Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05478 and BPUM_3265
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_05478___rbsD.1.24716.seq
# -bsequence dna-align/BPUM_3265___rbsD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05478___rbsD-BPUM_3265___rbsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05478___rbsD-BPUM_3265___rbsD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05478___rbsD
# 2: BPUM_3265___rbsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 420
# Identity: 268/420 (63.8%)
# Similarity: 268/420 (63.8%)
# Gaps: 51/420 (12.1%)
# Score: 787.0
#
#
#=======================================
BSNT_05478___ 1 ATGAAAAAACACGGTATACTGAACAGCCATCTTGCCAAGATTTTAGCAGA 50
|||||||||.||||.||.||.|||||||||.|.||||||.|..|.||.||
BPUM_3265___r 1 ATGAAAAAAAACGGCATCCTAAACAGCCATATCGCCAAGGTACTTGCTGA 50
BSNT_05478___ 51 CCTTGGCCACACTGATAAAATTGTCATCGCGGATGCCGGACTGCCGGTTC 100
||||||.||.||.||||.|||.||||||||.|||..|||.|||||..|||
BPUM_3265___r 51 CCTTGGACATACAGATACAATCGTCATCGCAGATTGCGGCCTGCCTATTC 100
BSNT_05478___ 101 CCGACGGCGTTT----TGAAAATTGATCTTTCACTGAAGCCGGGCCTTCC 146
|.||.|| | |.|||||.||.||.|||.|.|.|...|||...||
BPUM_3265___r 101 CAGAAGG----TCCAGTCAAAATCGACCTATCATTAACGATCGGCACACC 146
BSNT_05478___ 147 GGCTTTCCAAGATACAGCGG------CAGTACTGGCTGAGGAAATGGCGG 190
..||||.||.|| || |..|.||...|.||||||||||||
BPUM_3265___r 147 ATCTTTTCAGGA------GGTCACCTCCCTCCTTCTTCAGGAAATGGCGG 190
BSNT_05478___ 191 TCGAAAAAGTCATTGCTGCAGC---TGAAATAAAAGCATCCAATCAGGAG 237
|.|||.| ||||.|.|..|| ||||||..|||.|.|||||.|
BPUM_3265___r 191 TTGAACA---CATTACGGTGGCTAGTGAAATCCAAGAAGCCAATGA---- 233
BSNT_05478___ 238 AATGCGAG-------ATTTCTAGA-AAATCTTTTCTCTGAA-CAAGAGAT 278
||||| |||||||.| |||.| .|||||..|| ||..|.||
BPUM_3265___r 234 ---GCGAGATCATCTATTTCTAAAGAAAGC-GTTCTCAAAACCATTACAT 279
BSNT_05478___ 279 --TGAATACCTTTCTCACGAGGAGTTTAAGCTGCTGACAAAAGAAGCAAA 326
||.|.|| ||||||..|||.||.....||||.|||.|.|||||
BPUM_3265___r 280 GATGTAGAC------CACGAGACGTTCAAAGACATGACCAAACAGGCAAA 323
BSNT_05478___ 327 GGCAGTCATAAGAACAGGAGAATTCACACAGTATGCCAACTGCATCCTGC 376
.|||||||||.|.||.||.|||..|||.|..||.||.||||||||.||.|
BPUM_3265___r 324 AGCAGTCATACGCACGGGTGAAGCCACCCCATACGCAAACTGCATTCTTC 373
BSNT_05478___ 377 AGGCGGGTGTGCTTTTCTAG 396
|.||.|||||..|.||.||.
BPUM_3265___r 374 ATGCCGGTGTCATCTTTTAA 393
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