Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05468 and BPUM_3255

See Amino acid alignment / Visit BSNT_05468 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_05468___ywtD.1.24716.seq
#    -bsequence dna-align/BPUM_3255___ywtD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05468___ywtD-BPUM_3255___ywtD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05468___ywtD-BPUM_3255___ywtD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05468___ywtD
# 2: BPUM_3255___ywtD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1466
# Identity:     827/1466 (56.4%)
# Similarity:   827/1466 (56.4%)
# Gaps:         346/1466 (23.6%)
# Score: 2081.5
# 
#
#=======================================

BSNT_05468___      1 ATGAGACACTCTCTTTTTATTTGCCCAGCATATTCATTCTGTAAAAATAT     50
                                                                       
BPUM_3255___y      0 --------------------------------------------------      0

BSNT_05468___     51 CAAAAAGTCTCTTAACATATTCAAAAAAATACCGATGTTAAAACTGCAAA    100
                                                       |||    ||.||.|| 
BPUM_3255___y      1 ----------------------------------ATG----AAATGGAA-     11

BSNT_05468___    101 AAGAGGAGGAGATAATAAAAGTGAACACACTGGCAAACTGGAAGAAGTTT    150
                           |||       ||.||||     |.|||     |||     ||.|
BPUM_3255___y     12 ------AGG-------AATAGTG-----ATTGG-----TGG-----GTGT     33

BSNT_05468___    151 TTGCTTGTGGCGGTTATCATTTGTTTTTTGGTTCCAATTATGACAAAAGC    200
                     ..|||.||.|.|.|.|     ||||..|  ||..||||     ||.||||
BPUM_3255___y     34 GCGCTCGTAGGGCTGA-----TGTTCAT--GTCTCAAT-----CAGAAGC     71

BSNT_05468___    201 GGAGATTGCGGAAGCTGATACATCATCAGAATTGATTGTCAGCGAAGCAA    250
                       ||.||       ||.|.|||.||||     |..||..||.| ||||..
BPUM_3255___y     72 --AGCTT-------CTCAAACAGCATC-----TCCTTTGCAAC-AAGCGG    106

BSNT_05468___    251 AAAACCTGCTTGGA------TATCAGTATAAATATGGCGG-GGAAACG--    291
                     ||||..||.|||||      ||||   |||||      || ||||.||  
BPUM_3255___y    107 AAAAGTTGATTGGATCACCCTATC---ATAAA------GGAGGAACCGAT    147

BSNT_05468___    292 CCGAAAGAGGGTTTCGATCCATCAGGATTGATACAATATGTGTTCA----    337
                     ||.|||..|||.||.||..|||||||.||.|..||||||||||.||    
BPUM_3255___y    148 CCAAAAACGGGCTTTGACGCATCAGGGTTTACTCAATATGTGTACAAGAC    197

BSNT_05468___    338 GTAAGGCTG-ATATTCATCTGCCGAGATCTGTA-----AACGACCAGTAT    381
                     .|.||| || || ||.||.||||    || |||     |.||||||||||
BPUM_3255___y    198 ATCAGG-TGCAT-TTGATTTGCC----TC-GTAAGGTGATCGACCAGTAT    240

BSNT_05468___    382 AAAATCGG--AACAGCTGTAAAGCCGGA-AAACCTGAAGCCGGGTG----    424
                     .|.||.||  ||.||.|.|.|.|  ||| |||.|..|| ||.||||    
BPUM_3255___y    241 CAGATTGGGAAAAAGATATCATG--GGACAAAGCCCAA-CCCGGTGACCT    287

BSNT_05468___    425 ---ATATTTT----GTTTTTCAAGAAAGAGGGAAGCAACGGCTCTGTTCC    467
                        |||||||    |.||    ||||     |||.|||..|  .|.|.||
BPUM_3255___y    288 CGTATATTTTCGCAGCTT----AGAA-----GAAACAAAAG--ATATCCC    326

BSNT_05468___    468 GACACATGACGCCCTTTATATCGGAGACGGCCAAATGGTACACAGTACAC    517
                     ||||||||..||..|.||....||..|||..||..|..|.||||..||||
BPUM_3255___y    327 GACACATGTGGCGTTGTACGCTGGTAACGATCAGGTCATTCACATCACAC    376

BSNT_05468___    518 --AGTCAAAAGGGGTTATCATCACCAATTACAAA-----------AAAAG    554
                       ||||  ||||.||..|.|           |||           |||||
BPUM_3255___y    377 TTAGTC--AAGGTGTGGTGA-----------AAACGGACGTGAGCAAAAG    413

BSNT_05468___    555 CAGCTATTGGAGCGGAAC--TTATATCGGAGCGAGACGAATCGCTGCCGA    602
                     .|..||||||| ||||.|  ||.||| |.||..|.||||.|..|.|.|..
BPUM_3255___y    414 TAAATATTGGA-CGGACCGGTTTTAT-GCAGTCAAACGACTTCCAGGCAC    461

BSNT_05468___    603 TCCGGCAACGGCTGATGTTCCTGTCGTTCAGGAGGCCGA-AAAATATATC    651
                     .||||.||...|.|||..||.|.|.||..|.||.| ||| .||||||.|.
BPUM_3255___y    462 ACCGGAAATCTCGGATCATCGTCTAGTGAAAGATG-CGATGAAATATTTA    510

BSNT_05468___    652 GGTGTCCCATATGTGTTTGGCGGAAGCACGCCGTCAGA-GGGCTTTGATT    700
                     |||.|.||.|||||.||||| .|.||||..||.|.||| .||||||||||
BPUM_3255___y    511 GGTATTCCTTATGTATTTGG-TGCAGCAGACCCTAAGATTGGCTTTGATT    559

BSNT_05468___    701 GCTCGGGGCTTGTGCAATATGTGTTTCAACAGGCACTCGGCATTTATCTG    750
                     |.||.||..||.|.||||||||.|||.||.|..||||.||.||||||.|.
BPUM_3255___y    560 GTTCAGGCTTTTTACAATATGTATTTGAAAAATCACTAGGGATTTATTTA    609

BSNT_05468___    751 CCGCGATCAGCCGAACAGCAGTGGGCAGTGGGCGAGAAGATAGCCCCTCA    800
                     ||.|||...||.||||||||||||...||.||.||.||..|.|  |.|.|
BPUM_3255___y    610 CCTCGAAGTGCTGAACAGCAGTGGATGGTTGGAGAAAAAGTGG--CATTA    657

BSNT_05468___    801 GA--ACATAAAGCCTGGTGATGTCGTCTATTTCAGCAATACGTATAAAAC    848
                     ||  |.|||...|||||.|||.|.||||.|||.|||||.||.||.||..|
BPUM_3255___y    658 GATGATATACGTCCTGGGGATTTTGTCTTTTTTAGCAACACATACAAGCC    707

BSNT_05468___    849 GGGAATTTCACATGCAGGCATTTATGCGGGCGCAGGCAGGTTCATCCAGG    898
                     .||.|||||.||||.|||.||.|||...||||..|...|.||.||.||.|
BPUM_3255___y    708 AGGCATTTCTCATGTAGGGATGTATATTGGCGGTGATCGTTTTATTCATG    757

BSNT_05468___    899 CGAGCAGGTCAGAAAAAGTAACCATTTCCTATTTGTCAGAGGAT--TACT    946
                     |||||.|.||.||||..|||||..||||.||||||||.||  ||  ||.|
BPUM_3255___y    758 CGAGCCGTTCGGAAAGTGTAACGGTTTCTTATTTGTCTGA--ATCGTATT    805

BSNT_05468___    947 GGAAATCG---AAGAT-GACGGGTATTCGC----CGATTTGACA-ACCTG    987
                     ||    ||   ||.|| |||.|||    ||    ||| ||.||| |.|||
BPUM_3255___y    806 GG----CGCGAAAAATGGACAGGT----GCGAAACGA-TTAACAGAGCTG    846

BSNT_05468___    988 ACAATCCCGAAAGAAAATCCGATTGTTTCCGAAGCGACGCT--TTATGTC   1035
                     |.|.|..|.|||||||||||||||||.||..||||  ||||  .|||.|.
BPUM_3255___y    847 AAATTAGCAAAAGAAAATCCGATTGTCTCAAAAGC--CGCTACGTATATT    894

BSNT_05468___   1036 GGAGAAGTGCCTTA---CAAACAGGGCGGAGTAACACCTGAGACAGGATT   1082
                     ||.|||||.|||||   |||  |||..|||..|| .||..||..|||.||
BPUM_3255___y    895 GGTGAAGTTCCTTATGTCAA--AGGTGGGACGAA-TCCAAAGCAAGGCTT    941

BSNT_05468___   1083 TGATACAGCTGGATTTGTCCAATATGTATACCAGAAAGCAGC-CGGTATT   1131
                     |||.|||||.||.||....||.||.|||||.| ||.||..|| .||||||
BPUM_3255___y    942 TGACACAGCAGGGTTCACACAGTACGTATATC-GAGAGGTGCTTGGTATT    990

BSNT_05468___   1132 TCCCTGCCTCGATACG--------CAA--CAAGCCA-GTACAATGCCGGA   1170
                     ...||||||||.||.|        |||  ||||.|| ||||   .||.| 
BPUM_3255___y    991 GAGCTGCCTCGCTATGCGTCAGGTCAAGTCAAGACAGGTAC---CCCTG-   1036

BSNT_05468___   1171 ACTAAGATTAAGAAGGCGGACCTGAAGCCGGGAGACATTGTGTTCTTT--   1218
                            |.|||..|.||||.||||||||||||||..||||.||||||  
BPUM_3255___y   1037 -------TGAAGCGGTCGGAGCTGAAGCCGGGAGATCTTGTTTTCTTTAG   1079

BSNT_05468___   1219 --CAA--TCAACAAGCTTAAATCCCTCCATCTAT-----ATCGGAAACGG   1259
                       .||  |||      ||.|..||..|.||.|||     |||  ||||  
BPUM_3255___y   1080 TGGAACGTCA------TTGATGCCGGCGATTTATGCAGGATC--AAAC--   1119

BSNT_05468___   1260 ACAAGTTGTTCATGTCACATTATCAAACGG---CGTGACCATCACCAATA   1306
                      ||||||.|||||||.||..|.|||||.||   ||||   .||||.||||
BPUM_3255___y   1120 -CAAGTTATTCATGTGACCGTCTCAAATGGTGTCGTG---CTCACGAATA   1165

BSNT_05468___   1307 TGAACACGAGCACATATTGGAAGGATAAATACGCAG----------GAAG   1346
                     ||||.||.||.||.||.|||||||||||.||.| ||          |||.
BPUM_3255___y   1166 TGAAAACAAGTACGTACTGGAAGGATAAGTATG-AGACGGCTGTTCGAAT   1214

BSNT_05468___   1347 TATACGAGTGCAATAA   1362
                     ||.|      .|||||
BPUM_3255___y   1215 TAAA------AAATAA   1224


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