Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04831 and BPUM_3238
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_04831___yurO.1.24716.seq
# -bsequence dna-align/BPUM_3238.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04831___yurO-BPUM_3238.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04831___yurO-BPUM_3238.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04831___yurO
# 2: BPUM_3238
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1616
# Identity: 712/1616 (44.1%)
# Similarity: 712/1616 (44.1%)
# Gaps: 697/1616 (43.1%)
# Score: 1196.0
#
#
#=======================================
BSNT_04831___ 1 TTGAAG---AAA---------ATGTTGTT---GTTCT---------TGAT 26
.||||| ||| |.|.|||| |.||| |.||
BPUM_3238 1 ATGAAGGTTAAATTAGGCTTTACGCTGTTAGCGCTCTGTATGCTTATAAT 50
BSNT_04831___ 27 CATTGCAGCTGTCAGTATGTTCACC-----ATTGCAGGCTGTTCGAGCCA 71
||.||| |||| .|||||.| |.| || ||..||
BPUM_3238 51 CACTGC--CTGT-----AGTTCAACGACGAACT-CA--------GATGCA 84
BSNT_04831___ 72 AAGCAGTTCAGCGGACGGA------AAGGT-GACATTGAAATTTTTCCAC 114
||..| ||.|||.||| |||.| ||||| |||.||
BPUM_3238 85 AAAAA----AGAGGATGGAGCAGAGAAGCTCGACAT-----TTTCTC--- 122
BSNT_04831___ 115 AGATGGCCGA-AGGAGCCGGAAAAAAGTTATTTTGAAGAGGTTG---TTA 160
.|||..|| .|||||.|| |||.||||.|| |.|
BPUM_3238 123 --TTGGTGGACTGGAGCAGG-------------TGAGGAGGATGGACTAA 157
BSNT_04831___ 161 AGGAA------------TTTGAAAAAGAACACCCAGATATCGATATTCAA 198
|.|.| ||||||.|..||.||..|||||||...|||.||
BPUM_3238 158 AAGCACTCATTCAACTGTTTGAAGAGAAAAACAAAGATATCCCAATTGAA 207
BSNT_04831___ 199 ATTGAAGCCGTTTTAAATGAC--TCCTATAAAGATAAAATT---AAGG-- 241
|.||.||||||...| |.| |.|| |.||.||.| ||||
BPUM_3238 208 AATGCAGCCGTCGCA---GGCGGTGCT-----GGTACAAATGCAAAGGCT 249
BSNT_04831___ 242 --TC-----------ATGC-TGGGAACCACCAGCC--CTCCTGACATT-- 273
|| |||| .||.|||.|||.||| || |||||
BPUM_3238 250 GTTCTGACTAGCCGGATGCAAGGAAACGACCCGCCAGCT----ACATTCC 295
BSNT_04831___ 274 ---TACTTCTCTTGGAGCGATGAGTTTGCTTTTAAATTTATCAGA----- 315
|||.|..| |||||| ||| .|..||.|||
BPUM_3238 296 AAGTACATGGC--GGAGCG--GAG-----------CTGAATGAGAGCTGG 330
BSNT_04831___ 316 ---------GGCAATAAAG----CACT---TGATCT-------------- 335
||||| ||.| |.|| ||||||
BPUM_3238 331 GTCGCAGCGGGCAA-AATGGAGCCGCTCGATGATCTATATGAAAAAGAAG 379
BSNT_04831___ 336 -CTCGTCCTACTACAAA-------AATGA--CACCGA--TTGGTCATCAC 373
||.| .|..||||| |||.| ||.||| || ||||.||.
BPUM_3238 380 GCTGG---AAGGACAAATTTCCGGAATCACTCATCGACCTT-GTCAGCAA 425
BSNT_04831___ 374 AGCTCGTTCAATCGCAAATTACACCATTTACTTATGAAAACAAG-CAATA 422
|| ||.|.|||.| |.|||.|.| ||.|| .||||
BPUM_3238 426 AG--------ATGGGAAAAT---CTATTCAGT-------ACCAGTGAATA 457
BSNT_04831___ 423 TGGCGT-ACCGTGGCAAATGGACGCTAAATCATTCTT--CTATAATA--A 467
| | ||.|.||| |||| |.||| .|||||.| |
BPUM_3238 458 T----TCACAGGGGC-AATG------------TGCTTTGGTATAACAAGA 490
BSNT_04831___ 468 AGACATTTTCCAAAAGCTGA------ATCTTGATCCCCCGAAGACGTGGG 511
||..|||| |.||| || |.||.||.||.|.|||.|..|
BPUM_3238 491 AGGTATTT-------GATGATGCAGGAT-TAGAGCCGCCAACGACCTTTG 532
BSNT_04831___ 512 ATGAATTAATCGATGTGTCAAAAAAGC-------TGAAAG-AACATGGCT 553
||||.|| |.||||||.||| |.|||| ||.|.|||.
BPUM_3238 533 ATGAGTT--------TTTCAAAACAGCAGATGCATTAAAGAAAAAAGGCA 574
BSNT_04831___ 554 ACACACCGATCAGCTTTGGAACAAAGGCGACTTGGACAATCTCGCACTAT 603
..|||||| ||.|||||
BPUM_3238 575 TTACACCG--------------------------------CTTGCACT-- 590
BSNT_04831___ 604 ATCGGCACGCTTAATCAGCGGATGGTCGATGAAAAAACACGGGAAAAGGA 653
||.|||| |||.|||...||
BPUM_3238 591 ----------------AGGGGAT--------AAAGAACCTTGG------- 609
BSNT_04831___ 654 CTATAACGC--CAAAAC----------GGGTGAATTTACTGATGAAGGCT 691
|| |||.|| |.||| |||||.| .|||
BPUM_3238 610 -------GCAGCAACACATTTGTTTGAGAGTG----TACTGCT--CGGC- 645
BSNT_04831___ 692 ACGTAAAAGCACTTGAAAAGCTTCAAGAGCTGATGCCTTACTTTAATAAA 741
|.||.|.|.|||||.|.|| ||.||
BPUM_3238 646 -------------------GTTTTAGGCGCTGACGACT-------ATCAA 669
BSNT_04831___ 742 CATGTAAACT-----CCGTCGACCACGAATATGTGA-GACAGCAATTTAA 785
||||| |.|.||| ||.|||.||| || ||| |||| ||
BPUM_3238 670 -----AAACTTTGGGCTGGCGA-CATGAAAATG-GATGAC-GCAA---AA 708
BSNT_04831___ 786 GAGCGGAAAGTCGGCGATGATATATGCGGAAACAGCGGAAATCAAGCTGG 835
|.|..|.||| |||| .|||||.|..|||..|| ||.
BPUM_3238 709 GTGAAGGAAG-CGGC--AGATATTTTTGGACGCA-------------TGC 742
BSNT_04831___ 836 TTGAACCGGTTAATCTCGGGATGTTCCCATTTCCTGAAATCAGCGGGCAG 885
|||||...||.||| ||||.||.||.|||..|.|| |.|||
BPUM_3238 743 TTGAATACGTCAAT-----GATGATCACAGTTCACGTAA----CTGGC-- 781
BSNT_04831___ 886 AAAGGAT-CTTCAGAAG--CGT----TAACGGGAGCGCCGGAAGGA--TT 926
||||| |.|| |.|| ||| .||.|||| .||.|.||.|| .|
BPUM_3238 782 --AGGATGCCTC-GCAGCTCGTAGCAAAAGGGGA-AGCTGCAATGAATGT 827
BSNT_04831___ 927 CATGATCTCCTCAAGAACAAAACATCCGAAGGAAGCGATGG---AATTTT 973
||||..|..|| || ||||.|| |.|||.
BPUM_3238 828 CATGGGCGACT-------------------GG--GCGAAGGGGTACTTTG 856
BSNT_04831___ 974 TGCA-GTTCT-----TGACGTCGA--AAAGAAT---------GGGCGAAA 1006
||.| |.||| |||.|..|| |||||.| .|||||
BPUM_3238 857 TGAATGATCTGGATCTGAAGGTGAATAAAGACTTTGGATACGTGGCGA-- 904
BSNT_04831___ 1007 AGCTCGTG--AAAGATGTCGGGAA------------------ATACA-GT 1035
|||.|| |..|| ||||| ||||| .|
BPUM_3238 905 --CTCCTGGTACTGA----GGGAAGCTTTATGGTGATCACCGATACATTT 948
BSNT_04831___ 1036 GCAGTGC---AAGGTACGGCTACTGAAGAAAATGCAACAGCCATTCAGCG 1082
|.|.||| |||| || ||.||||||||...|..|
BPUM_3238 949 GGACTGCCAAAAGG--CG--------------TGGAACAGCCAGAAAATG 982
BSNT_04831___ 1083 TGAAGCCGTTCAGCATATTGTT---------------------------- 1104
||||| |.|||.||
BPUM_3238 983 TGAAG---------AAATTCTTATCTGTCTTGGGATCTGTGGAAGGACAG 1023
BSNT_04831___ 1105 GATGCCAAATCAATGGTTCC-----ATGGTTTGA----------TATGGA 1139
||||| |.|||| ||| |.||.|.|| |.||||
BPUM_3238 1024 GATGC--ATTCAA----TCCGCTGAAGGGATCGATTCCGGCACGTGTGGA 1067
BSNT_04831___ 1140 TGTCGATGTTGAAGTCGCA----GATGCGTACCTAACA--GGCG------ 1177
||..|||||| ||..| ||||..|||..||.| ||||
BPUM_3238 1068 TGCTGATGTT----TCTAAATATGATGAATACGGAAAATCGGCGATGAAG 1113
BSNT_04831___ 1178 -----TCCAG---CAAATGCTTGGCG---------GCGACATGACACCG- 1209
|..|| |||| || ||||| ||| |||| |
BPUM_3238 1114 GCATTTAAAGAATCAAA-GC-TGGCGCCGTCTCTCGCG-CATG-----GT 1155
BSNT_04831___ 1210 -CAGCAGGTGATGA-----------------------AAGCCGT------ 1229
||||.|.|||.|| |||||||
BPUM_3238 1156 TCAGCTGCTGAAGAAGGGTTTGTGACAAAAGCGAATCAAGCCGTCAATAT 1205
BSNT_04831___ 1230 -----TC-----AAAAGGCAGCAAAG-CAGGTGAGGGCGTCAGCT----- 1263
|| |||||.|||| || |||.| .|..|||.||
BPUM_3238 1206 CTTCGTCACACAAAAAGACAGC--AGCCAGTT---TGTTTCATCTTTAAA 1250
BSNT_04831___ 1264 ----------GAATAA 1269
.|||||
BPUM_3238 1251 AGATTCAATGAAATAA 1266
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