Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05510 and BPUM_3275
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_05510___ywrA.1.24716.seq
# -bsequence dna-align/BPUM_3275___ywrA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05510___ywrA-BPUM_3275___ywrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05510___ywrA-BPUM_3275___ywrA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05510___ywrA
# 2: BPUM_3275___ywrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 560
# Identity: 386/560 (68.9%)
# Similarity: 386/560 (68.9%)
# Gaps: 46/560 ( 8.2%)
# Score: 1224.5
#
#
#=======================================
BSNT_05510___ 1 ATGATATCGA---TCTATTTATTTATGGCGTTTTTTATCGCAAACCTACT 47
|||||...|| |||.||||||...|||.||.||..|..|.||.|||.|
BPUM_3275___y 1 ATGATGCTGATTCTCTTTTTATTCTGGGCATTCTTCTTGTCCAATCTATT 50
BSNT_05510___ 48 GGGATATGGCGGCGGACCTGCGTCTATCCCGCT-AATGTTTGAAGAAGTC 96
.|||||||||||.||||||||.||.||.||||| ||| |.|||||||.||
BPUM_3275___y 51 AGGATATGGCGGAGGACCTGCATCAATTCCGCTGAAT-TATGAAGAAATC 99
BSNT_05510___ 97 GT-AAACAGATACAGCTGGCTCTCAAACGATCAATTCTCAAATATGCTCG 145
|| ||.||..|.|| .|||.|..|.|||||...|||.||.||||||||.|
BPUM_3275___y 100 GTCAACCATTTTCA-TTGGATGACGAACGAAGGATTTTCCAATATGCTTG 148
BSNT_05510___ 146 CACTTGCGAACGCATTGCCGGGCCCGATCGCCACGAAAATCGCTGCGTAT 195
|..|.||.||.|||.|.||.||.||.||.||.|||||||||||.||.|||
BPUM_3275___y 149 CTTTAGCCAATGCACTTCCAGGACCAATTGCGACGAAAATCGCAGCATAT 198
BSNT_05510___ 196 GTCGGCTACAGCG-CAGGCGGGTGGCCCGGCTTCCTAATTGCCCTGATCG 244
||||||||...|| ||.| ||.|||||.|||||..|..|.||.|||.|.|
BPUM_3275___y 199 GTCGGCTATGACGTCATG-GGCTGGCCAGGCTTTATTGTGGCACTGCTTG 247
BSNT_05510___ 245 CAACCGTCGTACCGTCGGCGCTCGCATTGATCGTCCTGCTGCGCA---TC 291
||||.||..|.||.||.||..|.|.||||| |.||..|||.|| |.
BPUM_3275___y 248 CAACTGTACTGCCATCAGCCATTGGATTGA---TTCTATTGCTCAAGCTG 294
BSNT_05510___ 292 ATCCAGCGCTTCCGCCAATCACCTGTCATCAAAGGCATGACGCTGTCCGT 341
||..|.||.||.|||||||||||||||.|||||||||||||..|.|||||
BPUM_3275___y 295 ATTGACCGTTTTCGCCAATCACCTGTCGTCAAAGGCATGACCTTATCCGT 344
BSNT_05510___ 342 CCAGCCTGTCATCGCGGTCATGATGCTCATTCTT-ACCTGGCAAATCAGC 390
||||||||||||.|||.|.|||||||| .||.|| ||.|||.||||..||
BPUM_3275___y 345 CCAGCCTGTCATTGCGATGATGATGCT-TTTATTAACATGGGAAATTGGC 393
BSNT_05510___ 391 GCAGACGGCA-TCAAAGCGATCGGCTGGATCCAATCGATCGTGATTGCGG 439
|.||| .||| |.|||||.||.||||||||.||||||.|.|..|||||.|
BPUM_3275___y 394 GGAGA-TGCAGTGAAAGCCATTGGCTGGATGCAATCGCTTGCCATTGCTG 442
BSNT_05510___ 440 GAATTTCGCTCCTT----GCCATGACAAAATTCAAAATGCATCCGGCATT 485
..|| |||||| ...|||||.||||.|||||||||.||.||.||
BPUM_3275___y 443 CGAT----CTCCTTTTTCTTTATGACTAAATACAAAATGCACCCCGCCTT 488
BSNT_05510___ 486 TTTGATTATCGCGGCGTTTTTATATGGGGGCCTTGTGATCCCTCATT--- 532
|.|.|||.|.||.||.|||||||||||.| ||| |||||
BPUM_3275___y 489 TCTCATTGTGGCTGCCTTTTTATATGGCG-------GAT---TCATTCTA 528
BSNT_05510___ 533 -----TTTAG 537
||.|
BPUM_3275___y 529 CCGCATTAA- 537
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