Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05479 and BPUM_3266
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_05479___rbsA.1.24716.seq
# -bsequence dna-align/BPUM_3266___rbsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05479___rbsA-BPUM_3266___rbsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05479___rbsA-BPUM_3266___rbsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05479___rbsA
# 2: BPUM_3266___rbsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1522
# Identity: 1073/1522 (70.5%)
# Similarity: 1073/1522 (70.5%)
# Gaps: 80/1522 ( 5.3%)
# Score: 3535.5
#
#
#=======================================
BSNT_05479___ 1 ATGCAGATTGAAATGAAAGACATTCATAAAGCATTCGGAAAAAACCAGGT 50
|||.|.|||||.|||.|..||||.|||||.||.||.|||||||||...||
BPUM_3266___r 1 ATGAACATTGAGATGCATAACATCCATAAGGCCTTTGGAAAAAACACCGT 50
BSNT_05479___ 51 GCTATCAGGCGTTTCTTTTCAGCTCTTACCTGGCGAGGTTCACGCGTTAA 100
.||.||.||.||.||.|||.|.|||.|..|.||.|||||.||||||.|.|
BPUM_3266___r 51 TCTTTCCGGGGTCTCCTTTGACCTCGTCACAGGTGAGGTCCACGCGCTCA 100
BSNT_05479___ 101 TGGGAGAAAACGGCGCCGGCAAGTCCACGCTTATGAACATTCTGACAGGC 150
||||.|||||.|||||.||.||.||.||..|.||||||.|.||.|||||.
BPUM_3266___r 101 TGGGTGAAAATGGCGCAGGAAAATCAACTTTAATGAACCTGCTCACAGGT 150
BSNT_05479___ 151 CTGCACAAATCGGATCAAGGTCAA--ATCAGCATAAACG-GAAACGAAAC 197
||..|...||..||.||.|| || ||.|..||..||| |||| |||||
BPUM_3266___r 151 CTTTATTCATTAGACCAGGG--AACGATTAATATCGACGAGAAA-GAAAC 197
BSNT_05479___ 198 GTATTTTTCCAATCCGAAAGAAGCAGAACAGCATGGAATAGCCTTTATCC 247
...|||....||||||||||||||.|||||.||.||.||.||||||||.|
BPUM_3266___r 198 CGCTTTCAAAAATCCGAAAGAAGCGGAACAACACGGTATCGCCTTTATTC 247
BSNT_05479___ 248 ATCAGGAATTGAATATCTGGCCGGAAATGACTGTTCTGGAGAATCTATTT 297
||||.||..|.||.||.||||||||.|||||.||..||||.||.|||||.
BPUM_3266___r 248 ATCAAGAGCTCAACATATGGCCGGATATGACCGTCTTGGAAAACCTATTC 297
BSNT_05479___ 298 ATCGGTAAAGA----GATATCCTCCAAGCTGGGCGTTTTACAAACAAGAA 343
|||||.||||| .||| |.|||.|.||..|..||.|.||||..|
BPUM_3266___r 298 ATCGGGAAAGAACTCTATA----CGAAGTTTGGATTGCTAGACACAAAGA 343
BSNT_05479___ 344 AAATGAAAGCGCTAGC-AAAAG--AGCAATTTGACAAACTCTCTGT---- 386
|||||||.|..||.|| .|||| ||| |.|||..|.|.|||||
BPUM_3266___r 344 AAATGAAGGTTCTTGCTCAAAGCCAGC---TGGACCGATTGTCTGTGAAC 390
BSNT_05479___ 387 CTCTCTTTCTCTCGATCAAGAAGCCGGCGAATGTTCTGTCGGACAGCAGC 436
||| ||.||.|||.||||.||.|||...||||||||.||.||..|.|
BPUM_3266___r 391 CTC----TCGCTTGATGAAGAGGCAGGCAGCTGTTCTGTTGGTCAAAAAC 436
BSNT_05479___ 437 AAATGATCGAAATCGCAAAAGCGCTTATGACAAATGCCGAGGTAATCATT 486
|.|||||.||.||.|||||.||..|.|||||..||||..||||.|||||.
BPUM_3266___r 437 AGATGATTGAGATTGCAAAGGCATTAATGACGGATGCGAAGGTCATCATC 486
BSNT_05479___ 487 ATGGATGAACCGACCGCAGCGTTGACTGAACGTGAAATCAGCAAGCTCTT 536
|||||||||||.||.|||||..|.||.||||||||.||....||.|||||
BPUM_3266___r 487 ATGGATGAACCAACGGCAGCTCTAACAGAACGTGAGATTGAAAAACTCTT 536
BSNT_05479___ 537 TGAGGTCATTACAGC-GTTAAAAAAGAACGGCGTCTCCATTGTCTATATT 585
|.||||.|||..|.| .|.||||||||| |||||.|||||.|||||||||
BPUM_3266___r 537 TCAGGTTATTGAATCTCTCAAAAAAGAA-GGCGTATCCATCGTCTATATT 585
BSNT_05479___ 586 TCGCATCGCATGGAAGAAATTTTTGCGATTTGCGACAGAATTACCATCAT 635
||.||.||.|||||.||||||||||||||.||||||.|.|||||.|||||
BPUM_3266___r 586 TCTCACCGTATGGAGGAAATTTTTGCGATCTGCGACCGGATTACAATCAT 635
BSNT_05479___ 636 GCGTGACGGAAAAACGGTGGATACAACAAACATCTCAGAAACTGATTTTG 685
||||||.||.||||||||.|||||.|.|..|||..|.|||||..||||..
BPUM_3266___r 636 GCGTGATGGGAAAACGGTCGATACGAAAGCCATACCTGAAACGAATTTCC 685
BSNT_05479___ 686 ATGACGTCGTCAAAAAAATGGTCGGACGGGAGCTGACTGAACGATATCC- 734
||||.||||||||||||||||||||.||.||..|.||.||.|||||.||
BPUM_3266___r 686 ATGAGGTCGTCAAAAAAATGGTCGGCCGCGAATTAACAGATCGATACCCT 735
BSNT_05479___ 735 ---AAAACGCACTCCTTCTCTCGGTGACAAAGTATTCGAGGTGAAAAATG 781
|.|||| ||||||||.||.||.|...|..|.|||||.||..|.|
BPUM_3266___r 736 GAGAGAACG----CCTTCTCTAGGAGATACGATCCTTGAGGTAAAGCAAG 781
BSNT_05479___ 782 CCTCTGTAAAAGGGAGTTTTGAAGATGTCAGCTTTTATGTTCGGTCCGGT 831
|.||...||||||....|||.|||||.||||.||.|..|||....|.||.
BPUM_3266___r 782 CGTCAAGAAAAGGACAATTTCAAGATATCAGTTTCTCCGTTAAAGCTGGA 831
BSNT_05479___ 832 GAAATCGTCGGTGTTTCAGGATTGATGGGAGCCGGCCGTACAGAAATGAT 881
||||||||||||.||.||||.||.|||||.||.|||.|.||.||||||||
BPUM_3266___r 832 GAAATCGTCGGTATTGCAGGCTTAATGGGCGCTGGCAGGACCGAAATGAT 881
BSNT_05479___ 882 GAGAGCGCTGTTCGGCGTTGACAGGCTGGA-CACGGGTGAGATATGG--- 927
|.|..|.|||||.||..||||....||.|| ||.||| ||.||.|||
BPUM_3266___r 882 GCGGTCACTGTTTGGTCTTGATTCTCTTGATCAAGGG-GAAATCTGGGTT 930
BSNT_05479___ 928 -ATCGCTGGGAAAAAAACGGCT---ATTAAGAACCCGCAG-GAAGCCGTG 972
|| |||||||| |||| |||||.||.|| .|| ||.|||||
BPUM_3266___r 931 CAT-----GGAAAAAA--GGCTGTCATTAAAAAACC-AAGTGATGCCGT- 971
BSNT_05479___ 973 AAAAAAGGTC----TCGGCTTTATTACAGAGAATCGCAAGGATGAAGGGC 1018
.|||.|| |||||||||||||||||.|||||||.||||||||.|
BPUM_3266___r 972 ---CAAGCTCGGCATCGGCTTTATTACAGAGGATCGCAAAGATGAAGGAC 1018
BSNT_05479___ 1019 TCCTGCTCGACACCTCGATCCGCGAAAATATTGCCCTGCCCAATCTGTCC 1068
|..||||.||..|.||.||.||.|||||.||||..|||||.||..|....
BPUM_3266___r 1019 TTATGCTGGATGCTTCCATTCGAGAAAACATTGGTCTGCCAAACTTAAAA 1068
BSNT_05479___ 1069 AGCTTCTCACCAAAGGGGCTCATTGATCACAAGCGGGAGGCTGAGTTTGT 1118
||||||||.||||||||.||.||.|||.|.||....||....||.|||||
BPUM_3266___r 1069 AGCTTCTCTCCAAAGGGACTGATCGATAAAAAAAACGAACAGGATTTTGT 1118
BSNT_05479___ 1119 CGATCTGTTAATTAAACGCCTCACTATCAAAACAGCATCACCGGAAA-CG 1167
.||.||..|.||.|||.|..|.||.||.|||||.||.||..|.|||| |.
BPUM_3266___r 1119 TGACCTCCTTATCAAAAGATTGACGATTAAAACGGCTTCCTCTGAAATCT 1168
BSNT_05479___ 1168 CACGCACGCCATTTGTCAGGTGGAAACCAGCAAAAAGTGGTGATAGCCAA 1217
| .||.|||..|.|.||.||||||||.|||||||||||.||.||.|||||
BPUM_3266___r 1169 C-TGCTCGCAGTCTCTCTGGTGGAAATCAGCAAAAAGTCGTCATCGCCAA 1217
BSNT_05479___ 1218 GTGGATCGGCATCGGACTGAAAGTGCTT-ATCTTGGATGAGCCAACCAGA 1266
.||||||||||||...|.|||.|| ||| ||.||.|||||.||.||.|||
BPUM_3266___r 1218 ATGGATCGGCATCCAGCCGAAGGT-CTTGATTTTAGATGAACCGACAAGA 1266
BSNT_05479___ 1267 GGTGTGGATGTTGGCGCCAAACGAGAGATTTATACGCTGATGAATGAGCT 1316
|||||.||.||.||.||.||.|||||.||.||...|.|.||||||||.||
BPUM_3266___r 1267 GGTGTCGACGTCGGAGCGAAGCGAGAAATCTACCAGTTAATGAATGAACT 1316
BSNT_05479___ 1317 GACCGAACGCGGCGTCGCTATCATCATGGTGTCATCAGAGCTGCCTGAAA 1366
||||||.||.||.||.||.||..|.|||||.||.||.|||||.||.||||
BPUM_3266___r 1317 GACCGATCGAGGTGTTGCCATTTTAATGGTCTCCTCTGAGCTACCAGAAA 1366
BSNT_05479___ 1367 TTCTGGGAATGAGCGATCG---GATTATCGTTGTCCATGAAGGCAGAATC 1413
||.|.||.||||||||||| |.||.||.|| ||||||||.|..|||
BPUM_3266___r 1367 TTTTAGGGATGAGCGATCGAGTGCTTGTCATT---CATGAAGGAACCATC 1413
BSNT_05479___ 1414 AGCGGAGAAATCCAT---GCGCGAGAAGCAACACAAGAACGAATTATGAC 1460
|||||||||.|..|| || |||.|||||||||||||||||||||||
BPUM_3266___r 1414 AGCGGAGAAGTAAATAAAGC---AGACGCAACACAAGAACGAATTATGAC 1460
BSNT_05479___ 1461 ACTTGCCACGGGAGGGCGGTAA 1482
||||||.||.||||||..||||
BPUM_3266___r 1461 ACTTGCTACAGGAGGGAAGTAA 1482
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