Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05466 and BPUM_3254

See Amino acid alignment / Visit BSNT_05466 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_05466___ywtE.1.24716.seq
#    -bsequence dna-align/BPUM_3254___ywtE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05466___ywtE-BPUM_3254___ywtE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05466___ywtE-BPUM_3254___ywtE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05466___ywtE
# 2: BPUM_3254___ywtE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 968
# Identity:     605/968 (62.5%)
# Similarity:   605/968 (62.5%)
# Gaps:         172/968 (17.8%)
# Score: 1822.5
# 
#
#=======================================

BSNT_05466___      1 ---------------------ATG----AAATGTATTGCGATTGATCTAG     25
                                          |||    ||||| ||||||||||||.|||
BPUM_3254___y      1 ATGAAGGAGGATTTGACAGCGATGAAAAAAATG-ATTGCGATTGATTTAG     49

BSNT_05466___     26 ACGGAACATTACTGAATAAAGAAAGCGTCATTTCTGCGGAAAACAGAGAG     75
                     ||||.|||.|..|.||||.|.||||.|..||.|||||..|||||||.|.|
BPUM_3254___y     50 ACGGTACACTTTTAAATACAAAAAGTGAAATATCTGCTCAAAACAGGGCG     99

BSNT_05466___     76 GC---GATC----------AAGCGGGCCGTTGATGCCGGCATCCTCGTCA    112
                     ||   ||||          ||||||      |||      || .|.||||
BPUM_3254___y    100 GCATTGATCCGCGCGAAGGAAGCGG------GAT------AT-ATTGTCA    136

BSNT_05466___    113 CCATTTGCACGGGAAGAGCGACATTTGATGTAAAGGCGCTGCTGGATGAC    162
                     ||||.||.||.||..|.|||||.||||||||.||||..|||||.|.|||.
BPUM_3254___y    137 CCATCTGTACAGGGCGGGCGACTTTTGATGTGAAGGAACTGCTTGGTGAT    186

BSNT_05466___    163 TTGGACATCCCTATCATTGCAGCTAATGGCGGTACGATCCATGACACG--    210
                     |||||||||||.||.||||||||.||.|||||.||..|.||| ||| |  
BPUM_3254___y    187 TTGGACATCCCCATTATTGCAGCAAACGGCGGAACCGTTCAT-ACA-GAA    234

BSNT_05466___    211 GGTTACCGTTTGA-----TAAGCCGGA-CATTAATGGATCAGGAAGCCGG    254
                     |||||     |||     |.|||||.| || .|.|.||.||.|||||.||
BPUM_3254___y    235 GGTTA-----TGAACTTTTCAGCCGTATCA-CACTTGACCAAGAAGCAGG    278

BSNT_05466___    255 CAA---AGCGATTGCTGATTACTTACTGTCAAAAAACATTTACTTTGAGG    301
                     .||   ||||   |||.|....|||.|...||.|||||||||||||||||
BPUM_3254___y    279 AAAACGAGCG---GCTAAAGCATTAGTAGAAAGAAACATTTACTTTGAGG    325

BSNT_05466___    302 TATATACAGATGACCAT---CTGCTTTCTCCTTTTGACGGCAAAGCTAAG    348
                     |.||.||   ||||.||   ||.||.|||||||||||.||.||||..||.
BPUM_3254___y    326 TTTACAC---TGACGATGCGCTCCTCTCTCCTTTTGATGGAAAAGAGAAA    372

BSNT_05466___    349 CTGCACGCGGAGCTAGACATTCTAAAGAGCGCAAATCCAAACGAGCAGAC    398
                     |||.|.||.||..|.||..|..|.||.|||||.||||||||.||..|.|.
BPUM_3254___y    373 CTGAAAGCAGAATTTGATGTGATCAAAAGCGCGAATCCAAATGAAGATAT    422

BSNT_05466___    399 AGATGAACTGTGGCAAGGAGCCATGACTCAATTCAAGCAATTTGGAATTA    448
                     ||.|||..|.|||.||||.||.|||||||||||.||.||||||||.||.|
BPUM_3254___y    423 AGCTGATTTATGGGAAGGGGCAATGACTCAATTTAAACAATTTGGCATCA    472

BSNT_05466___    449 AACCAATCCCTCATAT-----CGAATCTGTTTTTGAGGGCG-GTGAAAAT    492
                     |||||.|...|.||||     .||     ||||||| |.|| .||||...
BPUM_3254___y    473 AACCAGTGGATGATATTCGCCAGA-----TTTTTGA-GTCGAATGAAGCG    516

BSNT_05466___    493 ATTTATAAGCTTCTATGCTTCTCCTTTGATATGGACAAGCT----GAAAC    538
                     |..|||||..|.||.||||||||.|||||||||.|.||..|    |||.|
BPUM_3254___y    517 ACCTATAAATTACTCTGCTTCTCATTTGATATGAATAAATTACAGGAAGC    566

BSNT_05466___    539 AAGCGA---------AGGAA-----GAGCTGAAGCATCATAAAAAACTGG    574
                     |.|.||         ||.||     |||||     .||||       || 
BPUM_3254___y    567 ACGAGATCTCCTCTCAGAAATGCCTGAGCT-----TTCAT-------TG-    603

BSNT_05466___    575 CGCAAACCTCTTCCGGAAAACATATTATTGAAATCCTGCC------GGCC    618
                          ||||||||.|||||||||||.|||||..|.||.||      |   
BPUM_3254___y    604 -----ACCTCTTCTGGAAAACATATCATTGAGGTACTTCCAAAAGAG---    645

BSNT_05466___    619 TCTTCAGGAAAAGGACGCGCGTTAACAAAGCTGGCTG-ACATATACGGAA    667
                        ||.||.|||||||..||..|.|.|||.||.||.| .||| ||.||..
BPUM_3254___y    646 ---TCTGGGAAAGGACATGCCCTGAAAAAACTCGCAGCTCAT-TATGGCG    691

BSNT_05466___    668 TTGA---AACACAGGATATCTATGCGATCGGCGACAGTCCGAACGATTTG    714
                     |.||   ..|||   ||||.|||||.||.||||||||.||.||||||.|.
BPUM_3254___y    692 TAGACCGCTCAC---ATATTTATGCAATAGGCGACAGCCCCAACGATCTA    738

BSNT_05466___    715 TCCATGTTTGAAGTCTCAGGACACCGTATCGCCATGGAAAATGCGATTGA    764
                     |||||||||||.|...||||.|||||.||.||.||||..|||||..|.||
BPUM_3254___y    739 TCCATGTTTGAGGAAGCAGGCCACCGCATTGCTATGGGGAATGCAGTCGA    788

BSNT_05466___    765 TG-AATTAAAAGAAAAAAGCACCTTTGTCACAAAAAGCAATGACGAAAAT    813
                     || .||| ||||||||.|||||.|...|.||||||.|||||.|.|||.|.
BPUM_3254___y    789 TGTCATT-AAAGAAAAGAGCACTTACATGACAAAAGGCAATCATGAAGAC    837

BSNT_05466___    814 GGTGTGGCCTACTTTATAGACCAGCTTCTTTCAGGA--CAAT---ATGCA    858
                     |||||.||.||||||||.||.|.|||  |||.|..|  ||||   |.|.|
BPUM_3254___y    838 GGTGTTGCTTACTTTATTGATCTGCT--TTTAAAAAATCAATTCCACGAA    885

BSNT_05466___    859 TAA---------------    861
                     .||               
BPUM_3254___y    886 AAAAAGACGCTTGTCTGA    903


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