Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05457 and BPUM_3235

See Amino acid alignment / Visit BSNT_05457 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_05457___pmi.1.24716.seq
#    -bsequence dna-align/BPUM_3235___pmi.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05457___pmi-BPUM_3235___pmi.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05457___pmi-BPUM_3235___pmi.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05457___pmi
# 2: BPUM_3235___pmi
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 977
# Identity:     677/977 (69.3%)
# Similarity:   677/977 (69.3%)
# Gaps:          52/977 ( 5.3%)
# Score: 2148.5
# 
#
#=======================================

BSNT_05457___      1 ATGACGCAATCACCGATTTTTCTAACGCCTGTGTTTAAAGAAAAAATCTG     50
                     ||||.|||.|||||.||||||.||..|||||..||.||.||.|.|||.||
BPUM_3235___p      1 ATGAAGCAGTCACCAATTTTTTTACTGCCTGAATTGAAGGAGAGAATATG     50

BSNT_05457___     51 GGGCGGAACCGCTTTACGAGATAGATTTGGATACAGTATTCCTTCAGAAT    100
                     |||.||.||.||.|||.|||||..||||||.||...|||||||||.|||.
BPUM_3235___p     51 GGGAGGTACAGCCTTAAGAGATCAATTTGGCTATGATATTCCTTCTGAAC    100

BSNT_05457___    101 CAACGGGGGAATGCTGGGCCATTTCCGCTCATCCAAAAGGACCGAGCACT    150
                     .||||||.|||||||||||.|||||.|||||||||||.|||||.||   |
BPUM_3235___p    101 AAACGGGAGAATGCTGGGCAATTTCTGCTCATCCAAACGGACCAAG---T    147

BSNT_05457___    151 GT--TGCAA-ATGGCCCGTATAAAGGAAAGACATTGATCGAGCTTTGGGA    197
                     ||  ||||| |.||.||.||||||||.||.||..|||||||.||.|||||
BPUM_3235___p    148 GTCGTGCAAGACGGTCCATATAAAGGGAAAACGCTGATCGAACTATGGGA    197

BSNT_05457___    198 AGAGCACCGTGAAGTATTCGGCGGTGTAGAGGGGGATCGGTTCCCGCTTC    247
                     ..|.|||.|.|||.|.|||||.||..||||.||.||..|.||||||||..
BPUM_3235___p    198 CAATCACAGAGAATTGTTCGGGGGAATAGAAGGCGACAGATTCCCGCTGT    247

BSNT_05457___    248 TGA--AAAAGCTGCTGGATGTGAAGGAAGGTAC--GTCAATTAAAGTTCA    293
                     |.|  ||||  |..|.||||..||..|||  ||  |||..||.|||||||
BPUM_3235___p    248 TAACCAAAA--TTTTAGATGCAAACCAAG--ACTTGTCCGTTCAAGTTCA    293

BSNT_05457___    294 CCCTGATGATTACTATGCCGGAGAAAAC--GAAGAGGGAGAACTCGGCAA    341
                     .||.||||||.|.|||| |||| ||.||  |||.|.||.||.||.||.||
BPUM_3235___p    294 TCCAGATGATGATTATG-CGGA-AAGACATGAAAATGGCGAGCTTGGAAA    341

BSNT_05457___    342 GACGGAATGCTGGTACATTATCGACTGTAAGGAAAACGCAGAAATCATTT    391
                     .||.||.||||||||.||.||.|||||.||.|||...||||||||.||.|
BPUM_3235___p    342 AACAGAGTGCTGGTATATCATTGACTGCAAAGAAGGAGCAGAAATGATCT    391

BSNT_05457___    392 ACGGGCATACGGCCCGCTCAAAAACCGAACTTGTCACAATGATCAACAGC    441
                     |.|||||.|..||..|..|||.|||.||.|||||.||.|||||.|||||.
BPUM_3235___p    392 ATGGGCACAGCGCAAGAACAAGAACTGAGCTTGTGACCATGATGAACAGT    441

BSNT_05457___    442 GGTGACTGGGAGGGCCTGCTGCGAAGAATCAAAATTAAACCGGGTGATTT    491
                     ||.||.|||||.||.||..||||..|..||||.|||||.||.||||||||
BPUM_3235___p    442 GGAGATTGGGAAGGTCTTTTGCGTGGTGTCAAGATTAAGCCTGGTGATTT    491

BSNT_05457___    492 CTATTATGTGCCGAGCGGAACGCTGCATGCATTGTGCAAGGGGGCCCTTG    541
                     .||||||||||||||.||.||..|.|||||..|||||.|.||..|.||||
BPUM_3235___p    492 TTATTATGTGCCGAGTGGTACCATTCATGCGCTGTGCGAAGGAACGCTTG    541

BSNT_05457___    542 TTTTAGAGACTCAGCAAAATTCAGATGCCACATACCGGGTGTACGATTAT    591
                     |..|.||.||.|||||||..||||||.|.||.||.||.||.||.||||||
BPUM_3235___p    542 TCCTCGAAACGCAGCAAAGCTCAGATACAACCTATCGAGTATATGATTAT    591

BSNT_05457___    592 GACCGGGTTGATGACAACGGGAAGCCAAGA----GAGCTTCATTTTGCCA    637
                     ||.||....|||.|.||.|    ||||.||    ||.|||||||||||..
BPUM_3235___p    592 GAACGAAAAGATCAGAATG----GCCATGAACGTGAACTTCATTTTGCGC    637

BSNT_05457___    638 AAGCGGTCAATGCCGCCACGGTTCCCCATGTGGACGGGTATATTGATGAA    687
                     ||||..|..|||.|.|.|||||.||.|||||.|||||.|||...||||||
BPUM_3235___p    638 AAGCCATTGATGTCACAACGGTCCCTCATGTAGACGGTTATGCAGATGAA    687

BSNT_05457___    688 TCGACCGAATCAAGAAAAGGAATAACCATTAAAACGTTTGTCCAAGGGGA    737
                     ||....|||.||.|....||..|.||||||..|||.|||||..|||..||
BPUM_3235___p    688 TCAGTTGAAACACGCCGTGGGCTGACCATTCGAACTTTTGTTGAAGCAGA    737

BSNT_05457___    738 ATATTTTTCGGTGTATAAATGGGACATCAATGGCGAAGCTGAAATG-GCT    786
                     .||||||||.||||||||||||||.||   ||...||||.|.|  | |||
BPUM_3235___p    738 GTATTTTTCTGTGTATAAATGGGAAAT---TGATCAAGCAGTA--GAGCT    782

BSNT_05457___    787 ----CAGGATGAATCC-TTTCTGATTTGCAGCGTGA-TAG-AAGGAAGCG    829
                         ||.||| .|||| |||.||.|.|||||.||.| ||| ..|||||.|
BPUM_3235___p    783 TTCGCAAGAT-TATCCGTTTTTGCTGTGCAGTGTAATTAGCGGGGAAGGG    831

BSNT_05457___    830 GTTTGCTGATGTATGAGAGAGAAACATGTCCGCTCAAAAAAGGCGATCAC    879
                     |.|  ||.|.|.||||..|..|.||||.|||.||....|||||.|.|||.
BPUM_3235___p    832 GCT--CTAACGCATGATGGGCATACATATCCACTGCCTAAAGGAGCTCAT    879

BSNT_05457___    880 TTTATTATGCCGGCTCAAA-----TGCCCGATTTTACGATAAAAGGAACT    924
                     |||||..||||||||.|||     .||     ||..|.||..||||||.|
BPUM_3235___p    880 TTTATCCTGCCGGCTGAAACAGGGAGC-----TTCTCAATTGAAGGAAAT    924

BSNT_05457___    925 TGTACCCTTATCGTGTCTCATATTTAA    951
                     |||...||.||.||.||.|||||.|||
BPUM_3235___p    925 TGTGAACTGATTGTATCGCATATATAA    951


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05457 and BPUM_3235

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
