Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05460 and BPUM_3249
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_05460___gerBB.1.24716.seq
# -bsequence dna-align/BPUM_3249___gerBB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05460___gerBB-BPUM_3249___gerBB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05460___gerBB-BPUM_3249___gerBB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05460___gerBB
# 2: BPUM_3249___gerBB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1236
# Identity: 708/1236 (57.3%)
# Similarity: 708/1236 (57.3%)
# Gaps: 264/1236 (21.4%)
# Score: 1700.5
#
#
#=======================================
BSNT_05460___ 1 ATGAGGCAAT---CAGAG--GACAAGCTTACATTTATGC-AGACGCTTAT 44
|| ||||| ||.|||||..||||..|.| ||.|.| .||
BPUM_3249___g 1 --------ATGTACAGAGCTGAGAAGCTATCATTGTTACAAGTCAC-CAT 41
BSNT_05460___ 45 TATGGTAAGCAGTACAATGATCGGTGCTGGCGTCTTAACCCTTTCCCGC- 93
|.||...|||..|||||||||.||.|||||..|.||||||.||.|.|||
BPUM_3249___g 42 TCTGTGCAGCTCTACAATGATAGGCGCTGGAATTTTAACCATTCCACGCA 91
BSNT_05460___ 94 --TCAGCCGCTGAAACCGACAGTCC--GATTGGATGGATCATGATCCTGC 139
||.||| ||..|...|.||| || |||.||||||||..|..|..
BPUM_3249___g 92 GTTCTGCC----AATTCAGGATTCCCTGA-TGGCTGGATCATTGTATTAA 136
BSNT_05460___ 140 TGCAGGGCGTTATTTTTATTATTTTTTCTCTGCTTTTT------------ 177
|.|||||.||.||.|| ...||||..||||||||
BPUM_3249___g 137 TACAGGGAGTCATCTT-----CGCTTTCGTTGCTTTTTTGTTGGGATGGA 181
BSNT_05460___ 178 TTGCCTTTTCTTCAACGAAACA---GCGGGAAAACGATTTTTGAGCTCAA 224
|||| |.|| |||.| ||.|| |.||.||||||||| ||||
BPUM_3249___g 182 TTGC-------TGAA--AAAAATGCGCCGG-ATACCATTTTTGAG-TCAA 220
BSNT_05460___ 225 CAGCATTGCAGCGGGAAAAGTGGTTGGT---TTCTTT---------TTGA 262
|| .||||||..|..||| .||||| ||.|
BPUM_3249___g 221 ----AT-------AGAAAAGGAGCCGGTGCCATCTTTGGCACGTTCTTCA 259
BSNT_05460___ 263 AT---GTATTTATT-TCCCTGTATTTTATCGGTATCGTATGTTTTCAGAC 308
|| .||.|.||| || |||||..|.||.|||||..|.||..|..|
BPUM_3249___g 260 ATTTAATACTGATTGTC----TATTTACTAGGCATCGTCGGCTTCGAAGC 305
BSNT_05460___ 309 ACGGATTTTAGGCGAGGTTGTCGGATTCTTTCTTTTAAAAAACACACCGA 358
.||..||.|.||.||.||.|||..|||.||.||..|..||...||.||.|
BPUM_3249___g 306 GCGTGTTCTCGGAGAAGTCGTCCAATTTTTCCTGCTGGAATCGACTCCCA 355
BSNT_05460___ 359 TGGCGGTTGTTGTGATCATTTTTCTGGCAGTTGCCATTTATCATGTGGCT 408
||||.||..|||||||.||||||||....||.||.||.||||||.||...
BPUM_3249___g 356 TGGCAGTGATTGTGATGATTTTTCTTCTCGTGGCGATCTATCATTTGAAA 405
BSNT_05460___ 409 GGGGGCGTATACCCCATTG-CAAA--GGT-ATATGCATATATCTTCCCTA 454
.|.||..|.|..||.||.| |||| ||| |.||.||||||| ||.|
BPUM_3249___g 406 AGTGGTATTTTTCCAATAGTCAAAATGGTGACATACATATAT----CCGA 451
BSNT_05460___ 455 TTACAATTATTATTTTT------CTCATGCTTTTGATGTTTAGCTTTCGT 498
|.||.||.|||||||.| ||||||| |||||| ||
BPUM_3249___g 452 TGACGATGATTATTTATATTGGGCTCATGC------TGTTTA------GT 489
BSNT_05460___ 499 TTG------TTTCAGTTAGATTTTATACGGCCCGTTTTTGAAGG----CG 538
||| ||..|.||.||||.|.|.||.|| |.|||.|| ||
BPUM_3249___g 490 TTGAAAATATTCGATTTTGATTATTTGCGTCC----TGTGATGGCGCACG 535
BSNT_05460___ 539 GCTTTCAAAGTTT-------TTTTTCTTTATTTCCTAAAACCCTTTTAT- 580
|.||||....||| ||.|||| ||.||||| |||||
BPUM_3249___g 536 GGTTTCGGGATTTTAGCAAGTTGTTCT-------CTCAAACC--TTTATT 576
BSNT_05460___ 581 -ATTTTTCTGGATTTGAAATTATTTTTTATCTCGTTCC----CTTTATGA 625
|.|||.||||.|||||..|.|||||.|.|.|.||.|| .||||| |
BPUM_3249___g 577 CAATTTACTGGCTTTGAGGTCATTTTGTTTGTTGTACCACTTATTTAT-A 625
BSNT_05460___ 626 AAGATCCAAAGCAGGTAAAAA----------AAGCTG---TCGCCTTTGG 662
|||| |||| .|||.|||| .||||| |||...||||
BPUM_3249___g 626 AAGA--CAAA--TGGTCAAAAGCGAAATGGGCAGCTGCGATCGGGGTTGG 671
BSNT_05460___ 663 TATTGTAACCTCAACTGTTTTCTACAGCATTACTTTGTTTATTGTCATTG 712
.||| ||.| ||.||.||||...|.|.||..|.|||.||||.||||
BPUM_3249___g 672 GATT---ACTT---CTCTTATCTATTCCCTCACGCTCTTTGTTGTGATTG 715
BSNT_05460___ 713 GCTGTATGAGTGTGGCTGAGGCAAAAACAGTGACGTGGCCGACGATTTCA 762
|.|..||||..||.|.|||..|.|||.|..|.||.||||||||..|.||.
BPUM_3249___g 716 GTTCCATGACAGTAGGTGAAACGAAATCCCTCACCTGGCCGACTGTATCC 765
BSNT_05460___ 763 CTCATTCATGCATTAGAAATCCCGGGCATTTTTATTGAACGGTTTGACCT 812
||||||||.|||.|||||.|....||..|.||.||||||||.|||||..|
BPUM_3249___g 766 CTCATTCAAGCACTAGAACTTGAAGGGGTCTTCATTGAACGATTTGATAT 815
BSNT_05460___ 813 GTTTTTACAGTTAACTTGGAC-AGCACAGCA----ATTTGCATGTATGCT 857
.|||||.|.|...|.|||||| .|| ||.|| |||||| |||||
BPUM_3249___g 816 ATTTTTGCTGACGATTTGGACGTGC-CAACAGTTTATTTGC----ATGCT 860
BSNT_05460___ 858 CGGCT------------CCTTTAAAGG-GGCGCATATCGGATTAACAGAT 894
.|||| ||.||||||| .|| ||| ||||
BPUM_3249___g 861 AGGCTTTTTCCAATTTGCCATTAAAGGTTGC-CAT---------ACAG-- 898
BSNT_05460___ 895 ATCTT-----CCACCTGAAAAATAAAAACAATCCT-TGGCTGCTTACTGC 938
|||| |.||| ||..|||..|.|.|.|| |||||| |||.
BPUM_3249___g 899 -TCTTTAAGACGACC---AATGTAACGAGACTGCTATGGCTG----CTGT 940
BSNT_05460___ 939 ATTGCTGGCTG-TTACATTTTTTCTATCAATGTTTCCTGA-AGATCTTAA 986
.|| || ||||.|.|...||.||..|.||||| || |.||.|.||
BPUM_3249___g 941 TTT------TGATTACCTCTGCCCTCTCTTTATTTCC-GAGAAATATCAA 983
BSNT_05460___ 987 TGCCGTGTTTTATTACGGTACACTTCTCGGATATATAT---------TTC 1027
||..||.|||||.|||..|||..|.|||||.|||..|| ||.
BPUM_3249___g 984 TGAAGTCTTTTACTACTCTACTTTACTCGGCTATGCATTGTTCGTCGTTT 1033
BSNT_05460___ 1028 TAGGC-ATCATTGTAATA---CCATTTTTCATCTGGTTTTTAAGCTG--G 1071
|||.| .||.||.||.|| |||||.| |||| |
BPUM_3249___g 1034 TAGCCGTTCCTTTTATTACAGCCATTCT---------------GCTGATG 1068
BSNT_05460___ 1072 ATACAGAAAAAACTGGGGAGGGGGCAGCTGCAATGA 1107
|||| |.|||||.||||||||..| |.|||| ||||
BPUM_3249___g 1069 ATAC-GCAAAAAATGGGGAGGTCG-ATCTGC-ATGA 1101
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