Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02005 and BPUM_3229
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_02005.1.24716.seq
# -bsequence dna-align/BPUM_3229___tagE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02005-BPUM_3229___tagE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02005-BPUM_3229___tagE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02005
# 2: BPUM_3229___tagE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2219
# Identity: 754/2219 (34.0%)
# Similarity: 754/2219 (34.0%)
# Gaps: 1273/2219 (57.4%)
# Score: 1306.5
#
#
#=======================================
BSNT_02005 0 -------------------------------------------------- 0
BPUM_3229___t 1 TTGGACAACAATGAAAGGTTGAGTGTTTTGATCCAAACATGGTTTAACAA 50
BSNT_02005 0 -------------------------------------------------- 0
BPUM_3229___t 51 GCTTAGAAAAAAGACACATGAAGATAATCAAAGTCAGCCGCAACAACAAT 100
BSNT_02005 0 -------------------------------------------------- 0
BPUM_3229___t 101 TGCAAATTCCTGATATGGAGTATTACTTTATTACTGGAAGAATTAAAGAA 150
BSNT_02005 0 -------------------------------------------------- 0
BPUM_3229___t 151 AAATATGGTGGTATGACGAAGTCGTTATTACTACGTGCGAACTTATTTGG 200
BSNT_02005 0 -------------------------------------------------- 0
BPUM_3229___t 201 ATTAAAGAATATTTCAACCCATTTTTTAACCTTTTCATATGATCAAGAAT 250
BSNT_02005 0 -------------------------------------------------- 0
BPUM_3229___t 251 TTTCTCAGAAAGTGAAAGGGATCTTTGACAAGCAAATAGTCGATCCTAAC 300
BSNT_02005 0 -------------------------------------------------- 0
BPUM_3229___t 301 GTGACGAAAATCCAAAATATGTATGAAGATTTCCTTATTCCAAATTGTTC 350
BSNT_02005 0 -------------------------------------------------- 0
BPUM_3229___t 351 ACCAAAGGAACAGTATCAGCCAACTTATCACGCTGGCAACAATAAAGGGT 400
BSNT_02005 1 ---------ATG-AGA--CTTAAGTTCAT-TGATTACCGTGACCTTAATC 37
||| ||| |.|..||||.| |||||| ||..|.||..
BPUM_3229___t 401 CATTTGATCATGAAGATCCATCGGTTCGTATGATTA----GAAATGAAAA 446
BSNT_02005 38 TTCAA--CGTACTCATAGAGTTGAATA---TGATCTTAATGGCAGAAA-- 80
.|||| |..|.|.|.|.||||||.|| |.|||..||| |||.||
BPUM_3229___t 447 ATCAAATCAAATTGAGATAGTTGATTATTTTCATCCAAAT--CAGCAATT 494
BSNT_02005 81 -AAGACGTGAGATTATATATAATCTTCAGAACAACAAGCCC----GC--- 122
.|||.|.||||..| |||||| ||.| ||||..| ||
BPUM_3229___t 495 GGAGAAGCGAGAGGA-ATATAA-CTCC-------CAAGGGCAGTTGCATA 535
BSNT_02005 123 --GTTT--------------GAA------AAATACTAT---GA------C 141
|||| ||| |||..|||| || |
BPUM_3229___t 536 AAGTTTCCTATTTCTCTCAGGAAACGGGCAAAGTCTATCGAGAACTATTC 585
BSNT_02005 142 ATTAATGGAA--ATTGTTATTTATCTGTTTGGGTAAA------------- 176
|||.|||.|| |.|..|||||||.|| |||
BPUM_3229___t 586 ATTTATGAAAACACTCATATTTATATG-------AAAAAAGGATATGCTG 628
BSNT_02005 177 CTCTTCAGG--GAAACGAACAAAGT--------------------GTGTT 204
.||||.|.| |||.|.| ||||| ||.||
BPUM_3229___t 629 ATCTTAAAGAAGAAGCTA--AAAGTAAATTGAGAGACATCATTTGGTATT 676
BSNT_02005 205 C--------------------TTCATGCTG-----GAATTA--ACAA--- 224
| ||.|...|| |||||| ||||
BPUM_3229___t 677 CCGAAGAAGGGATAAAAACCTTTAAAAATGAAAAAGAATTAAGACAAGAG 726
BSNT_02005 225 -GGC--------ATTCAATCATATAACTGAT--GCACACG-TCTATTGGG 262
||| |||||.| |||.||.|||| |.|.|.| |||.||..|
BPUM_3229___t 727 TGGCTTACAACTATTCAGT-ATAAAAATGATCGGAAAAAGCTCTTTTTAG 775
BSNT_02005 263 TTGA----------------------GTCTATCC--------TAAAGGAT 282
|||| ||.| ||| .||||||.
BPUM_3229___t 776 TTGATAGCCGGAAGCAGGATAAGTATGTGT-TCCAATTGAAAAAAAGGAG 824
BSNT_02005 283 T--------------------------------ACAC------------- 287
| ||||
BPUM_3229___t 825 TTCATCTTATTTCTCAGCAATCATTCACAGTAAACACTATGAAAGAGAAA 874
BSNT_02005 288 -----GAA------TCCGTTTTTAATGCTGGATGAATTAGGTTT------ 320
||| ||.|.||.|| |||||||| |||
BPUM_3229___t 875 AGACGGAATTACGTTCTGATTATA-------ATGAATTA--TTTACTCAA 915
BSNT_02005 321 --------------ATTAGATG-------TTTT----CCGCAAG------ 339
|.|||||| |||| |.| |||
BPUM_3229___t 916 GTAAGAAAACAAAAAGTAGATGCCGTCTTTTTTATCACTG-AAGAGCAAA 964
BSNT_02005 340 --------GTAG-GAAACGATT--GTCA-CAAAA--------TTGTAACA 369
|||| |||||.||| |||| ||||| ||.|||||
BPUM_3229___t 965 AAACAGACGTAGTGAAACAATTTGGTCATCAAAATATATTCTTTTTAACA 1014
BSNT_02005 370 CTACATAATACACATCTTGATAAACCGCACGT---------TAAAGGGTC 410
|.|||| |||| ||.|.||..||| ||.|.|.||
BPUM_3229___t 1015 CCACAT-----ACAT-----TAGATCGTTCGTCGCATCAAGTACAAGATC 1054
BSNT_02005 411 TCCATA---CAGACGCG-----TGTACAAA-------GAGATATTTGACC 445
.|.||| |.||..|| .||||..| |||| ||||||
BPUM_3229___t 1055 ACTATACTGCTGATCCGAATAAGGTACTGATGATGGCGAGA---TTGACC 1101
BSNT_02005 446 ACAAAGACGAAT----TCGATG-----CGATTGTTT-------------- 472
|.||..|..||| |.|||| ||.|.||||
BPUM_3229___t 1102 AAAATAAAAAATGTCATAGATGCCATACGTTCGTTTGAATTTGTGATAAA 1151
BSNT_02005 473 --------------------------TCTT---------AACT---GAAG 484
|||| |.|| |||.
BPUM_3229___t 1152 GGAAGTACCGAATGCAAGGCTTGAAATCTTTGGTTCAGGACCTCAAGAAA 1201
BSNT_02005 485 AGCA---AAAAAGAGATGTTGAGGAAGATTA------CGGAACGGATG-- 523
|||| ||||..|||..||.| ||||||| .|||| ..|||
BPUM_3229___t 1202 AGCAACTAAAACAAGAAATTAA--AAGATTAGACTTGGGGAA-TAATGTC 1248
BSNT_02005 524 --------AGCGATTTGTTGTAATTCCTCATGCTGTTACTCTAGATAAAG 565
|| ||||...|..||.||||.|||||| |.|.|||| |.||
BPUM_3229___t 1249 TTCTTGAAAG-GATTCACTCAAAATCCTGATGCTG--AATTTAGA-ACAG 1294
BSNT_02005 566 GCGCGATATTAGA-----------TAAGTCTA---TTGAACGAAACCC-- 599
.|||| ||..|||| |||||.|...|||
BPUM_3229___t 1295 --------CTAGAATGTCCCTTTCTACCTCTATTTTTGAAGGCTGCCCAT 1336
BSNT_02005 600 --------------TAAATCGGCCATAACA-------------------- 615
|.||||| .|||||
BPUM_3229___t 1337 TGTCAATCATGGAATCAATCG---TTAACAATTGCCCTGTGATTACCTAT 1383
BSNT_02005 616 ----------------CTAGCTCGCTTG-GA--------------GGA-- 632
|||||.|||||| || |||
BPUM_3229___t 1384 AATTACGATTATGGTGCTAGCACGCTTGTGAAAAATCAGTTTAATGGATT 1433
BSNT_02005 633 ----------CAGT--------AAAAATATTGCGGACGGAATTCGTGCTT 664
|||| |||.|..|.||..||..||| |.|
BPUM_3229___t 1434 TGTTGTTGAGCAGTATGAAGTGAAACAGTTAGCTAACAAAAT-----CAT 1478
BSNT_02005 665 TCCGTATTGTGGTCGACGAAATTAAAGACGCCGAGTATCATATCTTTGGT 714
| |.||||| .|||| ||.||.|...|||||||.||.||| |
BPUM_3229___t 1479 T--GAATTGT------TGAAA--AATGATGAACAGTATCAGATTTTT--T 1516
BSNT_02005 715 TATGGAAAA-------GAGA------AGGAAAATTTACAAGCGTTGATAA 751
.| ||||| |||| |||.|.||| ||| ||...||
BPUM_3229___t 1517 CA--GAAAATTGTCAGGAGACTGCAGAGGTATATT--CAA---TTCCCAA 1559
BSNT_02005 752 AGGATCTGCATTTAGAAA-----ATAACG----TTCATATACATGGGTTT 792
|| |||..|||| |.|||| |||||| |.|||
BPUM_3229___t 1560 -----CT--ATTATGAAAACTGGACAACGGCACTTCATA-AAATG----- 1596
BSNT_02005 793 ACTCATA-ACGT------TAATAGAG---AAATTCAAAAACACGGGCTGT 832
||| |.|| .||.|||| |||||||||||
BPUM_3229___t 1597 ----ATAGAAGTGCGAGAAAAAAGAGACCAAATTCAAAAA---------- 1632
BSNT_02005 833 CTATTATGACATCTCGATTCGAAGGATTCTGCTTAGTAATTA-TGGAAA- 880
||.||||..||| |||| ||| ||| ||||| |||.||
BPUM_3229___t 1633 --ATGATGAAGTCT--ATTC-----ATT----TTA--AATTAGTGGGAAT 1667
BSNT_02005 881 ----GTCTAGCCAATCAAACGC---CCGTAGTGAGTTACAGAACGAAGTA 923
||..|.| ||||.|..| ||.| .||.||.||.|..|||
BPUM_3229___t 1668 TGATGTTGAAC--ATCATATTCTTTCCTT--GGATTTGCACATAGAA--- 1710
BSNT_02005 924 CGGTCC---GGAAACACTCATTAGAGATGGGAAAGATGGGTACTTAGTAG 970
|||.| .||||.|| ||||.|.||.|| ||.|||
BPUM_3229___t 1711 -GGTGCTATTGAAAAAC-------------GAAAAAAGGTTA--TATTAG 1744
BSNT_02005 971 AA---------TAT------AATAACTATG-------------------- 985
|| ||| .|||||.|||
BPUM_3229___t 1745 AACTTGTCGGTTATGATCGGCATAACCATGCCGAGTTATTCTCTAAAAAA 1794
BSNT_02005 986 ------------AAG-------------------------------AAGC 992
||| ||||
BPUM_3229___t 1795 ATCGAAAATTTAAAGGTCTCCTTTCCAATTGGACATGCATCCATACAAGC 1844
BSNT_02005 993 TGCA--GAAA---AAGTGATCGAATT-------------------AATGA 1018
|||| |||| ||...|.||||.| |||||
BPUM_3229___t 1845 TGCATTGAAACGGAACAAAACGAAATATGTTGATTTCTATATTAGAATGA 1894
BSNT_02005 1019 AAGACAGTAAGCTGCAGA--------AAAA--------GTTTGCCA---- 1048
.|||| ||||| |||| ||||.|||
BPUM_3229___t 1895 GAGAC--------GCAGAATACAATGAAAACATTAAGCGTTTACCAATTG 1936
BSNT_02005 1049 ------------------AAAATTCGTTAGATGTATACAAACGATTTA-- 1078
|||| |||||||| ||||.| ||.|
BPUM_3229___t 1937 CCGAGCATCTGCTCAATGAAAA------AGATGTAT-CAAAAG-TTGACG 1978
BSNT_02005 1079 GTTATGCTCGCTATAAGAAGAACT---GGCTCGACTTATTTAAACAGCTT 1125
||..|.|| |||||| |.||.| || ||.||||| |||
BPUM_3229___t 1979 GTGTTTCT---TATAAG-ACAATTAAAGG---GAATTATT-------CTT 2014
BSNT_02005 1126 TCG----------AAATAA 1134
| ||||||
BPUM_3229___t 2015 --GGAAGGTGAATAAATAA 2031
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