Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05466 and BPUM_3254
See
Amino acid alignment /
Visit
BSNT_05466 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_05466___ywtE.1.24716.seq
# -bsequence dna-align/BPUM_3254___ywtE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05466___ywtE-BPUM_3254___ywtE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05466___ywtE-BPUM_3254___ywtE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05466___ywtE
# 2: BPUM_3254___ywtE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 968
# Identity: 605/968 (62.5%)
# Similarity: 605/968 (62.5%)
# Gaps: 172/968 (17.8%)
# Score: 1822.5
#
#
#=======================================
BSNT_05466___ 1 ---------------------ATG----AAATGTATTGCGATTGATCTAG 25
||| ||||| ||||||||||||.|||
BPUM_3254___y 1 ATGAAGGAGGATTTGACAGCGATGAAAAAAATG-ATTGCGATTGATTTAG 49
BSNT_05466___ 26 ACGGAACATTACTGAATAAAGAAAGCGTCATTTCTGCGGAAAACAGAGAG 75
||||.|||.|..|.||||.|.||||.|..||.|||||..|||||||.|.|
BPUM_3254___y 50 ACGGTACACTTTTAAATACAAAAAGTGAAATATCTGCTCAAAACAGGGCG 99
BSNT_05466___ 76 GC---GATC----------AAGCGGGCCGTTGATGCCGGCATCCTCGTCA 112
|| |||| |||||| ||| || .|.||||
BPUM_3254___y 100 GCATTGATCCGCGCGAAGGAAGCGG------GAT------AT-ATTGTCA 136
BSNT_05466___ 113 CCATTTGCACGGGAAGAGCGACATTTGATGTAAAGGCGCTGCTGGATGAC 162
||||.||.||.||..|.|||||.||||||||.||||..|||||.|.|||.
BPUM_3254___y 137 CCATCTGTACAGGGCGGGCGACTTTTGATGTGAAGGAACTGCTTGGTGAT 186
BSNT_05466___ 163 TTGGACATCCCTATCATTGCAGCTAATGGCGGTACGATCCATGACACG-- 210
|||||||||||.||.||||||||.||.|||||.||..|.||| ||| |
BPUM_3254___y 187 TTGGACATCCCCATTATTGCAGCAAACGGCGGAACCGTTCAT-ACA-GAA 234
BSNT_05466___ 211 GGTTACCGTTTGA-----TAAGCCGGA-CATTAATGGATCAGGAAGCCGG 254
||||| ||| |.|||||.| || .|.|.||.||.|||||.||
BPUM_3254___y 235 GGTTA-----TGAACTTTTCAGCCGTATCA-CACTTGACCAAGAAGCAGG 278
BSNT_05466___ 255 CAA---AGCGATTGCTGATTACTTACTGTCAAAAAACATTTACTTTGAGG 301
.|| |||| |||.|....|||.|...||.|||||||||||||||||
BPUM_3254___y 279 AAAACGAGCG---GCTAAAGCATTAGTAGAAAGAAACATTTACTTTGAGG 325
BSNT_05466___ 302 TATATACAGATGACCAT---CTGCTTTCTCCTTTTGACGGCAAAGCTAAG 348
|.||.|| ||||.|| ||.||.|||||||||||.||.||||..||.
BPUM_3254___y 326 TTTACAC---TGACGATGCGCTCCTCTCTCCTTTTGATGGAAAAGAGAAA 372
BSNT_05466___ 349 CTGCACGCGGAGCTAGACATTCTAAAGAGCGCAAATCCAAACGAGCAGAC 398
|||.|.||.||..|.||..|..|.||.|||||.||||||||.||..|.|.
BPUM_3254___y 373 CTGAAAGCAGAATTTGATGTGATCAAAAGCGCGAATCCAAATGAAGATAT 422
BSNT_05466___ 399 AGATGAACTGTGGCAAGGAGCCATGACTCAATTCAAGCAATTTGGAATTA 448
||.|||..|.|||.||||.||.|||||||||||.||.||||||||.||.|
BPUM_3254___y 423 AGCTGATTTATGGGAAGGGGCAATGACTCAATTTAAACAATTTGGCATCA 472
BSNT_05466___ 449 AACCAATCCCTCATAT-----CGAATCTGTTTTTGAGGGCG-GTGAAAAT 492
|||||.|...|.|||| .|| ||||||| |.|| .||||...
BPUM_3254___y 473 AACCAGTGGATGATATTCGCCAGA-----TTTTTGA-GTCGAATGAAGCG 516
BSNT_05466___ 493 ATTTATAAGCTTCTATGCTTCTCCTTTGATATGGACAAGCT----GAAAC 538
|..|||||..|.||.||||||||.|||||||||.|.||..| |||.|
BPUM_3254___y 517 ACCTATAAATTACTCTGCTTCTCATTTGATATGAATAAATTACAGGAAGC 566
BSNT_05466___ 539 AAGCGA---------AGGAA-----GAGCTGAAGCATCATAAAAAACTGG 574
|.|.|| ||.|| ||||| .|||| ||
BPUM_3254___y 567 ACGAGATCTCCTCTCAGAAATGCCTGAGCT-----TTCAT-------TG- 603
BSNT_05466___ 575 CGCAAACCTCTTCCGGAAAACATATTATTGAAATCCTGCC------GGCC 618
||||||||.|||||||||||.|||||..|.||.|| |
BPUM_3254___y 604 -----ACCTCTTCTGGAAAACATATCATTGAGGTACTTCCAAAAGAG--- 645
BSNT_05466___ 619 TCTTCAGGAAAAGGACGCGCGTTAACAAAGCTGGCTG-ACATATACGGAA 667
||.||.|||||||..||..|.|.|||.||.||.| .||| ||.||..
BPUM_3254___y 646 ---TCTGGGAAAGGACATGCCCTGAAAAAACTCGCAGCTCAT-TATGGCG 691
BSNT_05466___ 668 TTGA---AACACAGGATATCTATGCGATCGGCGACAGTCCGAACGATTTG 714
|.|| ..||| ||||.|||||.||.||||||||.||.||||||.|.
BPUM_3254___y 692 TAGACCGCTCAC---ATATTTATGCAATAGGCGACAGCCCCAACGATCTA 738
BSNT_05466___ 715 TCCATGTTTGAAGTCTCAGGACACCGTATCGCCATGGAAAATGCGATTGA 764
|||||||||||.|...||||.|||||.||.||.||||..|||||..|.||
BPUM_3254___y 739 TCCATGTTTGAGGAAGCAGGCCACCGCATTGCTATGGGGAATGCAGTCGA 788
BSNT_05466___ 765 TG-AATTAAAAGAAAAAAGCACCTTTGTCACAAAAAGCAATGACGAAAAT 813
|| .||| ||||||||.|||||.|...|.||||||.|||||.|.|||.|.
BPUM_3254___y 789 TGTCATT-AAAGAAAAGAGCACTTACATGACAAAAGGCAATCATGAAGAC 837
BSNT_05466___ 814 GGTGTGGCCTACTTTATAGACCAGCTTCTTTCAGGA--CAAT---ATGCA 858
|||||.||.||||||||.||.|.||| |||.|..| |||| |.|.|
BPUM_3254___y 838 GGTGTTGCTTACTTTATTGATCTGCT--TTTAAAAAATCAATTCCACGAA 885
BSNT_05466___ 859 TAA--------------- 861
.||
BPUM_3254___y 886 AAAAAGACGCTTGTCTGA 903
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.