Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05478 and BPUM_3265

See Amino acid alignment / Visit BSNT_05478 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence dna-align/BSNT_05478___rbsD.1.24716.seq
#    -bsequence dna-align/BPUM_3265___rbsD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05478___rbsD-BPUM_3265___rbsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05478___rbsD-BPUM_3265___rbsD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05478___rbsD
# 2: BPUM_3265___rbsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 420
# Identity:     268/420 (63.8%)
# Similarity:   268/420 (63.8%)
# Gaps:          51/420 (12.1%)
# Score: 787.0
# 
#
#=======================================

BSNT_05478___      1 ATGAAAAAACACGGTATACTGAACAGCCATCTTGCCAAGATTTTAGCAGA     50
                     |||||||||.||||.||.||.|||||||||.|.||||||.|..|.||.||
BPUM_3265___r      1 ATGAAAAAAAACGGCATCCTAAACAGCCATATCGCCAAGGTACTTGCTGA     50

BSNT_05478___     51 CCTTGGCCACACTGATAAAATTGTCATCGCGGATGCCGGACTGCCGGTTC    100
                     ||||||.||.||.||||.|||.||||||||.|||..|||.|||||..|||
BPUM_3265___r     51 CCTTGGACATACAGATACAATCGTCATCGCAGATTGCGGCCTGCCTATTC    100

BSNT_05478___    101 CCGACGGCGTTT----TGAAAATTGATCTTTCACTGAAGCCGGGCCTTCC    146
                     |.||.||    |    |.|||||.||.||.|||.|.|.|...|||...||
BPUM_3265___r    101 CAGAAGG----TCCAGTCAAAATCGACCTATCATTAACGATCGGCACACC    146

BSNT_05478___    147 GGCTTTCCAAGATACAGCGG------CAGTACTGGCTGAGGAAATGGCGG    190
                     ..||||.||.||      ||      |..|.||...|.||||||||||||
BPUM_3265___r    147 ATCTTTTCAGGA------GGTCACCTCCCTCCTTCTTCAGGAAATGGCGG    190

BSNT_05478___    191 TCGAAAAAGTCATTGCTGCAGC---TGAAATAAAAGCATCCAATCAGGAG    237
                     |.|||.|   ||||.|.|..||   ||||||..|||.|.|||||.|    
BPUM_3265___r    191 TTGAACA---CATTACGGTGGCTAGTGAAATCCAAGAAGCCAATGA----    233

BSNT_05478___    238 AATGCGAG-------ATTTCTAGA-AAATCTTTTCTCTGAA-CAAGAGAT    278
                        |||||       |||||||.| |||.| .|||||..|| ||..|.||
BPUM_3265___r    234 ---GCGAGATCATCTATTTCTAAAGAAAGC-GTTCTCAAAACCATTACAT    279

BSNT_05478___    279 --TGAATACCTTTCTCACGAGGAGTTTAAGCTGCTGACAAAAGAAGCAAA    326
                       ||.|.||      ||||||..|||.||.....||||.|||.|.|||||
BPUM_3265___r    280 GATGTAGAC------CACGAGACGTTCAAAGACATGACCAAACAGGCAAA    323

BSNT_05478___    327 GGCAGTCATAAGAACAGGAGAATTCACACAGTATGCCAACTGCATCCTGC    376
                     .|||||||||.|.||.||.|||..|||.|..||.||.||||||||.||.|
BPUM_3265___r    324 AGCAGTCATACGCACGGGTGAAGCCACCCCATACGCAAACTGCATTCTTC    373

BSNT_05478___    377 AGGCGGGTGTGCTTTTCTAG    396
                     |.||.|||||..|.||.||.
BPUM_3265___r    374 ATGCCGGTGTCATCTTTTAA    393


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