Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03294 and BPUM_3244
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_03294___kdgK.1.24716.seq
# -bsequence dna-align/BPUM_3244___kdgK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03294___kdgK-BPUM_3244___kdgK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03294___kdgK-BPUM_3244___kdgK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03294___kdgK
# 2: BPUM_3244___kdgK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity: 675/1116 (60.5%)
# Similarity: 675/1116 (60.5%)
# Gaps: 240/1116 (21.5%)
# Score: 1950.0
#
#
#=======================================
BSNT_03294___ 1 ATG-AAGC--TTGATGCGGTGACATTCGGGGAATCAATGGCCATGTTTTA 47
.|| |||| |.|||||.||.|||||.||||||||||||||.||||||||
BPUM_3244___k 1 GTGAAAGCATTGGATGCAGTCACATTTGGGGAATCAATGGCGATGTTTTA 50
BSNT_03294___ 48 CGCAAATGAGTATGGAGGCCTTCATGAAGT--ATCCACTTTTTCTAAAGG 95
||||||.||....||||..||||||.|||| ||.|| ||||.|||||
BPUM_3244___k 51 CGCAAAAGAAGCCGGAGAGCTTCATCAAGTGCATACA---TTTCAAAAGG 97
BSNT_03294___ 96 -GCTTGCCGGAGCAGAAAGCAATGTCGCCTGCGGCCTTGCCAGACTCGGA 144
||||||.||.||.|||||.||.||.||...|||..|.||.||.||.||
BPUM_3244___k 98 CGCTTGCTGGTGCTGAAAGTAACGTGGCAGTCGGTTTGGCGAGGCTAGG- 146
BSNT_03294___ 145 TTCCGA-ATGGGATGGATGAGCAAGGTCG--GCAATGA-TCAGCTCGGAA 190
||..|| .||||||||||||||||.|||| ||| || ||| ||.||.|
BPUM_3244___k 147 TTTTGATGTGGGATGGATGAGCAAAGTCGGAGCA--GATTCA-CTTGGCA 193
BSNT_03294___ 191 CGTTTATTTTACAAGAGCTTAAAAAAGAGGGAGTGGAT----GTGTCCCG 236
|.|||||||||.||||||||.|||||||.|||||.||| ||| .
BPUM_3244___k 194 CATTTATTTTAGAAGAGCTTCAAAAAGAAGGAGTCGATACAAGTG----C 239
BSNT_03294___ 237 TGTGATCCGCTCGCA-----GGACGAAAATCCCACCGGGCTGCTGCTTAA 281
.||||||||.||..| ||.|.||| ||.|||.|..|.|||||
BPUM_3244___k 240 AGTGATCCGTTCAAATGATGGGGCCAAA-----ACAGGGATCTTACTTAA 284
BSNT_03294___ 282 GTCAAAAGTGAAAGAAGGCGACCCGCAAGTTACCTACTATAGGAAAAACT 331
.||.|||||||..||.||.||.||..|.|||||.||.|||.|.|||...|
BPUM_3244___k 285 ATCCAAAGTGATGGATGGAGATCCTGACGTTACGTATTATCGCAAAGGTT 334
BSNT_03294___ 332 CAGCTGCAAGCACATTAACTTCTGCTGAATATCC-GAGAGATTATTTTCA 380
|.|||||.|||||..|.|.|.|...|||.|.||| |.| ||||||||.||
BPUM_3244___k 335 CTGCTGCGAGCACCATGAGTCCAAGTGACTTTCCTGCG-GATTATTTCCA 383
BSNT_03294___ 381 ATGCGCAGGCCATTTGCATGTGACAGGCATTCCGCCTGCCTTAT-CAGCC 429
|...|||||.|||.|.|||.|||||||.|||||||||||.|||| ||| .
BPUM_3244___k 384 ACAGGCAGGGCATCTCCATATGACAGGTATTCCGCCTGCATTATCCAG-T 432
BSNT_03294___ 430 GAGATGAAAGACTTCACGTACCATG----TCATGAACGACATGAGAAACG 475
||.||||.||..||..|.|..|||| ||| || |.||||.|.|.|
BPUM_3244___k 433 GAAATGAGAGCGTTTTCTTTTCATGCTCTTCA-GA---AGATGAAAGAAG 478
BSNT_03294___ 476 CAGGGAAAACCATTTCATTCGACCCTAATGTAAGACCTTC-------GCT 518
||||.||||||||||||||.||.|| |.|||||| |||
BPUM_3244___k 479 CAGGCAAAACCATTTCATTTGATCC-------AAACCTTCGGCTGCAGCT 521
BSNT_03294___ 519 TTGGCCTGATCA--AGCAACA-ATGGTACACAC----AATCAACGATCTG 561
.||| ||..| ||.||.| |||.|.||.|| |||||| |||
BPUM_3244___k 522 ATGG---GAAGAGGAGGAAGATATGATCCATACAGTGAATCAA--ATC-- 564
BSNT_03294___ 562 GCTGGGCTT-----GCAGACTGGTTTTTCCCGGGTATCGCAGAGGGAGA- 605
|||| |..||.||||||||.|||||..|.|||||.|||.|
BPUM_3244___k 565 -----GCTTATCAAGTGGATTGGTTTTTTCCGGGGCTTGCAGAAGGACAA 609
BSNT_03294___ 606 --GCT-----ATTGACCGGAGAAAAAACACCTGAAGGCATTGCCGACTAT 648
||| ..||.|..||| ||.||||..|||||.||...|
BPUM_3244___k 610 AGGCTCACAGGCTGTCATGAG--------CCGGAAGAGATTGCAGATGTT 651
BSNT_03294___ 649 TATTTGAAAAAAGGTG-CCAGCTTTGTCGCTATTAAACTCGGAAAAGAAG 697
|||||..|||||||.| |.||| ||||.|..|||||.|||||...|||||
BPUM_3244___k 652 TATTTACAAAAAGGCGTCAAGC-TTGTGGTCATTAAGCTCGGTGCAGAAG 700
BSNT_03294___ 698 GCGCTTACTTTAAAACGGGGACAAGTGAA----------GGATTTCTAGA 737
|.||.||.|.||| |||||.| ||||
BPUM_3244___k 701 GTGCCTATTATAA---------AAGTGCAGCCAATCAGGGGAT------- 734
BSNT_03294___ 738 AGGCTGCCGGGTCGACCGG----------------GTGGTTGATACGGTC 771
||| ||.||| ||.||.|||||.|||
BPUM_3244___k 735 ---------GGT-GAGCGGCTTTTATGTGCCCAATGTCGTGGATACAGTC 774
BSNT_03294___ 772 GGCGCCGGAGACGGATTTGCAGTCGGTGTAATCAGCGGTGTCCTAGACGG 821
||.|||||.||.||||||||.||.||.||.||||||||..|.||.|||||
BPUM_3244___k 775 GGTGCCGGTGATGGATTTGCCGTGGGGGTTATCAGCGGCTTACTGGACGG 824
BSNT_03294___ 822 TTTGTCGT---ACAAGGATGCGGTGCAAAGG---GGAAATGCGATTGGCG 865
|||.||.| |.|| || |.|| |||| ||.|||||..|.||.|
BPUM_3244___k 825 TTTATCATGTGAAAA--AT-CTGT---AAGGAGAGGCAATGCTGTAGGAG 868
BSNT_03294___ 866 CT-TTGCAAGTGCAGGCACCGGGGGATATGGACGGTTTGCCGAC-CAGGG 913
|| |||| .|||..|.|.||.||.||||.||||||..||||.|| |.||.
BPUM_3244___k 869 CTCTTGC-GGTGATGTCTCCAGGCGATAAGGACGGCCTGCCTACTCGGGA 917
BSNT_03294___ 914 AGAAATTAGCTTC--TTTTTTATCTGCTCAAAGAACGGTTCACCAAAAGA 961
|| |||||| |.||||| |.|||||| .|||||.||
BPUM_3244___k 918 AG-----AGCTTCAGTCTTTTA-----TAAAAGAA------GCCAAACGA 951
BSNT_03294___ 962 --------AAGGGGAT-TATTAA--------------------------- 975
|.|||.|| |||.||
BPUM_3244___k 952 TATCACAGACGGGAATATATGAAGGGGGATGAAGGATATGGGGAAGTCAG 1001
BSNT_03294___ 975 ---------------- 975
BPUM_3244___k 1002 CAAGTTTGAGCGTTAA 1017
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