Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05502 and BPUM_3269
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_05502___ywrF.1.24716.seq
# -bsequence dna-align/BPUM_3269___ywrF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05502___ywrF-BPUM_3269___ywrF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05502___ywrF-BPUM_3269___ywrF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05502___ywrF
# 2: BPUM_3269___ywrF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 668
# Identity: 422/668 (63.2%)
# Similarity: 422/668 (63.2%)
# Gaps: 115/668 (17.2%)
# Score: 1307.5
#
#
#=======================================
BSNT_05502___ 1 ATGTACATATTTCAAGCTGATCAGCTTAGTGCC--AAAGACACATACAAG 48
||| |||||||| .|..| |||||..||||.||.
BPUM_3269___y 1 ATG---------------GATCAGCT--ATCACGAAAAGAAGCATATAAA 33
BSNT_05502___ 49 CTATTGTCAGGTACCGTTATTCCCCGCCCCATTGCATTTGTGACAACACT 98
.||||.||.|||.|..||.||||.||.||.|||||.|||.|.||||..||
BPUM_3269___y 34 TTATTATCGGGTTCTATTGTTCCACGACCGATTGCGTTTATTACAAGTCT 83
BSNT_05502___ 99 TTCTTCAGAAGGAGCG-----GTCAATGCCGCGCCTTTCAGTTTTTATAA 143
.|||..||| || |||||||||||.||.||.|||||.|.|||
BPUM_3269___y 84 GTCTAAAGA-----CGATATCGTCAATGCCGCACCATTTAGTTTCTTTAA 128
BSNT_05502___ 144 CGTCGTCAGCTCAGATCCTCCGCTTCTCAGTATTTCTGTTAACAGGACG- 192
.|||.|||||..|.|.||.|||||.|||....||||| |..|||||
BPUM_3269___y 129 TGTCATCAGCGGACACCCACCGCTCCTCGCCGTTTCT----ATCGGACGA 174
BSNT_05502___ 193 ---GAAGGACGCCAA----AAAGATACAGCGCGAAACGCA-GTG---GAG 231
|||||.| | ||||||||||||| .||| ||| ||.
BPUM_3269___y 175 CGAGAAGGTC----AGATGAAAGATACAGCGC----AGCATGTGATTGAC 216
BSNT_05502___ 232 AACGGAGAATTTGTCGTTCATGTCAGTGATGAAGCCATCATTGAAGATAT 281
|..|||||||||||.||.|||||.|||||||||||.||.||.||||||||
BPUM_3269___y 217 AGGGGAGAATTTGTGGTCCATGTGAGTGATGAAGCGATAATAGAAGATAT 266
BSNT_05502___ 282 CAATGAAACAGCTGC-AAGCTTAAGGCC---GGATGAAAGCGAGCTTACA 327
.||.||||||||||| |.||| ||| |||.||.||.|||||....
BPUM_3269___y 267 TAACGAAACAGCTGCTACGCT----GCCACAGGAAGAGAGTGAGCTGGAT 312
BSNT_05502___ 328 CGCACCTCGCTTCATCCTGTTGAAAGCAAAGCTGTTTCAGTTCCCGGCAT 377
||.|||...|||||||..||..|.|||.|.|..|||||||||||.||.||
BPUM_3269___y 313 CGAACCGGTCTTCATCAAGTACAGAGCCATGTCGTTTCAGTTCCGGGAAT 362
BSNT_05502___ 378 TAAGGAAGCCCGCGTTCGCTTTGA--------GTGCAAATTAGAGCGGCA 419
|.|||||||.||..|||||||||| .||.||| |||
BPUM_3269___y 363 TCAGGAAGCACGTATTCGCTTTGAATGTCGGCTTGAAAA--------GCA 404
BSNT_05502___ 420 TATTACCTTTGACAATGATCAAGG---CATCACTACAGCAGATCTGCTCA 466
|.||||||||.|.||||||.|||| .||| ||.|..||||...|||
BPUM_3269___y 405 TCTTACCTTTCAAAATGATGAAGGGGAGATC---ACGGTCGATCATATCA 451
BSNT_05502___ 467 TCGGAAGGGTTGTCTGCTTC-CACCTAGATGAAAAGGTGTATGATGCAGA 515
|.||..|||||||.|| |.| ||..|||||||....|||||||||||.||
BPUM_3269___y 452 TTGGCCGGGTTGTGTG-TGCGCATTTAGATGAGGCTGTGTATGATGCGGA 500
BSNT_05502___ 516 AAAGGGATATATTTTAACGGATGAATTAAAACCTGCCTCACGATTGGCGG 565
|||.||.|||.|||..||..||||||||||.||.|.|.||||.||.||||
BPUM_3269___y 501 AAAAGGTTATGTTTCGACTCATGAATTAAAGCCAGTCGCACGTTTAGCGG 550
BSNT_05502___ 566 GAAATCACTATGCCAAGCTGGGGGAAGAATTCACAC-TGATTCGTCCCAG 614
|||||.|.||.|||.|..|.||| || |.|||.|| |
BPUM_3269___y 551 GAAATGATTACGCCCATTTAGGG-----------ACGTCATTTGT----G 585
BSNT_05502___ 615 CTGA-------------- 618
||||
BPUM_3269___y 586 CTGAAAAGACCAGAATAA 603
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