Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05507 and BPUM_3273
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_05507___ywrC.1.24716.seq
# -bsequence dna-align/BPUM_3273___ywrC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05507___ywrC-BPUM_3273___ywrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05507___ywrC-BPUM_3273___ywrC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05507___ywrC
# 2: BPUM_3273___ywrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 517
# Identity: 366/517 (70.8%)
# Similarity: 366/517 (70.8%)
# Gaps: 44/517 ( 8.5%)
# Score: 1335.5
#
#
#=======================================
BSNT_05507___ 1 -------------------------TTGAGTCAT------------GAAT 13
.|| ||||| ||.|
BPUM_3273___y 1 GTGTTAAAATATCAACAGAAGAAAGGTG-GTCATACGGTGTCAAACGACT 49
BSNT_05507___ 14 ATCAAATCCCCAACCTTGTACTTGATGA--GACTGATAAACAAATTCTCA 61
||...||.||.|||.|...|.|.||.|| || ||||||||||||.|..
BPUM_3273___y 50 ATAGCATTCCGAACTTAACATTAGACGAACGA--GATAAACAAATTTTAT 97
BSNT_05507___ 62 CGATTTTGCATGAAGAAGGCAGAATTTCTTATACGGATCTTGGCAAAAGA 111
|..|.||.|||||.||.||..|.||.||.|||||.|||||.||.|||..|
BPUM_3273___y 98 CCCTATTACATGAGGACGGGCGTATGTCCTATACAGATCTCGGGAAACAA 147
BSNT_05507___ 112 GTCGATTTGTCACGGGTCGCCGTGCAGGCCCGTATCAACCAATTAATTGA 161
||||.|.|.|||||.||.||.|||||.||||||||..|.||..|.|||||
BPUM_3273___y 148 GTCGGTCTTTCACGTGTTGCTGTGCAAGCCCGTATTCAGCAGCTGATTGA 197
BSNT_05507___ 162 AGCCGGTGTTATTGAAAAATTCACCGCTGTCATCAATCCCGCTAAAATCG 211
|||.||.||.||||||..||||||..|.||||||||.||.|||||.||||
BPUM_3273___y 198 AGCAGGCGTCATTGAACGATTCACAACAGTCATCAACCCTGCTAAGATCG 247
BSNT_05507___ 212 GCATTCATGTTTCCGTGTTTTTCAATGTCGAGGTAGAACCGCAATTTTTA 261
|||||||||||||.||.||.||.|||||.||.||.||.|||.||||||||
BPUM_3273___y 248 GCATTCATGTTTCTGTCTTCTTTAATGTAGAAGTGGAGCCGAAATTTTTA 297
BSNT_05507___ 262 GAAGAGGTCGCTCTTAAGCTTGAGGAAGAGCCTGCGGTCACCAGCCTTTA 311
||||..|||||.|||.||||||||.||||..|.||.|||||.||||||||
BPUM_3273___y 298 GAAGCAGTCGCCCTTCAGCTTGAGCAAGAAACAGCTGTCACAAGCCTTTA 347
BSNT_05507___ 312 TCACATGACAGGCCCGAGCAAGCTGCATATGCATGGGATCTTTGCCAACG 361
||||||||||||.||.|||||.||||||||||||||.||.|||...||||
BPUM_3273___y 348 TCACATGACAGGGCCAAGCAAACTGCATATGCATGGCATTTTTCAAAACG 397
BSNT_05507___ 362 ATCAAGAAATGGAAGA-ATTTTTAACAAAACGGCTGTATCCATTGCGAGG 410
|.|||||||||| ||| ||||.||||||||...|||||.||..|...|||
BPUM_3273___y 398 AACAAGAAATGG-AGACATTTCTAACAAAAAAACTGTACCCGCTAGAAGG 446
BSNT_05507___ 411 CGTCGTCAGTGTTGATTGCCAGATGCTGATCAAACGATACAAAAGCCGTA 460
||||||.|||||.||.|||||.|||||.||.|||||.|||||||||||.|
BPUM_3273___y 447 CGTCGTGAGTGTGGACTGCCAAATGCTTATTAAACGGTACAAAAGCCGAA 496
BSNT_05507___ 461 TGGGAATGAAGCTGTAA 477
||||.|||||..||||.
BPUM_3273___y 497 TGGGCATGAAATTGTAG 513
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