Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03297 and BPUM_3246

See Amino acid alignment / Visit BSNT_03297 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence dna-align/BSNT_03297___kduI.1.24716.seq
#    -bsequence dna-align/BPUM_3246___kduI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03297___kduI-BPUM_3246___kduI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03297___kduI-BPUM_3246___kduI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03297___kduI
# 2: BPUM_3246___kduI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 871
# Identity:     584/871 (67.0%)
# Similarity:   584/871 (67.0%)
# Gaps:          86/871 ( 9.9%)
# Score: 1788.0
# 
#
#=======================================

BSNT_03297___      1 ATGGAAAATCGTTATTCTGTACATCCTGAACAAGTAAAACGCTTTACAAC     50
                     |||||||||||||||.|||||||.|||||.||.||.|||||.||||||||
BPUM_3246___k      1 ATGGAAAATCGTTATGCTGTACACCCTGAGCAGGTCAAACGTTTTACAAC     50

BSNT_03297___     51 AGAGGAGCTTCGCAGTCATTTCTTAATGGATTCTT----TATT--TACAG     94
                     ||||||.|||||..||||||  ||.||  ||||.|    ||||  | |||
BPUM_3246___k     51 AGAGGAACTTCGTCGTCATT--TTCAT--ATTCCTACACTATTCGT-CAG     95

BSNT_03297___     95 ----AAAACAAACTTACGATGTATTACTCACATGAAGACCGGGTTGTCAT    140
                         .||..|||     |.|.||.||.||.|||||.|||||.||.||.||
BPUM_3246___k     96 TGGTGAATTAAA-----GCTCTACTATTCGCATGAGGACCGCGTGGTGAT    140

BSNT_03297___    141 CGGCGGAG------CGGCTCCAGGGCAAAGTGAACTGAAGCTTGATGCAG    184
                     .|||||||      ||.||.|||.||      ..||.||..|.|||||.|
BPUM_3246___k    141 TGGCGGAGTCATGCCGTCTGCAGAGC------CGCTCAAATTAGATGCTG    184

BSNT_03297___    185 GTGATTTTATAAAAACAGACTTCTTTTTGGAACGGCGTGAAATCGGGATT    234
                     |.||.|||.||..|||.||.|..||..|.|||.|.||.||.|||||.|||
BPUM_3246___k    185 GCGACTTTTTACGAACGGAATATTTCCTTGAAAGACGCGAGATCGGCATT    234

BSNT_03297___    235 ATTAATGTCGGCCAGCCTGGCGCTGTCAGGGTTGGCGATGATGAA---TA    281
                     .|.|||||||||...|..||..|.||||   .||.|||||.||||   |.
BPUM_3246___k    235 GTCAATGTCGGCGGTCAAGGAACGGTCA---CTGTCGATGGTGAAGCCTT    281

BSNT_03297___    282 TGTGCTTCA-AACAAAGGATTTTCTCTATATCGGAATGGGCAATCAGGAT    330
                     |||.||..| .||||| |||||..|.|||||.||..|.||..|..|.|||
BPUM_3246___k    282 TGTACTGGAGCACAAA-GATTTCTTATATATTGGGCTTGGACACGAAGAT    330

BSNT_03297___    331 GTATCGTTTCCAAGCCTGAA--CGGGGAAAAAGCGAAGTTTTA-CTTCGT    377
                     |||..||||.|.||  ||.|  |||.||..||||.|||||.|| ||| ||
BPUM_3246___k    331 GTACAGTTTGCTAG--TGCATCCGGCGAGGAAGCCAAGTTCTATCTT-GT    377

BSNT_03297___    378 CTCCGCTTGCGCCCA-CAAAAGC-TATCCGACACAAAAAGCCGCCCTAGC    425
                     .||.||....||.|| |  |||| |||||.||.||||||||.|||.|.||
BPUM_3246___k    378 ATCAGCCACGGCTCATC--AAGCGTATCCTACGCAAAAAGCAGCCATCGC    425

BSNT_03297___    426 TGAACTGACACCGGACCGCCTTGGTGATGATGCAGCGTCT------AATG    469
                     |||..|.||||||.|.|.|.|.||.||      |||||||      ||.|
BPUM_3246___k    426 TGAGTTAACACCGAATCACTTAGGGGA------AGCGTCTGCTTCCAACG    469

BSNT_03297___    470 TCAGAAGTCTGTACAAAGTTATTCA-TCAGGATGGCATTAAAAGCTGTCA    518
                     |..|||.|||.||..|||||||.|| .|| .|.|||||..||||||||||
BPUM_3246___k    470 TACGAAATCTATATCAAGTTATCCACGCA-AACGGCATCCAAAGCTGTCA    518

BSNT_03297___    519 GCTGATGATGGGAATAACGATGTTAGATCAA---------AACAACAACT    559
                     |||.|||||||||||.||         ||||         ||.||||..|
BPUM_3246___k    519 GCTTATGATGGGAATCAC---------TCAACTGGAAACCAATAACACAT    559

BSNT_03297___    560 GGAATACCATGCCAGCACACGTTCATGACCGTCGGATGGAGGCTTATCTT    609
                     |||||||.|||||.||.||..|||||||.||.||.|||||.|..|| |||
BPUM_3246___k    560 GGAATACGATGCCTGCTCATATTCATGATCGGCGTATGGAAGTGTA-CTT    608

BSNT_03297___    610 -TATCTGGATCTTGAAAAGGATTCAAAGGTATTTCATTTCATGGGCCAGC    658
                      |||||.|||.|.|||.|.|||.|....||.||||||||.|||||..|||
BPUM_3246___k    609 ATATCTTGATATCGAAGAAGATGCTCGTGTCTTTCATTTTATGGGGGAGC    658

BSNT_03297___    659 CGGACGAAACACGCCATCTTGTTGTTGG-AAATGAGCAGGCTGTCCTTTC    707
                     |....||||||.|.|||||.||| |||| .|||||..|.||.|||.||||
BPUM_3246___k    659 CATCTGAAACAAGACATCTCGTT-TTGGCTAATGAAGAAGCGGTCATTTC    707

BSNT_03297___    708 TCCCGCTTGGTCTATTCATTCTGGCGCAGGAACATCAAACTATAGCTTTG    757
                     |||.||||||||.||||||||.|||.|.||.|||.|.||.|||...|||.
BPUM_3246___k    708 TCCTGCTTGGTCCATTCATTCAGGCTCGGGCACAGCGAATTATTCATTTA    757

BSNT_03297___    758 TGTGGGCGATGGCTGGAGAAAATTACACATTTACGGACATGGATCTCATT    807
                     |.||||||||||||||.||.||.||.||.||||..||.|||||..|..|.
BPUM_3246___k    758 TTTGGGCGATGGCTGGCGAGAACTATACGTTTAAAGATATGGACTTTGTC    807

BSNT_03297___    808 CCGATGGATGGGCTGAAATAA    828
                     ||.|||||...|||||..|||
BPUM_3246___k    808 CCAATGGACCAGCTGAGGTAA    828


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03297 and BPUM_3246

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
