Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05454 and BPUM_3231

See Amino acid alignment / Visit BSNT_05454 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:04
# Commandline: needle
#    -asequence dna-align/BSNT_05454___tagA.1.24716.seq
#    -bsequence dna-align/BPUM_3231___tagA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05454___tagA-BPUM_3231___tagA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05454___tagA-BPUM_3231___tagA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05454___tagA
# 2: BPUM_3231___tagA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity:     515/837 (61.5%)
# Similarity:   515/837 (61.5%)
# Gaps:         120/837 (14.3%)
# Score: 1339.0
# 
#
#=======================================

BSNT_05454___      1 ATGCTGCAAACGGAAACGGT-TCATCATCTTGCATATGTTAACGGGGATT     49
                        .|||||||.|||..||| || |.|.|||.|.|||||.|||||.||  
BPUM_3231___t      1 ---ATGCAAACAGAAGTGGTCTC-TAACCTTTCTTATGTAAACGGCGA--     44

BSNT_05454___     50 TGCCC-----GGATTTTTGAGTCATCTTGAAGAATC--------CTTTAT     86
                        ||     |.||||.|.|||.||    |.|||||        .|||.|
BPUM_3231___t     45 ---CCTAGATGAATTTATTAGTTAT----ATGAATCACCATCATATTTCT     87

BSNT_05454___     87 CGACCGCA-ATGAGGGGGCATTTATCGCAACGGTAAACCCTGAGATCGGG    135
                     |.|    | |.||||.|.|| |.||.||.||.||.||.||.|||||.||.
BPUM_3231___t     88 CAA----AGAAGAGGCGCCA-TGATTGCGACAGTCAATCCAGAGATTGGC    132

BSNT_05454___    136 TATGCGGCTGCAAAAGACAAGGGTTATTTTAAAACAGTTTCATCTGCTGA    185
                     |||||.|.|...||.||..|.|..|||..|.||...||.||.|||||.||
BPUM_3231___t    133 TATGCTGTTATGAAGGATGATGCGTATCATCAAGTTGTCTCTTCTGCGGA    182

BSNT_05454___    186 CTTTATCCTGCCTGACGGAATCGGCATCGTCCTGACGTCAAGGCTGA-TC    234
                     .|.|.|.|||||.||.||..|.|||.|.|||.|||.||||.|..||| .|
BPUM_3231___t    183 TTATGTTCTGCCGGATGGTGTAGGCGTTGTCTTGATGTCACGTTTGACAC    232

BSNT_05454___    235 AA---CAGCAGATTAAAATCGAGGATCGCGGGGTACGATGTATTTATCAA    281
                     ||   |.||    |.||.||.||.||.||.||.|..|||||.||.||   
BPUM_3231___t    233 AAAGTCCGC----TGAAGTCAAGAATTGCTGGCTTTGATGTCTTCAT---    275

BSNT_05454___    282 CCTTCTCGGCCTGGCTGACC--GCAAA-AAG------AAAAGGGTATTTT    322
                       .|||    .||..|||.|  ||||| |||      |||||..|.||||
BPUM_3231___t    276 --GTCT----ATGCTTGATCTAGCAAACAAGCAGTCTAAAAGTATCTTTT    319

BSNT_05454___    323 TATACGGGGCCAAACAAGAGATTATTCAAGCTGTTGCAGATCGGCTTTCA    372
                     ||||.||.||.|||.||||..|..||.|.||||||..|.|.||..||...
BPUM_3231___t    320 TATATGGAGCAAAAAAAGAAGTGCTTGAGGCTGTTAAACAGCGAATTGAT    369

BSNT_05454___    373 ACCGAATATCCCGGAATTGAG---CTAGCCGGATACTCGCACGGCTATGT    419
                     ||.||||||||   ||.||.|   .|.||.||...||...|||||||  |
BPUM_3231___t    370 ACGGAATATCC---AAATGTGGTCATTGCAGGCAGCTGTGACGGCTA--T    414

BSNT_05454___    420 CAA--AGACAAAGACG--AAGTTGCGAAGCAAATCGC-GGCTGCCAAGCC    464
                     |||  .||.||  |||  ..||.||.||.|||||||| .|||...|||||
BPUM_3231___t    415 CAAGCCGATAA--ACGTTTCGTAGCAAAACAAATCGCTCGCTCGAAAGCC    462

BSNT_05454___    465 TGACATGGTTTTTGTGGCTCTCGGATATCCTCATCAGGAGAAGTTTATTT    514
                      ||.|||||.||.||.|||.|.||.|||||..||||||||||.|||||||
BPUM_3231___t    463 -GATATGGTATTCGTTGCTTTAGGTTATCCAAATCAGGAGAACTTTATTT    511

BSNT_05454___    515 ATGAACATAAGCATCTATTTCCTCAGGC-GATTGCGATCGGCATCGGCGG    563
                     |||||.|....|||.||||.||.||||| |.|||| |||||..|.|||||
BPUM_3231___t    512 ATGAATACCGTCATTTATTCCCGCAGGCTGTTTGC-ATCGGTTTAGGCGG    560

BSNT_05454___    564 GAGCTTCGACGTTTTCAGCGGAAAAGTGAAAAGAGCGCCGAAAATAT---    610
                     .|||||.||.||.||.|||||||..|||||..|.||.||   |..||   
BPUM_3231___t    561 AAGCTTTGATGTATTTAGCGGAACGGTGAAGCGTGCACC---ACGATGGA    607

BSNT_05454___    611 TCATTAAGCTTAATCTTGAATGGATGTACCGCCTGCTAACCAATCCGACA    660
                     |.|||||....|||...||||||.|||||.|.||..|....|||||....
BPUM_3231___t    608 TGATTAAAACAAATACAGAATGGCTGTACAGACTTGTTGTGAATCCATGG    657

BSNT_05454___    661 AGGTGGAAGCGGATGCTGAACATCCCGAAATATGTCTTTT-CCGTTCTGA    709
                     ||.|||||.||.||||||||.||.||.||.||.| ||||| ||||..|||
BPUM_3231___t    658 AGATGGAAACGAATGCTGAATATTCCTAAGTACG-CTTTTGCCGTGTTGA    706

BSNT_05454___    710 AAGAGGAAAGAGTTCAA----AAACAGCGGCACTACTATCCGGAGCA---    752
                     ||||  |||     |||    |||.|.||   .||||||||.|||||   
BPUM_3231___t    707 AAGA--AAA-----CAAAGGGAAAAAACG---TTACTATCCTGAGCAAGT    746

BSNT_05454___    753 ----GATCA-AAGAA-CAATCTAAAATCGATGTGTAG    783
                         ||||| |.||| ||          |.||||.  
BPUM_3231___t    747 AAAGGATCAGACGAAGCA----------GCTGTGA--    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05454 and BPUM_3231

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
