Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05487 and BPUM_3271
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_05487___alsS.1.24716.seq
# -bsequence dna-align/BPUM_3271___alsS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05487___alsS-BPUM_3271___alsS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05487___alsS-BPUM_3271___alsS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05487___alsS
# 2: BPUM_3271___alsS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1853
# Identity: 1207/1853 (65.1%)
# Similarity: 1207/1853 (65.1%)
# Gaps: 289/1853 (15.6%)
# Score: 3797.0
#
#
#=======================================
BSNT_05487___ 1 GTGTTGACAAAAGCAACAA-----AAGAACAAAAATCCCTTGTGAAAAAC 45
|..|| |||.|||| |||.| ||.||.
BPUM_3271___a 1 --------------ATGAATTCTCAAGCACAA----CCCCT---AACAAG 29
BSNT_05487___ 46 A-GAGGGGCGGA---GCTTGTT-----GTTGATTGCTTGGTGGAGCAAGG 86
| ||||.||.|| |.||||| |.|||||||| |||||
BPUM_3271___a 30 ACGAGGAGCAGAATTGATTGTTGATACGCTGATTGCT--------CAAGG 71
BSNT_05487___ 87 TGTCACACATGTATTTGGCATTCCAGGTGCAAAAATTGATGCGGTATTTG 136
|||.||.|||||.||||..||||||||||||||||||||.||.|||||||
BPUM_3271___a 72 TGTGACCCATGTTTTTGCGATTCCAGGTGCAAAAATTGACGCCGTATTTG 121
BSNT_05487___ 137 ACGCTTTACAAGATAAAGGACCTGAAATTATCGT-TGCTCGGCACGAACA 185
|.|..|||.||||.|.|||.||.||..||.||.| ||| .|.||||||||
BPUM_3271___a 122 ATGTATTAAAAGACAGAGGTCCAGAGCTTGTCCTATGC-AGACACGAACA 170
BSNT_05487___ 186 AAACGCAGCATTCATGGCCCAAGCAGTCGGCCGTTTAACTGGAAAACCGG 235
|||.||.||.||.|||||....||.|||||||||||||||||.|||||.|
BPUM_3271___a 171 AAATGCCGCCTTTATGGCAGCTGCTGTCGGCCGTTTAACTGGCAAACCAG 220
BSNT_05487___ 236 GAGTCGTGT-TAGTCACATCAGGACCGGGTGCCTCTAACTTGGCAACAGG 284
|.|| .||| |.|||||||||||.||.||.||.|||||.||.||||||||
BPUM_3271___a 221 GTGT-TTGTCTCGTCACATCAGGTCCTGGCGCATCTAATTTAGCAACAGG 269
BSNT_05487___ 285 CCTGTTGACAGCGAACACTGAAGGAGACCCTGTCGTTGCGCTTGCTGGAA 334
.||.||.|||||.||.||.|||||.||||||.|.||.||..|.|||||||
BPUM_3271___a 270 TCTATTAACAGCTAATACAGAAGGTGACCCTATTGTCGCAATCGCTGGAA 319
BSNT_05487___ 335 ACGTGATCCGTGCAGATCGTTTAAAACGGACACATCAATCTTTGGATAAT 384
||||.||.|||||.|||||..|.|||||.|||||||||||..|.||.|||
BPUM_3271___a 320 ACGTCATTCGTGCTGATCGGCTCAAACGAACACATCAATCACTCGACAAT 369
BSNT_05487___ 385 GCGGCGCTATTCCAGCCGATTACAAAATACAGTGTAGAAGTTCAAGATGT 434
|||||..|||||.|.||..|.||||||||||||||.|||||.|||||.||
BPUM_3271___a 370 GCGGCATTATTCAAACCAGTAACAAAATACAGTGTTGAAGTACAAGACGT 419
BSNT_05487___ 435 AAAAAATATACCGGAAGCTGTTACAAATGCGTTTAGGATAGCGTCAGCA- 483
..|.||||||||.|||||..|.||||||||.|||.| .|||.|| ||
BPUM_3271___a 420 TCATAATATACCCGAAGCCTTAACAAATGCTTTTCG---CGCGGCA-CAA 465
BSNT_05487___ 484 ---GGGCAGGCTGGGGCCGCTTTTGTGAGCTTTCCGCAAGATGTTGTGAA 530
|||||||||||.||.||.|||.|.||||||||.||||||||.||||.
BPUM_3271___a 466 AAGGGGCAGGCTGGAGCAGCATTTATCAGCTTTCCACAAGATGTCGTGAC 515
BSNT_05487___ 531 TGAAGTCACA-AATACGAAAAAC--GTGCGTGCTGTTGCA----GCACCA 573
.||| |||| .|.|| |||.|| |||..|||| || .|.|||
BPUM_3271___a 516 AGAA--CACACCACAC-AAACACCAGTGTCTGCT----CACCCTTCTCCA 558
BSNT_05487___ 574 AAACTCGGTCCTGCAGCAGATGATGCAATCAGTGCGGCCATAGCAAAAAT 623
.||||.|||||||||.|.||||.|...|||||..||||.||.||.|||||
BPUM_3271___a 559 GAACTAGGTCCTGCACCGGATGCTCTCATCAGCTCGGCTATCGCCAAAAT 608
BSNT_05487___ 624 CCAAACAGCAAAACTT-CCTGTCGTTTTGGTCGGCATGAAAG-------- 664
.||||..|| |.|||| |||||.|...|.||.||.|||||||
BPUM_3271___a 609 TCAAAATGC-ACACTTACCTGTTGCCATTGTGGGAATGAAAGCAAGTCGT 657
BSNT_05487___ 665 ------GCGG--AAGACCGGAAGCA-ATTAAAGCGGTTCGCAAGCTTTTG 705
||.| |||.|...|||.| |||| |||
BPUM_3271___a 658 CCAGCTGCTGCAAAGGCTACAAGAACATTA-----------------TTG 690
BSNT_05487___ 706 AAAAAGGTTCAGCTTCCATTTGTTGAAACATATCAAGCTGCCGGTACCCT 755
||||...||....|||||||||||||||||||.||||..||||| |.
BPUM_3271___a 691 AAAACACTTGGAATTCCATTTGTTGAAACATACCAAGGAGCCGG----CG 736
BSNT_05487___ 756 TTCT----AGAGATTTAGAGGATCAGTATTTTGGCCGTATCGGTTTGTTC 801
|||| |||||..|.|||..|||.|||.|.|||.|.||||||||.|||
BPUM_3271___a 737 TTCTCTCAAGAGAGCTTGAGTCTCAATATGTAGGCAGAATCGGTTTATTC 786
BSNT_05487___ 802 CGCAACCAGCCTGGCGATTTACTGCTAGAGCAGGCAGATGTTGTTCTGAC 851
||.||.|||||.||.|||.|.||..|.||.||.||||||||..||.|||.
BPUM_3271___a 787 CGAAATCAGCCGGGAGATCTTCTCATTGAACAAGCAGATGTCCTTTTGAG 836
BSNT_05487___ 852 GATCGGCTATGACCCAATTGAATATGATCCAAA--ATTCTGGAATGTCAA 899
.|||||||.|||.|||||||||||||||||||| || |||||| |
BPUM_3271___a 837 CATCGGCTTTGATCCAATTGAATATGATCCAAAGCAT--TGGAAT----A 880
BSNT_05487___ 900 TGGAGACCG-------GACA-ATTATCCATTTAGACGAGATTATCGCTGA 941
|..|| ||| |||| ||.||||||.|.||.||.||....||.||
BPUM_3271___a 881 TTCAG-CCGAAGCAGCGACAGATCATCCATGTCGATGACATGCAGGCAGA 929
BSNT_05487___ 942 CATTGATCATGCTTACCAGCC------TGATCTTG-----AATTGATCGG 980
.|||||||||..||||.|||| |||.|||| ||| ||.|.
BPUM_3271___a 930 TATTGATCATTTTTACGAGCCGGCACTTGAGCTTGTCGGCAAT--ATAGC 977
BSNT_05487___ 981 TGACATTCCGTCCACGATTAATCATATCGAACACGATGCTGTGAAAGTG- 1029
||| .||.|||||.|||.|.|..|| |||.||||
BPUM_3271___a 978 TGA---------AACCATTAAACATCTAGCCCA--------TGACAGTGT 1010
BSNT_05487___ 1030 -GAA-------TTTGCAGAGCGTGAGCAGA----AAATCCTTTCTGATTT 1067
.|| |.||||.| ||.|| | ||.||.||.||||.||
BPUM_3271___a 1011 TCAACTTTCTCTATGCAAA----GAACA-AGTTGAATTCGTTACTGAATT 1055
BSNT_05487___ 1068 AAAACAATATATGCATGAAGGTGAGCAGGTGCCTG------CAGATTGGA 1111
|||||.| ||| .|.||||.|
BPUM_3271___a 1056 ------------------------GCAGGAG-CTGTTAAGCGACATTGAA 1080
BSNT_05487___ 1112 A----ATCAGACAGAG------------CGCACCCTCTTGAAATCGT--- 1142
| |.||||.|||| |.||.||.||.||..||.|
BPUM_3271___a 1081 AAAGCACCAGAAAGAGAAAGTCATCTATCTCATCCGCTGGATGTCATTCA 1130
BSNT_05487___ 1143 ----TAAAGAGTTGCGTAATGCAGTC--GATGATCATGTTACAGTAACTT 1186
|.|||| .||.|.|| || ||||| ||.| |..||.||||
BPUM_3271___a 1131 TACATTAAGA--CGCTTGAT----TCCTGATGA-CACG--AAGGTCACTT 1171
BSNT_05487___ 1187 GCGATATCGGTTCGCACGCCATTTGGATGTCACGTTATTTCCGCAGCTAC 1236
|.||||||||.||.|||||.|||||||||||.|||.||||||||..|||.
BPUM_3271___a 1172 GTGATATCGGGTCTCACGCAATTTGGATGTCGCGTCATTTCCGCGTCTAT 1221
BSNT_05487___ 1237 GAGCCGTTAACATTAATGATCAGTAACGGTATGCAAACACTCGGCGTTGC 1286
||||||...|||||..|..|.||.|||||.|||||||||.|.||||||||
BPUM_3271___a 1222 GAGCCGAACACATTCCTTGTGAGCAACGGGATGCAAACATTAGGCGTTGC 1271
BSNT_05487___ 1287 GCTT-CCTTGGGCAATCGGCGCTTCATTGGTGAAACCGGGAGAAAAAGTG 1335
||| ||.|||||.||.|..|||||..|..||||.||.|..|||||..|.
BPUM_3271___a 1272 -CTTACCATGGGCCATTGCGGCTTCCATATTGAATCCAGATGAAAAGATC 1320
BSNT_05487___ 1336 GTTTCTGTCTCTGGTGACGGCGGTTTCTTATTCTCAGCAATGGAATTAGA 1385
|||||.|||||||||||.||||||||..|.|||||.||||||||..||||
BPUM_3271___a 1321 GTTTCGGTCTCTGGTGATGGCGGTTTTCTCTTCTCTGCAATGGAGCTAGA 1370
BSNT_05487___ 1386 GACAGCGGTACGACTAAAAGCACCAA--TTGTACACATTGTATGGAACGA 1433
.|||||.||.||..|.||| ||.|| |.||.|||.||||.|||||.||
BPUM_3271___a 1371 AACAGCCGTCCGCATGAAA--ACAAATCTCGTTCACCTTGTTTGGAATGA 1418
BSNT_05487___ 1434 CAGCACATATGACATGGTTGCATTCCAGCAATTGAAA--AAATATAACCG 1481
|||||||||.||.|||||.|||||.||||| .|||| ||||||.||||
BPUM_3271___a 1419 CAGCACATACGATATGGTGGCATTTCAGCA--GGAAATGAAATATGACCG 1466
BSNT_05487___ 1482 TACAT-CTGCGGTCGATTTCGGAAATATCGATATCGTGAAATATGCGGAA 1530
.|||| |||| ||.||.||||||.|.|||||..|.|||||||||||.|||
BPUM_3271___a 1467 CACATCCTGC-GTTGAATTCGGACAGATCGACTTAGTGAAATATGCAGAA 1515
BSNT_05487___ 1531 AGCTTCGGAGCGACTGGCTTGCGCGTAGAATCACCAGACCAGCTGGCAGA 1580
|||||.|||||||||||.||.||.|||.|.|||||.||..||||..||..
BPUM_3271___a 1516 AGCTTTGGAGCGACTGGATTACGAGTAAACTCACCTGAAGAGCTTTCAAC 1565
BSNT_05487___ 1581 TGTTCTGCGTCAA---GGCATGAACGCTGAAGGTCCTGTCATCATCGATG 1627
|||.|| |||| ||.||.|||...|||||.|||||.||.||.|||.
BPUM_3271___a 1566 TGTCCT---TCAAAAGGGTATAAACATAGAAGGACCTGTTATTATTGATA 1612
BSNT_05487___ 1628 TCCCGGTTGACTA-CAGTGATAACATTAATTTAGCAAGTGACAAGCTTCC 1676
|.|||.||||||| || .||.|||....|..|.||.|||.|.||....||
BPUM_3271___a 1613 TTCCGATTGACTATCA-AGACAACCCAGACCTCGCCAGTCAAAAATGGCC 1661
BSNT_05487___ 1677 GAAAGAA----TTCGGGGAACTCA-----TGAAAACGAAAGCTCTCTAG- 1716
|||| ||||.|.|||.|| |||| |..|||
BPUM_3271___a 1662 ---AGAAGTCTTTCGTGAAACACACACATTGAA----------CGTTAGA 1698
BSNT_05487___ 1716 --- 1716
BPUM_3271___a 1699 TAA 1701
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