Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04830 and BPUM_3237
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_04830___yurN.1.24716.seq
# -bsequence dna-align/BPUM_3237.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04830___yurN-BPUM_3237.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04830___yurN-BPUM_3237.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04830___yurN
# 2: BPUM_3237
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1153
# Identity: 530/1153 (46.0%)
# Similarity: 530/1153 (46.0%)
# Gaps: 455/1153 (39.5%)
# Score: 919.5
#
#
#=======================================
BSNT_04830___ 1 ------------------------------------------TTGGTCAA 8
...|||||
BPUM_3237 1 ATGCGTATGGATACATCGCCGATCACAAAGACAACAACACCCAAAGTCAA 50
BSNT_04830___ 9 -----TCAGAATAAAAT--------AATCCCCTA--------TTTGTTTT 37
||.|.|.||||| .|||..||| |.|.||||
BPUM_3237 51 ACGCGTCCGGAGAAAATGGAGTGGGGATCAGCTACTAGCGCTTCTCTTTT 100
BSNT_04830___ 38 TGGTGCCC-----GCTCTCGTTTTTTTA-----CTTTTCGTTTATATCCC 77
| .|||| ||| ||.||.||| |||| ||||| |
BPUM_3237 101 T--AGCCCCGTCAGCT---GTGTTATTATTCATCTTT--GTTTA-----C 138
BSNT_04830___ 78 GATTT-------TTGAGAATGTATTCCTCAGCCTGTT-TC--AGTGGAGC 117
|.||| |.||.|..||||...||| || || |.||||.|
BPUM_3237 139 GGTTTTATTGGCTGGACAGGGTATGTGTCA-----TTATCAAATTGGACC 183
BSNT_04830___ 118 TCATTTTCTCCGGAAAAAACGTTTATC--------GGCTTAAAAAACTAT 159
||..||..|||.|| |||.|| |.||| .||||||||
BPUM_3237 184 TCGCTTGTTCCTGA-------TTTCTCTTTCGCAGGTCTT-CAAAACTAT 225
BSNT_04830___ 160 GTTGAATTATTTCATGATCCTGTCTT-----------CTATCAGGCA--- 195
|||||.|||| || ||.||||.||
BPUM_3237 226 -------------ATGATGCTGT-TTCAAGATTTTCGCTTTCAGTCAGAT 261
BSNT_04830___ 196 CTTACCAATAATGTGCTTTATGCAGTGATCTCAATTGTAT----GCCAGG 241
|||...||||..||..|||.|.| |||...||.||| ||| |.
BPUM_3237 262 CTTCGGAATACGGTCTTTTTTAC-----TCTATTTTTTATTGGAGCC-GT 305
BSNT_04830___ 242 TATTTGGC----GGTTT---------GATTTTGGCGGCGGTGCTTGAGGA 278
|||| || |||.| ||||| |.||.||
BPUM_3237 306 TATT--GCCTCTGGTCTCGCACTTGCGATTT---------TACTAGA--- 341
BSNT_04830___ 279 TAAGCTGGTCAGAAAAT----GG------------TCGCCGT---TTTTT 309
||||||||| || |||...| |||||
BPUM_3237 342 --------TCAGAAAATCAAGGGTGAATCTCTATTTCGGAATTTATTTTT 383
BSNT_04830___ 310 CGTAC------CGTTTTCTTTT----TGCCGGTTGTCATCT--CAATGAC 347
|.|.| |..|||||||| ||.|.|..|||.||| |||||
BPUM_3237 384 CTTTCCAATGGCTCTTTCTTTTGTTGTGACAGGGGTCGTCTGGCAATG-- 431
BSNT_04830___ 348 TGTGATCGCGCTTTTGTTTGATTTTATTTACAATCCGGAGACAGG-GCTG 396
||||||| ||.|||...||.|| |
BPUM_3237 432 -------------------GATTTTA-----AACCCGTCCACTGGAG--- 454
BSNT_04830___ 397 TTGAATC---------AGCTGCTTCAGGCCATCGGTCTTGATCAGCTGAC 437
|||||| ||..|||| |||.| |||||..|.
BPUM_3237 455 -TGAATCTCTTTTTAAAGACGCTT---------GGTAT---TCAGCCTAA 491
BSNT_04830___ 438 GAGGGCCTGGCTCGGGGATGACAGCACAGCTATGC----TTT--CTG--- 478
| |||..|..|||| || |.|||..|..|| ||| |||
BPUM_3237 492 G------TGGTACACGGAT-AC-GAACATTTTAGCCGGATTTGCCTGGGG 533
BSNT_04830___ 479 ------TCATTTTTGTGTCCCAGTGGCAAT-----CTGTCGGTTAT-ATT 516
|.|.|||.|||||||.|.|||.|| |||||| | |||
BPUM_3237 534 GAAAATTGAGTTTGGTGTCCCTGCGGCCATGATTGCTGTCG----TCATT 579
BSNT_04830___ 517 GC------------GAT-----GTTGTACATCGTGTCGATTCA------- 542
|| ||| |||.|.| || ||.||||..|
BPUM_3237 580 GCAGCTGTTTGGCAGATGACTGGTTTTTC-TC-TGGCGATGTATTTGGCA 627
BSNT_04830___ 543 --------AAAAATACCGGATGAACTGTA--TGAAGCGGCCCGGCTTGAC 582
|...||.||.||.||| ||| .||.||.||..|..|.||.
BPUM_3237 628 GGTTTGAGAGGCATTCCAGAGGAA--GTAAGAGAGGCTGCTAGAATGGAT 675
BSNT_04830___ 583 GGCGCGGGTAA---AATTCAGCAGTTTTTTC---ATATTACTGTTCCCCA 626
||||| || ||| .||||.|||..| |.||||.|.||||.|
BPUM_3237 676 GGCGC----AACCGAAT--GGCAGATTTACCGGAAGATTATTTTTCCTC- 718
BSNT_04830___ 627 GACGAAAG-AGATGTCTTTTGTTGC-GGTGGTCATGACGCTGACCGGGGC 674
.||.|||| .|| ||..||| .|| |||||.| .
BPUM_3237 719 TACTAAAGCCGA------TTACTGCAAGT-GTCATTA------------T 749
BSNT_04830___ 675 CTTTACGG--------TCTTTAATGA--GCCG--TACATTT------TGA 706
|.|||.|| ||.||||.|| ..|| |..|||| |||
BPUM_3237 750 CATTATGGCTCATATTTCATTAAAGATTTTCGATTTGATTTACTCGATGA 799
BSNT_04830___ 707 CAGGCGGCGGGCCGGG---AAAC---GCGTCAGAAGTCTTGAGCACGTTT 750
|| ||.||||| |||| |...|||| |.||..|..|||||
BPUM_3237 800 CA------GGACCGGGTGCAAACTTTGTTACAGA--TGTTCCGGGCGTTT 841
BSNT_04830___ 751 TTATAT---AAAAGCGCCTTTACAGAGGA------TATGATGG----GCT 787
..||.| |||.| .||||| |||||| ||||..|| ||
BPUM_3237 842 ACATGTTTGAAATG-ACCTTT--AGAGGAAACCATTATGCAGGTGGTGC- 887
BSNT_04830___ 788 ACGCC-TCAGCGATTGCCACTGTCGTGTTAATC---ATTACGCTTGCATT 833
|||| || ||||| |||..||.|.||| .||.||.| |.||
BPUM_3237 888 -CGCCATC-GCGAT------TGTGATGCTGATCTCTGTTGCGGT--CTTT 927
BSNT_04830___ 834 ATCGCTCATG-CAAATGAAGTTCTTTAAAACCGGAAAGGAGGAGTAA--- 879
|||| || ||.|| .|.||.|..|.|||| ||||.||.||.|
BPUM_3237 928 ATCG----TGCCATAT---CTCCTGTCGAGCCGG-AAGGGGGCGTCATCA 969
BSNT_04830___ 879 --- 879
BPUM_3237 970 TGA 972
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