Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01180 and BPUM_3240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:49
# Commandline: needle
# -asequence dna-align/BSNT_01180___yesM.1.24716.seq
# -bsequence dna-align/BPUM_3240.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01180___yesM-BPUM_3240.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01180___yesM-BPUM_3240.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01180___yesM
# 2: BPUM_3240
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1947
# Identity: 807/1947 (41.4%)
# Similarity: 807/1947 (41.4%)
# Gaps: 885/1947 (45.5%)
# Score: 1344.5
#
#
#=======================================
BSNT_01180___ 1 ATGAAGAAAAGAGTTGCTGGCTGGTACAGGCGGATGAAGATTAAGGATAA 50
BPUM_3240 0 -------------------------------------------------- 0
BSNT_01180___ 51 GCTGTTTGTGTTTCTATCGTTGATTATGGCCGTATCCTTTCTGTTTGTAT 100
.|||.||.|.
BPUM_3240 1 ----------------------------------------ATGTATGAAA 10
BSNT_01180___ 101 ACAGCGGGGTCCA---GTATGCCTTTCATGTGTATGATGAGCAGATTTAC 147
| ||||.| ||||||..| ||...|.|||.||||| |||.|
BPUM_3240 11 A------GGTCAATGCGTATGCGAT---TGAAAAGGATCAGCAG-TTTGC 50
BSNT_01180___ 148 CGCAAGTCCTCGGAGGTGCTTCGGATGTCTTCTGAAAGGATCGAAGA-CG 196
| ||| |||.| |.
BPUM_3240 51 C---------------------------------AAA-----GAATATCT 62
BSNT_01180___ 197 AGCTGAAGAAGATAGAGGATGTGTCATATGAAATCATTACAGACGAACAG 246
||||..|.||.|.| |.||||||||.| ||||.|||
BPUM_3240 63 AGCTTCAAAACAAA-----------AAATGAAATCCT-----ACGACCAG 96
BSNT_01180___ 247 ATTCAGCGCATCCTGAGTATGC-AAAATCGGGATGATACGTATGATCAAT 295
| ||| ||| ||||
BPUM_3240 97 A-------CAT--------TGCGAAAA----------------------- 108
BSNT_01180___ 296 ATCAAATGAAGCAGGAGCTGTGGGATCAGCTTGCGGGATATGCCAGCGA- 344
||.||.|| ||| ||| |||||.| ||.||..|.|
BPUM_3240 109 -------GATGCCGG-GCT------TCA---TGCGGCA-ATTCCTTCTAT 140
BSNT_01180___ 345 TGAAAAGTACATCGATTCCATTCATGTGATTGATGCCCGCG---GCTCAG 391
||||||.|| ||.|| ||.|||| ||| |||.|
BPUM_3240 141 TGAAAAATA-------TCAAT--ATATGAT--------GCGAACGCTTA- 172
BSNT_01180___ 392 AGTATTCAGCCGGAAACAGTTCTTCAGATCTTTTGCAGCAGGAGCAGGA- 440
|||.| ||| ||| ||| || ||.||.||
BPUM_3240 173 -----TCAAC--GAA--AGT------GAT--------GC--GACCATGAC 197
BSNT_01180___ 441 AGAGGTATGTAAGCGAGCGAAAGCGAAAAATGGAAGAAATCTTTGGATGA 490
|.|.||| .||| ||| |||||||..||||| .|||
BPUM_3240 198 ACACGTA--AAAG-------AAG-GAAAAATCAAAGAA-------TATG- 229
BSNT_01180___ 491 CGCTCGGCGGGTCAGATCCTGTCCTGATTTCAGCACGGCAGATCAGGTCC 540
|.|||.||..|| ||.|.|..||| .|
BPUM_3240 230 ----CAGCGAGTGTGA---------------AGGAAGTAAGA------AC 254
BSNT_01180___ 541 TGTCACCAGCTGAGTTTGAACGGCTTGGGCATGGTGCTGATCCAGGTCAA 590
.|||.||..|| || ||.||.|
BPUM_3240 255 CGTCTCCTCCT--------AC------------------ATACAAG---- 274
BSNT_01180___ 591 TGTA--AAACAGATGA---TTCGTGATGTGCCGAAGGATTGGGGCGATTC 635
| |||| ||||| |.|.|||| ||.|.||||
BPUM_3240 275 ---AGCAAAC-GATGACCTTGCTTGAT-----GATGAATTG--------- 306
BSNT_01180___ 636 AGTCGGAGACATTATGATTGCTGACCAAGGCGGTAATTTGGTGTATACGG 685
|.|||.| |.|||| |||
BPUM_3240 307 ------------TCTGAAT----ATCAAG----------------TAC-- 322
BSNT_01180___ 686 CACATGCATCAGCGCATGTTCCTGAGGCAGCAAAAGAGACGCTGAAGCAC 735
|..|||| ||.| |.||||||.||||.|..||.|
BPUM_3240 323 ----TCTATCA----ATCT--------CTGCAAAAAAGACACCAAACC-- 354
BSNT_01180___ 736 CCCGGTTATG---------ACTTGATAAAAAAGAATGGCAAACGTTACTT 776
|||| .|||| || ||
BPUM_3240 355 ------TATGCGCTCTTCACCTTG-----------TG-----------TT 376
BSNT_01180___ 777 TATTTCTTACCTTCAATCATCCTATCAAAATTGGAGCTACTATAACGTCA 826
|.| ||||..|| ||| |||||.|
BPUM_3240 377 TGT---TTACGCTC-----TCC-------ATTGGGG-------------- 397
BSNT_01180___ 827 TCCCCTT-TGATCAGATGTTCGCGAAAAT--TTCCTTTATGAA----AAC 869
||.|.|| || |||| |||.|.|| ||.||..|.||| ||.
BPUM_3240 398 TCGCATTATG----GATG---GCGTATATGATTGCTGGAGGAATATCAAG 440
BSNT_01180___ 870 AGTGATCGGCACATGCTTTCTTCTCTTTTTCT----GTGT-------GGT 908
|...|||| |.|.|||| ||| |.|| |
BPUM_3240 441 ACCAATCG---------TCCATCTC----TCTCGAAGCGTAAAGGAAG-- 475
BSNT_01180___ 909 TTTGCTTTTCGGAAGGAAAATCGCCAACAGCATCACGGAGCCGA-TTGAA 957
|.|||||||||||.| .|.|.|||||.|| ||
BPUM_3240 476 ------TATCGGAAGGAAACT----------TTGATGGAGCGGACTT--- 506
BSNT_01180___ 958 CAGCTTGTGACCGC----GATGAAATCGGTGCAGCACAGCGGCATTGAAG 1003
||.|||.|||.| |||||||| |.|.|.|||.||
BPUM_3240 507 --GCATGTCACCTCAAAGGATGAAAT-----------ATCTGTATTAAA- 542
BSNT_01180___ 1004 CAGGTGTGTCGCTTTCTCTGCCGGAACATACACAGGATGAGGCCGGCATG 1053
||..||.|| ||.|| |.|||
BPUM_3240 543 ------TGAGGCATT-TCAGC------------------------GAATG 561
BSNT_01180___ 1054 CTGAACCGCCATTTTACTGTCATG--ATGAAACGGATTAATGAGCTGATG 1101
| ||||.| ||||||..|||.|.|||...||||
BPUM_3240 562 C-----------------GTCAAGAAATGAAAATGATGATTGAAGAGATG 594
BSNT_01180___ 1102 GAAGAAAATGTGG---------AAAAACAGCTCATTATTAAAGAAACCGA 1142
.||.||||.|..| ||||| ||.|||||.| .||
BPUM_3240 595 AAACAAAAGGCAGCCTTAGATCAAAAA---------ATCAAAGACA-TGA 634
BSNT_01180___ 1143 A-TTGAAAGCACTGCAAGCCCAGATTAACCCGCATTTTTTATATAACACG 1191
| .||||..|.||||||..|||.||.|||||.||||||||||.|||
BPUM_3240 635 AGCTGAAGACGCTGCAAAACCAAATGAACCCCCATTTTTTATTTAA---- 680
BSNT_01180___ 1192 CTCGAGTCCATCA---ATTGGCTGGC-CAAGGC-------GAATCAGCAA 1230
|.|||.| ||.|.||..| ||.||| ||||||||..
BPUM_3240 681 ------TACATTAAACATCGTCTCACGCATGGCTTACTTAGAATCAGCGG 724
BSNT_01180___ 1231 AAG-CAAATCTCAAAAATGGTGGAATCGCTCGGTTT----TCTTCTGCG- 1274
|.| ||.||| ..|.|.||.||..||.|||| |||..||||
BPUM_3240 725 ATGCCACATC------GAGATTGATTCAATCTGTTTCCACTCTCATGCGT 768
BSNT_01180___ 1275 -------AAACAGC-----ATACATATGAAAAAGGATATCGTGACCATTC 1312
.|.|||| .|.|||.|| ..|.|.|| ||.||
BPUM_3240 769 TATTCGCTATCAGCTCTTAGTGCATCTG--TTACGCTA----GAACA--- 809
BSNT_01180___ 1313 AGGAGGAGGCGGACATTGTACGTCACTATATGACTATTCAGCGATTTC-- 1360
||.||.| |.|.|| |||| |.||.||| ||||
BPUM_3240 810 AGAAGTA-----AAAGTG---GTCA----AAGAATAT-------TTTCAT 840
BSNT_01180___ 1361 -------------GATTTGAAGAGCGCCTGAATTTCACGTTGGATATTGA 1397
||||||..||.|| |.|||| .||.|.|...|
BPUM_3240 841 ATACAAGAAACAAGATTTGCCGATCG------TATCAC-ATGCAAAACAA 883
BSNT_01180___ 1398 CGATGAGGTGAAGCAT-------TG-CCTCATTCCGAAACTGACGCTCCA 1439
|.|| ||.||||.|.| || .||.||.||.|..||.||..|.||
BPUM_3240 884 CCAT-AGATGAATCCTGTTTATCTGTACTTATCCCAAGTCTCACCTTACA 932
BSNT_01180___ 1440 GCCGCTTGCGGAAAATGC---GATTC---------------------AAT 1465
||||||||..|||||||| .|||| ||.
BPUM_3240 933 GCCGCTTGTTGAAAATGCCTTTATTCATGGCGTCGAGCCAAAGGAGGAAG 982
BSNT_01180___ 1466 ACGCGCTT---GAACCCT-----TTACAA------GGCCATGCG-CCATC 1500
|||..||| ||.|.|| |..||| |||.|||.| ..||.
BPUM_3240 983 ACGGACTTGTAGAGCTCTCGATCTATCAAGAAGGCGGCTATGTGATGATT 1032
BSNT_01180___ 1501 CGGATTCAGG-------------------CGAAAAAGA-CGAAGGGCTGT 1530
|||||||.|| .|||.|||| .|||| |.
BPUM_3240 1033 CGGATTCGGGACAATGGGGTGGGAATCAATGAACAAGAGAGAAG----GA 1078
BSNT_01180___ 1531 GTTTG-TATTACGGTCGAAGAT----AACGGCCCTGGCATGGATGGACGG 1575
|.||| ||| |.|...||||| || |.|||...||
BPUM_3240 1079 GATTGCTAT--CAGAAAAAGATGAGGAA-GACCCAAACA----------- 1114
BSNT_01180___ 1576 ATTCTTGAATCAACGG------ACGGAAGAGGAATCGGCCTGTGGAATAT 1619
||||||.|.||.|| ||| ||||||||.||..|.|||
BPUM_3240 1115 --TCTTGAGTAAAGGGCATTCAACG-----GGAATCGGTCTTCGTAAT-- 1155
BSNT_01180___ 1620 TCGCGAGCGCATCA-------GCCTGACATTCGGAGAGCCATACGGCTTG 1662
|.|| .|||| ||.||...|.||||| |||....||
BPUM_3240 1156 --GTGA---TATCAAGGCTGCGCTTGTTTTACGGAG-----TACAAAATG 1195
BSNT_01180___ 1663 C---------GGATTCAGAGTGAGCATGAA--AAGGGAACGAGGATTGTG 1701
| .||||||.||..| || ||||| ||.|..|||
BPUM_3240 1196 CTCTTCAAATTGATTCAAAGCCA-----AACGAAGGG-ACCACCATT--- 1236
BSNT_01180___ 1702 ATCACAATACCGTG------CCGA--AATGAGG---TGG--TG-TGA 1734
|||| || |||| ||.|||| .|| || |||
BPUM_3240 1237 ----CAAT----TGGCTATTCCGATGAAGGAGGGACCGGCATGCTGA 1275
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