Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05530 and BPUM_3276
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:09
# Commandline: needle
# -asequence dna-align/BSNT_05530___ywqF.1.24716.seq
# -bsequence dna-align/BPUM_3276___ywqF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05530___ywqF-BPUM_3276___ywqF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05530___ywqF-BPUM_3276___ywqF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05530___ywqF
# 2: BPUM_3276___ywqF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1474
# Identity: 865/1474 (58.7%)
# Similarity: 865/1474 (58.7%)
# Gaps: 305/1474 (20.7%)
# Score: 2284.0
#
#
#=======================================
BSNT_05530___ 1 ATGAATATAACAGTCATCGGAACAGGC------TATGTCGGTCTTGTGAC 44
|||||||| ||.|||.| ||||| |||||.||.||.||.||
BPUM_3276___y 1 ATGAATAT---AGCCATTG---CAGGCTGTGGATATGTGGGACTGGTCAC 44
BSNT_05530___ 45 AGGTGTTTCTCTTTCTGAGATTGGACATCATGTAACCTGCATTGATATTG 94
||||||.|.|.|..|.|||...||.||..||||..|.||.||||||||||
BPUM_3276___y 45 AGGTGTGTGTTTAGCGGAGGCAGGGCACAATGTGGCGTGTATTGATATTG 94
BSNT_05530___ 95 ACGCTCAC-----AAGATTGATG-AAATGAGAAAGGGCATTTCC-CCCAT 137
|| | |||| |.||| ||.|||.|.|||| |..||| ||.||
BPUM_3276___y 95 AC-----CGGAGAAAGA-TCATGCAACTGAAACAGGG-ACGTCCACCAAT 137
BSNT_05530___ 138 ATTTGAACCAGGTCTTGAAGAGCTGATGAGAAAAAATACAGCTGATGGAC 187
.|.|||.|||||..|..||||.|||.|||.|...|||...||..|.||||
BPUM_3276___y 138 GTATGAGCCAGGATTAAAAGAACTGCTGAAACGCAATCTTGCGCAAGGAC 187
BSNT_05530___ 188 GGCTGAACTTTGAAAAAAGCTATGAGAAAGG----CTTGGCACAGGCAGA 233
|..|..|.|||.|.|.|| ||| ||.||| ||...|.|||||.||
BPUM_3276___y 188 GAATTCAATTTCACATAA---ATG-GAGAGGTAGCCTACCCGCAGGCTGA 233
BSNT_05530___ 234 CATCATTTTTATAGCGGTCGGCACACCGCAGAAAAGC-GATGGGCACGCC 282
..|..|..|.||.|||||.||.||.|||||| .|||| |||| |||
BPUM_3276___y 234 TGTGTTAATGATTGCGGTTGGTACCCCGCAG-CAAGCAGATG-----GCC 277
BSNT_05530___ 283 AATCTGGAGCAAATTAC-AGATGCG------GC--CAAACG-CATCG--- 319
||.||| |.|||| |.|||.| || ||||.| .||||
BPUM_3276___y 278 AAGCTG-----ATTTACAATATGTGCTTCAAGCCGCAAAGGAGATCGGTA 322
BSNT_05530___ 320 -CAAAGCATGTCAAACGAGATACAG---TCGTGGTAACGAAAAGCACAGT 365
.|||||| |||..||.|.|.| |.||||| ||||||.|||||
BPUM_3276___y 323 CAAAAGCA----AAATCAGGTGCGGTTCTTGTGGT---GAAAAGTACAGT 365
BSNT_05530___ 366 GCCCGTTGGGACAAACGATTTGATTAA--TGGACTGATCACTGA-ACATC 412
|||.|||||.|| |..||||.|| .|.||.|| ||| |||||
BPUM_3276___y 366 GCCTGTTGGAAC-----AGGTGATCAAATCGAACAGA----TGATACATC 406
BSNT_05530___ 413 TAG--------CG----GAGCCTGTCAGTATT-TCGGTTGCATCCAATCC 449
.|| || ||||| ||| ||..|||||||.||.||
BPUM_3276___y 407 AAGAATTAGGACGGAAAGAGCC-------ATTATCAATTGCATCTAACCC 449
BSNT_05530___ 450 GGAATTTTTGCGTGAGGGGTCGGCGATCTATGATACCTTTCATGGTGACA 499
.||.|||||.||.||.||.||.||.||.|..|||||.| ||..|.||
BPUM_3276___y 450 AGAGTTTTTACGAGAAGGCTCTGCCATTTCAGATACAT----TGAGGGCA 495
BSNT_05530___ 500 GGATC-----GTGATCGGGACGGCCGATGAGAAAACAGC------AAATA 538
|||| |||||.||| |.|||.|.||.||| |.|..
BPUM_3276___y 496 -GATCGGCTTGTGATTGGG------GCTGAAACAAAAGCGGTATTAGACC 538
BSNT_05530___ 539 CGCTGGAGGAGCTCTTCCGTCCGTTTCAAATCCCGATTTAC--------- 579
.|||.||||||.|.| ||.|.|||||.|
BPUM_3276___y 539 GGCTCGAGGAGATGT--------------ATGCTGATTTCCACTTGCCAG 574
BSNT_05530___ 580 ---------CAAACGGATATCAGAAGCGCCGAGATGATCAAATATGCCTC 620
||.||.|| |.|||.||.||.||||||||.|||||.||
BPUM_3276___y 575 TAGTCAAGACAGACCGA----AAAAGTGCAGAAATGATCAAGTATGCATC 620
BSNT_05530___ 621 AAATGCTTTTCTGGCCACTAAGATCAGTTTTATAAACGAAATTTCGAATA 670
|||.||||||||.||.||.||.|||||.||.||.||.||.||..|...||
BPUM_3276___y 621 AAACGCTTTTCTTGCGACCAAAATCAGCTTCATGAATGAGATCGCCTCTA 670
BSNT_05530___ 671 TATGTG----AAAAGGTCGGCGCCGATATTGAAGCAGTCGCATACGGGAT 716
|.|||| ||.|||| ||.|||.|.|||...||.||..|.||.||
BPUM_3276___y 671 TTTGTGAGAAAACAGGT----GCTGATGTGGAATGGGTGGCGCAGGGAAT 716
BSNT_05530___ 717 GGGACAGGATAAGCGGATCGGGAGCCAGTTTTTAAAAGCGGGTATAGGCT 766
|||.|..|||.|.||||||||......||||.|.||.|||||.||.||||
BPUM_3276___y 717 GGGGCTCGATCAACGGATCGGTTCTTCGTTTCTCAAGGCGGGGATTGGCT 766
BSNT_05530___ 767 ACGGCGGCTCTTGTTTTCCAAAGGACACAAACGCCCTCGTGCAAATTGCC 816
||||.||.||||||||.||||||||.|||||.||.||.||.|||||.||.
BPUM_3276___y 767 ACGGAGGTTCTTGTTTCCCAAAGGATACAAATGCACTTGTCCAAATCGCA 816
BSNT_05530___ 817 GGCAATGTCGAGCATGATTTTGAACTGCTGAAATCGGTTATCAAAGTCAA 866
||..||||...||||||||||||.||.||.||..|.|||||||||||
BPUM_3276___y 817 GGGCATGTGTCGCATGATTTTGAGCTACTAAAGGCTGTTATCAAAGT--- 863
BSNT_05530___ 867 TAACAATCAGCAGGCGATGCTGGTT------GA-----TAAAGCGCTGAA 905
.||||||.|||| |||| ||.|||| || |.||| |
BPUM_3276___y 864 AAACAATGAGCA-GCGA-GCCGGTTTTATCAGAAGTATTCAAG------A 905
BSNT_05530___ 906 CAGGCTCGGCGGGG--------TGACGGGAAAAACG-ATTGCCCTTTTAG 946
.||.|| |||| |||.||| ||.|| |||||.||..|.|
BPUM_3276___y 906 GAGACT----GGGGGCAAATCTTGAAGGG--AAGCGAATTGCACTGCTTG 949
BSNT_05530___ 947 GCCTGTCATTTAAACCGAATACGGACGATATGAGAGAAGCGCCGT----- 991
|.||..|.||||||||||||||.|||||||||||.||.|||||.|
BPUM_3276___y 950 GTCTTGCTTTTAAACCGAATACAGACGATATGAGGGAGGCGCCATCTGTT 999
BSNT_05530___ 992 -CAATTGTTATTGCAGACCGTC------TCGCTGCGCTCGACGCCCGTAT 1034
||||.|.|..||.|..||.|| .|||.|.|||.|..| |||||
BPUM_3276___y 1000 CCAATAGCTCATGAACTCCATCAATTAGGCGCGGAGCTTGTGG--CGTAT 1047
BSNT_05530___ 1035 CAGAGCCTACGATCCCATTGCAGTTGGTCATGCAAAGCATGTTCTCCCGC 1084
|||||..|||| .|||.|| |||| ||
BPUM_3276___y 1048 ----------GATCCTGTTGC-----CTCACGC----CATG-----CC-- 1071
BSNT_05530___ 1085 AAGCTGTTGAAT------ATAAAG------------AGACGATCGAGGAA 1116
|||..||||| ||.||| |.|||||.||.|||
BPUM_3276___y 1072 --GCTCGTGAATTACCGGATCAAGTCGTGTTTGCTCATACGATTGAAGAA 1119
BSNT_05530___ 1117 GCTGTCAAAGGTTCTGACGCCGT-CATG--------ATTTTAACCGACTG 1157
|| |..|||||.| || |||| ||.|||||.||.||
BPUM_3276___y 1120 GC-GATAAAGGAT--------GTCCATGCAGTGTGTATATTAACAGAGTG 1160
BSNT_05530___ 1158 GGCTGACATT-AAACAATTTCCGTTAGCGGCTTATCAGGATTTGATGGAA 1206
|.|.||.||| |.|| .|||||..|...|.|.|||.||||.|.||||..|
BPUM_3276___y 1161 GACAGAGATTCAGAC-GTTTCCTCTCAAGTCCTATAAGGAATGGATGAGA 1209
BSNT_05530___ 1207 TCGCCGCTCATATTTGACGGCAGAAACTGCTACACATTGGATGAAGCTGC 1256
..||||||.||.|||||.||..|||||||..|.|||.| ||||||.||
BPUM_3276___y 1210 CAGCCGCTTATTTTTGATGGACGAAACTGTCATACACT---TGAAGCGGC 1256
BSNT_05530___ 1257 GG---CTGTAGGAGTGGAGTATTATTCTGTCGGTCGGAAGGCGGTTGTTC 1303
.| ..|.||||||.||.|||.||||..|.||.||.|...|.|||..||
BPUM_3276___y 1257 AGAACAAGCAGGAGTCGAATATCATTCGATTGGGCGCAGACCAGTTTCTC 1306
BSNT_05530___ 1304 CGTCAGGTGCAATTCAATAG---- 1323
| |.||.|||.
BPUM_3276___y 1307 C----------AATCTATATGTAA 1320
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