Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03293 and BPUM_3243
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_03293___kdgA.1.24716.seq
# -bsequence dna-align/BPUM_3243___kdgA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03293___kdgA-BPUM_3243___kdgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03293___kdgA-BPUM_3243___kdgA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03293___kdgA
# 2: BPUM_3243___kdgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 655
# Identity: 398/655 (60.8%)
# Similarity: 398/655 (60.8%)
# Gaps: 119/655 (18.2%)
# Score: 1055.5
#
#
#=======================================
BSNT_03293___ 1 ATGG---AGTCCA--AAGTT-----GTTGAAAACCGTCTGAAAGAAGC-- 38
|||| ||| || ||||| |||.||.|.||||| .|..||
BPUM_3243___k 1 ATGGGGAAGT-CAGCAAGTTTGAGCGTTAAAGAACGTCT---CGCGGCTT 46
BSNT_03293___ 39 -AAAGCTGATTGCAGTCATTCGTTCAAAGGATACACAGGAGGCCTG---- 83
.|||||.||.|||||..| ||||.|.|
BPUM_3243___k 47 GTAAGCTAATCGCAGTGGT-------------------GAGGGCGGGGAG 77
BSNT_03293___ 84 ----TCAGCAG--ATTGAGA---------GTTTGTTAGATAAAGGG-ATT 117
||.|.|| ||||||| |||| ..|||.|||||| .||
BPUM_3243___k 78 CGAATCGGAAGGCATTGAGATCATTCAGCGTTT-AAAGAAAAAGGGTGTT 126
BSNT_03293___ 118 CGTGCAGTTGAAGTGACGTATACAACCCC-----CGG--GGCATCAGATA 160
|||||..||||||||||||||||.||.|| ||| .|||||
BPUM_3243___k 127 CGTGCCATTGAAGTGACGTATACCACGCCCAATGCGGAACGCATC----- 171
BSNT_03293___ 161 TTATCGAATCCTTCCGTAATAGGGAAGATATTTTAATTGGCGCGGGCACT 210
||||.||||||.|...||....|||||.|..|..|.||.||.|||||.
BPUM_3243___k 172 --ATCGCATCCTTTCAGCATGAACAAGATCTGATTGTGGGAGCAGGCACA 219
BSNT_03293___ 211 GTCATCACCGCGCAGCAAGCTGGGGAAGCTGC---TGAGGCTGGCGCGCA 257
.|||.|||....|||||.|| |.||.|.|| |||.||.|||.|.||
BPUM_3243___k 220 ATCACCACACTTCAGCAGGC---GCAATCAGCCATTGACGCAGGCTCACA 266
BSNT_03293___ 258 GTTTATTGTCAGTCCGGG---TTTTTCAGCTGATC-TTGCTGAACATCTA 303
.||||||||||||||.|| |.||||.| || |||..||.|||||.
BPUM_3243___k 267 ATTTATTGTCAGTCCAGGATATCTTTCTG----TCATTGGAGAGCATCTC 312
BSNT_03293___ 304 TCTTTTGTAAAGACACA--TTATATCCCCGGCGTCTTGACTCCGAGCGAA 351
||.|| |.|.|||||| .|||.|.||.||.|||.|.||.||.||.|||
BPUM_3243___k 313 TCATT--TCACGACACACTCTATGTACCAGGTGTCCTCACCCCAAGTGAA 360
BSNT_03293___ 352 ATTATGGAAGC-------GCTGACATTCGGTTTTACGACATTAAAGCTGT 394
||||||.|.|| |||| .||.|.|.|| ..|.|||||.|
BPUM_3243___k 361 ATTATGCAGGCAAAAGCAGCTG-GATACTGCTT------GCTCAAGCTTT 403
BSNT_03293___ 395 TCCCAAGCGGTGTGTTTGG--CATCCCGTTTATGAAAAATTTAGCGGGTC 442
|.||||||||....||.|| .|||| |.|||||||||.|||...||||
BPUM_3243___k 404 TTCCAAGCGGCTCCTTCGGTCTATCC--TATATGAAAAACTTACAAGGTC 451
BSNT_03293___ 443 C-TTTCCCG-CAGGTGACCTTTATTCCGACAGGCGGGATACATCCGTCTG 490
| |||||.| || .||| .||||||||.||.||.|||||.|||||..|.|
BPUM_3243___k 452 CATTTCCAGACA-TTGA-ATTTATTCCAACGGGGGGGATTCATCCAACCG 499
BSNT_03293___ 491 AAGTGCCGGATTGGCTTAGAGCCGGAGCTGGCGCCGTTGGAGTCGGCAGC 540
|.|||||..|.|||||.|.|||.||.||.|..||.||.||.|||||.||.
BPUM_3243___k 500 ATGTGCCAAAATGGCTCAAAGCTGGCGCAGTTGCAGTAGGGGTCGGAAGT 549
BSNT_03293___ 541 CAGCTGGGCAGCTGTTCAAAAGAGGATTTGCAGGCTGT--TTTC--CAAG 586
|||||.|..|||.||.|...|||.||.||.||.||.|| |||| ||
BPUM_3243___k 550 CAGCTTGAAAGCAGTACGGCAGAAGAATTACAAGCGGTTCTTTCTTCA-- 597
BSNT_03293___ 587 TGTAA 591
|||
BPUM_3243___k 598 --TAA 600
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