Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04827 and BPUM_3236
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:34
# Commandline: needle
# -asequence dna-align/BSNT_04827.1.24716.seq
# -bsequence dna-align/BPUM_3236.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04827-BPUM_3236.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04827-BPUM_3236.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04827
# 2: BPUM_3236
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity: 308/912 (33.8%)
# Similarity: 308/912 (33.8%)
# Gaps: 513/912 (56.2%)
# Score: 649.5
#
#
#=======================================
BSNT_04827 0 -------------------------------------------------- 0
BPUM_3236 1 ATGACAGCTAGATGGTTTGTCCGTCCAGTCCTTTATGCTTTATTGATTTT 50
BSNT_04827 0 -------------------------------------------------- 0
BPUM_3236 51 GTGCAGCCTTTTTTTTCTCATGCCAGTCTATGTCATGCTCGTCACAAGTT 100
BSNT_04827 0 -------------------------------------------------- 0
BPUM_3236 101 TGAAGCCATTAAGTGAAGTGACCCTTGAAAAAATGTGGGCGCTGCCATCA 150
BSNT_04827 0 -------------------------------------------------- 0
BPUM_3236 151 ACACTCGATTTTTCAAGCTATCAAATCGCATTTGAAAAGCTAGCGCCCAA 200
BSNT_04827 0 -------------------------------------------------- 0
BPUM_3236 201 TTTAATGAATTCTCTTTATCTAGTCATTCCGGCCACCTTATTATCAGCTG 250
BSNT_04827 0 -------------------------------------------------- 0
BPUM_3236 251 TCTTAGGGGCGATGAATGGCTATGTCCTATCAAAATGGCGTTTCAAAGGA 300
BSNT_04827 1 ---------------ATGCTGACGCCGCAGGTCAGTCTT----ATGCCGC 31
|.|||||.|| |.|| |||
BPUM_3236 301 TCGGAAGTGGTCTTTACGCTGATGC----------TGTTTGGAATG---- 336
BSNT_04827 32 TTTATTCTAT-------TAT-----------TCAGTCGCTT--------- 54
|||||||.|| ||| |||.||..||
BPUM_3236 337 TTTATTCCATACCAAAGTATCCTCATTCCACTCATTCAATTTTTACGTGA 386
BSNT_04827 55 ----GGCCTGTACAATACGTA-------TTGGGCGTTAATCC-TGCCGTA 92
||..||||||||.|| | ||.||.|.|..||| ||.||||
BPUM_3236 387 AGTCGGATTGTACAATTCG-ATTCCAGGTTTGGTGCTTGTCCATGTCGTA 435
BSNT_04827 93 TGCGG-CTTATCGGATCCCATTCACCATCATTTTGATCCGCTCTTAT-TT 140
|..|| ||| |||.||||.| ||||| || ||
BPUM_3236 436 TATGGACTT--------CCAATCACAA-----------CGCTC--ATGTT 464
BSNT_04827 141 TC----TTTCTAT-------TTCC-----AAAGAATTGGAGGAGGCGGCC 174
|| .|||||| |||| |||..||| ||..||||.
BPUM_3236 465 TCGAAACTTCTATGTGAGCATTCCTGATGAAATGATT----GAATCGGCA 510
BSNT_04827 175 TATTTGGATGG-GTGTACAAGTTTT----GGAGTATTTTTCAGAATT--- 216
.|..||||.|| | ||.|.||| ||| ||||||||..|
BPUM_3236 511 AAAATGGACGGCG----CAGGGTTTATCGGGA----TTTTCAGACATATG 552
BSNT_04827 217 -TTCTTAC-----CGATGAGCGTGCCGATTTTGGTGACATCCGGCATTTT 260
|||||.| ||||.| |.|..||||.||...|| ||..|||
BPUM_3236 553 ATTCTTCCGCTTTCGATCA-----CAGGGTTTGTTGTGGTC--GCGATTT 595
BSNT_04827 261 GACGGCTTAC-CATACATGGAATGAGTTTATGTTTGCGATTATTTTCATA 309
|.|.|.|.|| .||...||||||||||| .||||||.||..
BPUM_3236 596 GGCAGTTCACAAATGTGTGGAATGAGTT----------CTTATTTGCAGT 635
BSNT_04827 310 GATGATGAGAATTTGCGGACCATTCCAGCCGGGCTGATGCAGTTCAGAGA 359
.|.|||||..| .||||||.||| |||||.| ||||| |||
BPUM_3236 636 CACGATGACCA-CTGCGGAGCAT--CAGCCAG--TGATG--GTT------ 672
BSNT_04827 360 CGCGCTG----------CAGACAG-----------ACTGGGGCGTCCTGC 388
||..|| |||.||| |.|||..|||||...
BPUM_3236 673 -GCCTTGCAAAATCTATCAGGCAGTCAAATTGTGCAATGGAACGTCCAAA 721
BSNT_04827 389 TGGC-GGGGTTAACGATTTCAGCCGC---GCCGA---TTATTATTCTATT 431
|||| |||| |.||.|..||||| ||||| || ||..|||||.
BPUM_3236 722 TGGCAGGGG----CAATATTGGCCGCACTGCCGACACTT-TTGGTCTATA 766
BSNT_04827 432 TTTATTGATGCAG-AAATATTTTGTCCGCGGG---ATTGCAAGCGGCAGT 477
|| .||.| |.| |||||.||||||...||| .||||| |||..|
BPUM_3236 767 TT--CTGCT-CGGAAAATACTTTGTCAAAGGGCTTCTTGCA---GGCTCT 810
BSNT_04827 478 GTAAAAGGATAA 489
||.|||||||||
BPUM_3236 811 GTCAAAGGATAA 822
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