Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04827 and BPUM_3236

See Amino acid alignment / Visit BSNT_04827 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:34
# Commandline: needle
#    -asequence dna-align/BSNT_04827.1.24716.seq
#    -bsequence dna-align/BPUM_3236.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04827-BPUM_3236.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04827-BPUM_3236.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04827
# 2: BPUM_3236
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity:     308/912 (33.8%)
# Similarity:   308/912 (33.8%)
# Gaps:         513/912 (56.2%)
# Score: 649.5
# 
#
#=======================================

BSNT_04827         0 --------------------------------------------------      0
                                                                       
BPUM_3236          1 ATGACAGCTAGATGGTTTGTCCGTCCAGTCCTTTATGCTTTATTGATTTT     50

BSNT_04827         0 --------------------------------------------------      0
                                                                       
BPUM_3236         51 GTGCAGCCTTTTTTTTCTCATGCCAGTCTATGTCATGCTCGTCACAAGTT    100

BSNT_04827         0 --------------------------------------------------      0
                                                                       
BPUM_3236        101 TGAAGCCATTAAGTGAAGTGACCCTTGAAAAAATGTGGGCGCTGCCATCA    150

BSNT_04827         0 --------------------------------------------------      0
                                                                       
BPUM_3236        151 ACACTCGATTTTTCAAGCTATCAAATCGCATTTGAAAAGCTAGCGCCCAA    200

BSNT_04827         0 --------------------------------------------------      0
                                                                       
BPUM_3236        201 TTTAATGAATTCTCTTTATCTAGTCATTCCGGCCACCTTATTATCAGCTG    250

BSNT_04827         0 --------------------------------------------------      0
                                                                       
BPUM_3236        251 TCTTAGGGGCGATGAATGGCTATGTCCTATCAAAATGGCGTTTCAAAGGA    300

BSNT_04827         1 ---------------ATGCTGACGCCGCAGGTCAGTCTT----ATGCCGC     31
                                    |.|||||.||          |.||    |||    
BPUM_3236        301 TCGGAAGTGGTCTTTACGCTGATGC----------TGTTTGGAATG----    336

BSNT_04827        32 TTTATTCTAT-------TAT-----------TCAGTCGCTT---------     54
                     |||||||.||       |||           |||.||..||         
BPUM_3236        337 TTTATTCCATACCAAAGTATCCTCATTCCACTCATTCAATTTTTACGTGA    386

BSNT_04827        55 ----GGCCTGTACAATACGTA-------TTGGGCGTTAATCC-TGCCGTA     92
                         ||..||||||||.|| |       ||.||.|.|..||| ||.||||
BPUM_3236        387 AGTCGGATTGTACAATTCG-ATTCCAGGTTTGGTGCTTGTCCATGTCGTA    435

BSNT_04827        93 TGCGG-CTTATCGGATCCCATTCACCATCATTTTGATCCGCTCTTAT-TT    140
                     |..|| |||        |||.||||.|           |||||  || ||
BPUM_3236        436 TATGGACTT--------CCAATCACAA-----------CGCTC--ATGTT    464

BSNT_04827       141 TC----TTTCTAT-------TTCC-----AAAGAATTGGAGGAGGCGGCC    174
                     ||    .||||||       ||||     |||..|||    ||..||||.
BPUM_3236        465 TCGAAACTTCTATGTGAGCATTCCTGATGAAATGATT----GAATCGGCA    510

BSNT_04827       175 TATTTGGATGG-GTGTACAAGTTTT----GGAGTATTTTTCAGAATT---    216
                     .|..||||.|| |    ||.|.|||    |||    ||||||||..|   
BPUM_3236        511 AAAATGGACGGCG----CAGGGTTTATCGGGA----TTTTCAGACATATG    552

BSNT_04827       217 -TTCTTAC-----CGATGAGCGTGCCGATTTTGGTGACATCCGGCATTTT    260
                      |||||.|     ||||.|     |.|..||||.||...||  ||..|||
BPUM_3236        553 ATTCTTCCGCTTTCGATCA-----CAGGGTTTGTTGTGGTC--GCGATTT    595

BSNT_04827       261 GACGGCTTAC-CATACATGGAATGAGTTTATGTTTGCGATTATTTTCATA    309
                     |.|.|.|.|| .||...|||||||||||          .||||||.||..
BPUM_3236        596 GGCAGTTCACAAATGTGTGGAATGAGTT----------CTTATTTGCAGT    635

BSNT_04827       310 GATGATGAGAATTTGCGGACCATTCCAGCCGGGCTGATGCAGTTCAGAGA    359
                     .|.|||||..| .||||||.|||  |||||.|  |||||  |||      
BPUM_3236        636 CACGATGACCA-CTGCGGAGCAT--CAGCCAG--TGATG--GTT------    672

BSNT_04827       360 CGCGCTG----------CAGACAG-----------ACTGGGGCGTCCTGC    388
                      ||..||          |||.|||           |.|||..|||||...
BPUM_3236        673 -GCCTTGCAAAATCTATCAGGCAGTCAAATTGTGCAATGGAACGTCCAAA    721

BSNT_04827       389 TGGC-GGGGTTAACGATTTCAGCCGC---GCCGA---TTATTATTCTATT    431
                     |||| ||||    |.||.|..|||||   |||||   || ||..|||||.
BPUM_3236        722 TGGCAGGGG----CAATATTGGCCGCACTGCCGACACTT-TTGGTCTATA    766

BSNT_04827       432 TTTATTGATGCAG-AAATATTTTGTCCGCGGG---ATTGCAAGCGGCAGT    477
                     ||  .||.| |.| |||||.||||||...|||   .|||||   |||..|
BPUM_3236        767 TT--CTGCT-CGGAAAATACTTTGTCAAAGGGCTTCTTGCA---GGCTCT    810

BSNT_04827       478 GTAAAAGGATAA    489
                     ||.|||||||||
BPUM_3236        811 GTCAAAGGATAA    822


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