Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05468 and BPUM_3255
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_05468___ywtD.1.24716.seq
# -bsequence dna-align/BPUM_3255___ywtD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05468___ywtD-BPUM_3255___ywtD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05468___ywtD-BPUM_3255___ywtD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05468___ywtD
# 2: BPUM_3255___ywtD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1466
# Identity: 827/1466 (56.4%)
# Similarity: 827/1466 (56.4%)
# Gaps: 346/1466 (23.6%)
# Score: 2081.5
#
#
#=======================================
BSNT_05468___ 1 ATGAGACACTCTCTTTTTATTTGCCCAGCATATTCATTCTGTAAAAATAT 50
BPUM_3255___y 0 -------------------------------------------------- 0
BSNT_05468___ 51 CAAAAAGTCTCTTAACATATTCAAAAAAATACCGATGTTAAAACTGCAAA 100
||| ||.||.||
BPUM_3255___y 1 ----------------------------------ATG----AAATGGAA- 11
BSNT_05468___ 101 AAGAGGAGGAGATAATAAAAGTGAACACACTGGCAAACTGGAAGAAGTTT 150
||| ||.|||| |.||| ||| ||.|
BPUM_3255___y 12 ------AGG-------AATAGTG-----ATTGG-----TGG-----GTGT 33
BSNT_05468___ 151 TTGCTTGTGGCGGTTATCATTTGTTTTTTGGTTCCAATTATGACAAAAGC 200
..|||.||.|.|.|.| ||||..| ||..|||| ||.||||
BPUM_3255___y 34 GCGCTCGTAGGGCTGA-----TGTTCAT--GTCTCAAT-----CAGAAGC 71
BSNT_05468___ 201 GGAGATTGCGGAAGCTGATACATCATCAGAATTGATTGTCAGCGAAGCAA 250
||.|| ||.|.|||.|||| |..||..||.| ||||..
BPUM_3255___y 72 --AGCTT-------CTCAAACAGCATC-----TCCTTTGCAAC-AAGCGG 106
BSNT_05468___ 251 AAAACCTGCTTGGA------TATCAGTATAAATATGGCGG-GGAAACG-- 291
||||..||.||||| |||| ||||| || ||||.||
BPUM_3255___y 107 AAAAGTTGATTGGATCACCCTATC---ATAAA------GGAGGAACCGAT 147
BSNT_05468___ 292 CCGAAAGAGGGTTTCGATCCATCAGGATTGATACAATATGTGTTCA---- 337
||.|||..|||.||.||..|||||||.||.|..||||||||||.||
BPUM_3255___y 148 CCAAAAACGGGCTTTGACGCATCAGGGTTTACTCAATATGTGTACAAGAC 197
BSNT_05468___ 338 GTAAGGCTG-ATATTCATCTGCCGAGATCTGTA-----AACGACCAGTAT 381
.|.||| || || ||.||.|||| || ||| |.||||||||||
BPUM_3255___y 198 ATCAGG-TGCAT-TTGATTTGCC----TC-GTAAGGTGATCGACCAGTAT 240
BSNT_05468___ 382 AAAATCGG--AACAGCTGTAAAGCCGGA-AAACCTGAAGCCGGGTG---- 424
.|.||.|| ||.||.|.|.|.| ||| |||.|..|| ||.||||
BPUM_3255___y 241 CAGATTGGGAAAAAGATATCATG--GGACAAAGCCCAA-CCCGGTGACCT 287
BSNT_05468___ 425 ---ATATTTT----GTTTTTCAAGAAAGAGGGAAGCAACGGCTCTGTTCC 467
||||||| |.|| |||| |||.|||..| .|.|.||
BPUM_3255___y 288 CGTATATTTTCGCAGCTT----AGAA-----GAAACAAAAG--ATATCCC 326
BSNT_05468___ 468 GACACATGACGCCCTTTATATCGGAGACGGCCAAATGGTACACAGTACAC 517
||||||||..||..|.||....||..|||..||..|..|.||||..||||
BPUM_3255___y 327 GACACATGTGGCGTTGTACGCTGGTAACGATCAGGTCATTCACATCACAC 376
BSNT_05468___ 518 --AGTCAAAAGGGGTTATCATCACCAATTACAAA-----------AAAAG 554
|||| ||||.||..|.| ||| |||||
BPUM_3255___y 377 TTAGTC--AAGGTGTGGTGA-----------AAACGGACGTGAGCAAAAG 413
BSNT_05468___ 555 CAGCTATTGGAGCGGAAC--TTATATCGGAGCGAGACGAATCGCTGCCGA 602
.|..||||||| ||||.| ||.||| |.||..|.||||.|..|.|.|..
BPUM_3255___y 414 TAAATATTGGA-CGGACCGGTTTTAT-GCAGTCAAACGACTTCCAGGCAC 461
BSNT_05468___ 603 TCCGGCAACGGCTGATGTTCCTGTCGTTCAGGAGGCCGA-AAAATATATC 651
.||||.||...|.|||..||.|.|.||..|.||.| ||| .||||||.|.
BPUM_3255___y 462 ACCGGAAATCTCGGATCATCGTCTAGTGAAAGATG-CGATGAAATATTTA 510
BSNT_05468___ 652 GGTGTCCCATATGTGTTTGGCGGAAGCACGCCGTCAGA-GGGCTTTGATT 700
|||.|.||.|||||.||||| .|.||||..||.|.||| .||||||||||
BPUM_3255___y 511 GGTATTCCTTATGTATTTGG-TGCAGCAGACCCTAAGATTGGCTTTGATT 559
BSNT_05468___ 701 GCTCGGGGCTTGTGCAATATGTGTTTCAACAGGCACTCGGCATTTATCTG 750
|.||.||..||.|.||||||||.|||.||.|..||||.||.||||||.|.
BPUM_3255___y 560 GTTCAGGCTTTTTACAATATGTATTTGAAAAATCACTAGGGATTTATTTA 609
BSNT_05468___ 751 CCGCGATCAGCCGAACAGCAGTGGGCAGTGGGCGAGAAGATAGCCCCTCA 800
||.|||...||.||||||||||||...||.||.||.||..|.| |.|.|
BPUM_3255___y 610 CCTCGAAGTGCTGAACAGCAGTGGATGGTTGGAGAAAAAGTGG--CATTA 657
BSNT_05468___ 801 GA--ACATAAAGCCTGGTGATGTCGTCTATTTCAGCAATACGTATAAAAC 848
|| |.|||...|||||.|||.|.||||.|||.|||||.||.||.||..|
BPUM_3255___y 658 GATGATATACGTCCTGGGGATTTTGTCTTTTTTAGCAACACATACAAGCC 707
BSNT_05468___ 849 GGGAATTTCACATGCAGGCATTTATGCGGGCGCAGGCAGGTTCATCCAGG 898
.||.|||||.||||.|||.||.|||...||||..|...|.||.||.||.|
BPUM_3255___y 708 AGGCATTTCTCATGTAGGGATGTATATTGGCGGTGATCGTTTTATTCATG 757
BSNT_05468___ 899 CGAGCAGGTCAGAAAAAGTAACCATTTCCTATTTGTCAGAGGAT--TACT 946
|||||.|.||.||||..|||||..||||.||||||||.|| || ||.|
BPUM_3255___y 758 CGAGCCGTTCGGAAAGTGTAACGGTTTCTTATTTGTCTGA--ATCGTATT 805
BSNT_05468___ 947 GGAAATCG---AAGAT-GACGGGTATTCGC----CGATTTGACA-ACCTG 987
|| || ||.|| |||.||| || ||| ||.||| |.|||
BPUM_3255___y 806 GG----CGCGAAAAATGGACAGGT----GCGAAACGA-TTAACAGAGCTG 846
BSNT_05468___ 988 ACAATCCCGAAAGAAAATCCGATTGTTTCCGAAGCGACGCT--TTATGTC 1035
|.|.|..|.|||||||||||||||||.||..|||| |||| .|||.|.
BPUM_3255___y 847 AAATTAGCAAAAGAAAATCCGATTGTCTCAAAAGC--CGCTACGTATATT 894
BSNT_05468___ 1036 GGAGAAGTGCCTTA---CAAACAGGGCGGAGTAACACCTGAGACAGGATT 1082
||.|||||.||||| ||| |||..|||..|| .||..||..|||.||
BPUM_3255___y 895 GGTGAAGTTCCTTATGTCAA--AGGTGGGACGAA-TCCAAAGCAAGGCTT 941
BSNT_05468___ 1083 TGATACAGCTGGATTTGTCCAATATGTATACCAGAAAGCAGC-CGGTATT 1131
|||.|||||.||.||....||.||.|||||.| ||.||..|| .||||||
BPUM_3255___y 942 TGACACAGCAGGGTTCACACAGTACGTATATC-GAGAGGTGCTTGGTATT 990
BSNT_05468___ 1132 TCCCTGCCTCGATACG--------CAA--CAAGCCA-GTACAATGCCGGA 1170
...||||||||.||.| ||| ||||.|| |||| .||.|
BPUM_3255___y 991 GAGCTGCCTCGCTATGCGTCAGGTCAAGTCAAGACAGGTAC---CCCTG- 1036
BSNT_05468___ 1171 ACTAAGATTAAGAAGGCGGACCTGAAGCCGGGAGACATTGTGTTCTTT-- 1218
|.|||..|.||||.||||||||||||||..||||.||||||
BPUM_3255___y 1037 -------TGAAGCGGTCGGAGCTGAAGCCGGGAGATCTTGTTTTCTTTAG 1079
BSNT_05468___ 1219 --CAA--TCAACAAGCTTAAATCCCTCCATCTAT-----ATCGGAAACGG 1259
.|| ||| ||.|..||..|.||.||| ||| ||||
BPUM_3255___y 1080 TGGAACGTCA------TTGATGCCGGCGATTTATGCAGGATC--AAAC-- 1119
BSNT_05468___ 1260 ACAAGTTGTTCATGTCACATTATCAAACGG---CGTGACCATCACCAATA 1306
||||||.|||||||.||..|.|||||.|| |||| .||||.||||
BPUM_3255___y 1120 -CAAGTTATTCATGTGACCGTCTCAAATGGTGTCGTG---CTCACGAATA 1165
BSNT_05468___ 1307 TGAACACGAGCACATATTGGAAGGATAAATACGCAG----------GAAG 1346
||||.||.||.||.||.|||||||||||.||.| || |||.
BPUM_3255___y 1166 TGAAAACAAGTACGTACTGGAAGGATAAGTATG-AGACGGCTGTTCGAAT 1214
BSNT_05468___ 1347 TATACGAGTGCAATAA 1362
||.| .|||||
BPUM_3255___y 1215 TAAA------AAATAA 1224
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