Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05447 and BPUM_3220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:04
# Commandline: needle
# -asequence dna-align/BSNT_05447.1.24716.seq
# -bsequence dna-align/BPUM_3220___tagH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05447-BPUM_3220___tagH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05447-BPUM_3220___tagH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05447
# 2: BPUM_3220___tagH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1631
# Identity: 701/1631 (43.0%)
# Similarity: 701/1631 (43.0%)
# Gaps: 748/1631 (45.9%)
# Score: 2525.0
#
#
#=======================================
BSNT_05447 1 ATGAAACTAAAAGTTTCGTTTCGAAATGTTTCAAAACAGTATCAG-CTT- 48
|||||||||||.||||||||||||||.||.||.||.||.||| | |||
BPUM_3220___t 1 ATGAAACTAAAGGTTTCGTTTCGAAACGTATCCAAGCAATAT--GTCTTA 48
BSNT_05447 49 TATGAAAAACAATCGGATAAAATTAAAGGGCTGTTTTTTCCGAAT---AA 95
|||.||||.||.|||||.||.||.|||||.||||||||.||.||| ||
BPUM_3220___t 49 TATAAAAAGCAGTCGGACAAGATCAAAGGACTGTTTTTACCCAATAAAAA 98
BSNT_05447 96 GGATAAAAGTTTTTTTGCTGTTCGGAATGTCTCCTTTGACGTGTACGAAG 145
.||.|||.||||.|||||||||||..||||.||||||||.||.||.||||
BPUM_3220___t 99 TGAAAAAGGTTTCTTTGCTGTTCGTGATGTATCCTTTGATGTATATGAAG 148
BSNT_05447 146 GGGAGACGATCGGATTTGTGGGGATTAATGGATCGGGAAAATCGACGATG 195
|.|||||.||.||.|||||.|||||.||.|||||.|||||||||||.|||
BPUM_3220___t 149 GTGAGACAATTGGTTTTGTAGGGATCAACGGATCTGGAAAATCGACAATG 198
BSNT_05447 196 TCCAACCTGCTGGCAAAAATCATTCCGCCGACAAGCGGTGAAATTGAAAT 245
||.|||||.||.||||||||.|||||.||.|||||.|||||||||||.||
BPUM_3220___t 199 TCAAACCTTCTAGCAAAAATTATTCCACCCACAAGTGGTGAAATTGATAT 248
BSNT_05447 246 GAACGGGCAACCTTCCCTGATTGCGATTTCCGCAGGATTAAACAATGCGC 295
|.|.||.||.|||||..|.|||||.|||.|.|||||..|.||||||..|.
BPUM_3220___t 249 GGATGGCCAGCCTTCGTTAATTGCCATTGCGGCAGGGCTGAACAATCAGT 298
BSNT_05447 296 TGA-CGGGCAGAGATAACATTCGTCTCAAGTGTTTAATGATGGGTCTCAC 344
||| |||| |.|||.|||||||||||.|||||.||.||||||||.||.||
BPUM_3220___t 299 TGAGCGGG-AAAGACAACATTCGTCTTAAGTGCTTGATGATGGGGCTAAC 347
BSNT_05447 345 AAATAAAGAAATTGATGAGATGTATGACAGCATCGTTGAATTTGCTGAAA 394
.||||||||.||.||||||.|.|||||.|..|||||.||.|||||.||.|
BPUM_3220___t 348 GAATAAAGAGATAGATGAGCTTTATGAAAAAATCGTAGAGTTTGCGGATA 397
BSNT_05447 395 TCGGCGAGTTTATCAATCAGCCGGTCAAAAGCTATTCCAGCGGAATGAAG 444
||||.||.|||||..||||.||.||.||.||||||||.|||||.|||||.
BPUM_3220___t 398 TCGGTGATTTTATTGATCAACCCGTGAAGAGCTATTCAAGCGGGATGAAA 447
BSNT_05447 445 TCCCGGCTTGGCTTTGCGATCTCAGTGCATATTGATCCCGATATTTTAAT 494
||.||.||||||||.||.||.||||.||||||.|||||.|||||.||.||
BPUM_3220___t 448 TCACGTCTTGGCTTCGCCATTTCAGCGCATATCGATCCAGATATCTTGAT 497
BSNT_05447 495 TATTGACGAAGCGTTATCAGTAGGTGATCAAACCTTCTATGATAAATGTG 544
||||||.||||||||.||.||.|||||.||||||||||||.|.|||||.|
BPUM_3220___t 498 TATTGATGAAGCGTTGTCTGTTGGTGACCAAACCTTCTATCAAAAATGCG 547
BSNT_05447 545 TCGACAGAATTACCGAGTTTAAAAATCAAGGGAAAACCATTTTCTTTGTC 594
|.||..|.||.||.||.||.|||.|.||||||||.||.||.||.||||||
BPUM_3220___t 548 TGGATCGTATCACAGAATTCAAAGAACAAGGGAAGACAATCTTTTTTGTC 597
BSNT_05447 595 AGCCATTCAATTGGTCAAATCGAGAAAATTTGCGATCGGGTCGCCTGGAT 644
||||||||.|||.|||||||..|.|||||.||.|||||.|||||.|||||
BPUM_3220___t 598 AGCCATTCCATTAGTCAAATTCAAAAAATCTGTGATCGAGTCGCTTGGAT 647
BSNT_05447 645 CGATAATGGCGAGCTTCGAATGTTTGATGATACAAAGACGGTCGTAAAGG 694
..||.||||.||||||||.||||||||||||||.||||..||.|||||.|
BPUM_3220___t 648 GCATTATGGTGAGCTTCGTATGTTTGATGATACGAAGAAAGTTGTAAAAG 697
BSNT_05447 695 AATATAAAGAATTTATCAGCTGGTTTAAAAAGCTTTCCATAAAAGAGAAA 744
|.|||||.||.|||.|...|||||||||.||||||||||.||||||||||
BPUM_3220___t 698 AGTATAAGGAGTTTGTTGACTGGTTTAACAAGCTTTCCAAAAAAGAGAAA 747
BSNT_05447 745 GACAAATATAAAAAAGAGCAATTAGCAAGTCGCAAAAAGGTTTTGTCCGA 794
.|.|||||..|||..||.||...||.|.||.| |||||| .||.|
BPUM_3220___t 748 CAAAAATACCAAATGGAACACAAAGAAGGTAG--AAAAGG---CGTAC-- 790
BSNT_05447 795 AGAAGATCTAGCTCATCCTGAAAAAG----------AAAAGAAA-----A 829
|.||||| .||||||| .||||||| |
BPUM_3220___t 791 AAAAGAT-----------GGAAAAAGTGACTCGTTATAAAGAAAGTGGGA 829
BSNT_05447 830 AACAA----AAATCTTTGG----------CAA------ATATCATTCCGA 859
|||.| .|.|.||||| ||| ||| |
BPUM_3220___t 830 AACGACGTTCATTTTTTGGGCCAGCCTTTCAAGTGACGATA--------A 871
BSNT_05447 860 TTGCAGGTTTATCCAT----CCTGC-------------TCGTATTGGCCG 892
|.||.|.||||.|||| |.||| ||..||.|||||
BPUM_3220___t 872 TAGCTGTTTTAACCATTTTACTTGCCTTATCGATGTTTTCAGATCGGCCG 921
BSNT_05447 893 C--CGGA-----GCGATGTTT-----------GTTTAA------------ 912
| ||.| ||.|.|||| ||.|||
BPUM_3220___t 922 CTTCGTACACTGGCCACGTTTGGTGCAATTCCGTCTAATAAGACAGAAGC 971
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 972 ACCTCAATCAAAGAACCCGCTAACGAAGGGGGCTCCTGATATGAAAAAGG 1021
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1022 TGGATCAACAGACGATTGTTACAGCAGATCCACTTACGGTGTACAAAGAT 1071
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1072 CAAGCTATGAAAAAGAAGGCAGATGTCACTTTGCCATTTGGTCAAGAGGT 1121
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1122 ACAAGCAGTCGCTGAAAATAAACAAACCGTTCAAATCAAAACAGCATCAG 1171
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1172 AGACGTATTTTGTCAAACCTGATGGGCTTCAACATGCTGAGGAATTAAAG 1221
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1222 GCTTTATCCATTGGACCTGGACAGTTCAACTCGTATGTATCGCCCGCATC 1271
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1272 TGCTGGCTCGTATGAGTATTTACTTTCTTTCCTTGGAAAAGAAGAATCTG 1321
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1322 TGTTGAAGCAAAAAATGCAAACGCTGAGCTCGATCAAAAGTGAACAAGGT 1371
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1372 GCTACTATTGAGCGGCTGACCACTGAGAAAACCGATTATGTGATTGAAAA 1421
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1422 TGGACAGGCGAATACGTTGGTATTCCGTGAGGTCATGCCAATCTCGCCAT 1471
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1472 CTACACTTGGTCTCACAGAACAGAACGTTTGGTTGAATGAGAAACAAACG 1521
BSNT_05447 912 -------------------------------------------------- 912
BPUM_3220___t 1522 AAATTCGCAGTGAAGGGCGAAAAGAACTTGTTTATCATTGATAATGAACA 1571
BSNT_05447 912 ------------------------------- 912
BPUM_3220___t 1572 GCATACACTGACGATCTCAGTGATCAAATAA 1602
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