCTCATGAACTCCATCAATTAGGCGCGGAGCTTGTGG--CGTAT   1047

BSNT_05530___   1035 CAGAGCCTACGATCCCATTGCAGTTGGTCATGCAAAGCATGTTCTCCCGC   1084
                               |||||..||||     .|||.||    ||||     ||  
BPUM_3276___y   1048 ----------GATCCTGTTGC-----CTCACGC----CATG-----CC--   1071

BSNT_05530___   1085 AAGCTGTTGAAT------ATAAAG------------AGACGATCGAGGAA   1116
                       |||..|||||      ||.|||            |.|||||.||.|||
BPUM_3276___y   1072 --GCTCGTGAATTACCGGATCAAGTCGTGTTTGCTCATACGATTGAAGAA   1119

BSNT_05530___   1117 GCTGTCAAAGGTTCTGACGCCGT-CATG--------ATTTTAACCGACTG   1157
                     || |..|||||.|        || ||||        ||.|||||.||.||
BPUM_3276___y   1120 GC-GATAAAGGAT--------GTCCATGCAGTGTGTATATTAACAGAGTG   1160

BSNT_05530___   1158 GGCTGACATT-AAACAATTTCCGTTAGCGGCTTATCAGGATTTGATGGAA   1206
                     |.|.||.||| |.|| .|||||..|...|.|.|||.||||.|.||||..|
BPUM_3276___y   1161 GACAGAGATTCAGAC-GTTTCCTCTCAAGTCCTATAAGGAATGGATGAGA   1209

BSNT_05530___   1207 TCGCCGCTCATATTTGACGGCAGAAACTGCTACACATTGGATGAAGCTGC   1256
                     ..||||||.||.|||||.||..|||||||..|.|||.|   ||||||.||
BPUM_3276___y   1210 CAGCCGCTTATTTTTGATGGACGAAACTGTCATACACT---TGAAGCGGC   1256

BSNT_05530___   1257 GG---CTGTAGGAGTGGAGTATTATTCTGTCGGTCGGAAGGCGGTTGTTC   1303
                     .|   ..|.||||||.||.|||.||||..|.||.||.|...|.|||..||
BPUM_3276___y   1257 AGAACAAGCAGGAGTCGAATATCATTCGATTGGGCGCAGACCAGTTTCTC   1306

BSNT_05530___   1304 CGTCAGGTGCAATTCAATAG----   1323
                     |          |.||.|||.    
BPUM_3276___y   1307 C----------AATCTATATGTAA   1320


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