Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05437 and BPUM_3218

See Amino acid alignment / Visit BSNT_05437 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:03
# Commandline: needle
#    -asequence dna-align/BSNT_05437.1.24716.seq
#    -bsequence dna-align/BPUM_3218___mnaA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05437-BPUM_3218___mnaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05437-BPUM_3218___mnaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05437
# 2: BPUM_3218___mnaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1171
# Identity:     708/1171 (60.5%)
# Similarity:   708/1171 (60.5%)
# Gaps:         215/1171 (18.4%)
# Score: 2307.5
# 
#
#=======================================

BSNT_05437         1 ATGAAGAAACTAAAAGTCATGACAGTATTCGGCACGCGCCCTGAAGCCAT     50
                     .||||.||||||||.||.|||||..|.|||||.||..|.||||||||.||
BPUM_3218___m      1 GTGAAAAAACTAAATGTAATGACTATTTTCGGTACTAGACCTGAAGCGAT     50

BSNT_05437        51 AAAAATGGCGCCGCTCGTACTTGAATTAAGAAAATATCCTC----AAATT     96
                     .||||||||.||.||.||.||||||||||..|||.||||.|    |||||
BPUM_3218___m     51 CAAAATGGCACCACTTGTCCTTGAATTAAATAAACATCCACAGATAAATT    100

BSNT_05437        97 GAGTCTTATGTGACGGTTACAGCCCAACATAGGCAAATGCTTGACCAGGT    146
                     .|.|    |||.||.||.|||||||||||.||..||||||||||.||.||
BPUM_3218___m    101 CAAT----TGTTACTGTGACAGCCCAACACAGAGAAATGCTTGATCAAGT    146

BSNT_05437       147 ACTTGAAGC-TTTTGACTTAAAGCCTGATTTTGATTTGAATATCATGAAA    195
                     .|||||.|| ||||.|.|| |.|||.|||..||||||.||.|||||||||
BPUM_3218___m    147 TCTTGAGGCTTTTTCAATT-ACGCCAGATCATGATTTAAACATCATGAAA    195

BSNT_05437       196 GAAAGGCAAACGCTGGCTGAAATTACGTCTAATGCGCTTATGAAGCTAGA    245
                     .|..|.||.||..|..||||||||||.||.|||||.||..|.||||||||
BPUM_3218___m    196 CAGCGCCAGACATTATCTGAAATTACATCAAATGCACTGTTAAAGCTAGA    245

BSNT_05437       246 CGAGCTGTTTCAGTCCATC---------AAACCGGACATTGTGCTTGTTC    286
                              |||.|...||         |||||.||.|||||.||.||.|
BPUM_3218___m    246 ---------TCAATTATTCCAAGAAGAAAAACCTGATATTGTCCTGGTCC    286

BSNT_05437       287 ACGGCGATACGACAACGACATTTGCGGGTAGTCTT-GCTGCTTATTATCA    335
                     |.||.|||||.||||||||.|||||.||.|| ||| ||.||.|.||||||
BPUM_3218___m    287 ATGGGGATACAACAACGACCTTTGCAGGAAG-CTTGGCAGCATTTTATCA    335

BSNT_05437       336 CCAGATTTCCGTCGGCCATGTAGAGGCGGGACTTAGAACCGGGAACAAAT    385
                     |||.|||||.|||||.||.||.||.||.|||.|.|||||....||.||||
BPUM_3218___m    336 CCAAATTTCAGTCGGTCACGTCGAAGCAGGATTGAGAACACACAATAAAT    385

BSNT_05437       386 ACTCGCCGTTTCCTGAAGAGCTGAACAGGCTGCTGACGGGATCGATTGCC    435
                     |.||||||||.||.||.||..||||..|.|...||||.||..|.||||||
BPUM_3218___m    386 ATTCGCCGTTCCCAGAGGAATTGAATCGTCAAATGACAGGTACTATTGCC    435

BSNT_05437       436 GATTTTCATTTTGCGCCGACAGAGCAGGCCGAA-AAGAA---TTTACTCC    481
                     |||.|||||||..|.||.||||||.|.| |||| .||||   ||||.|  
BPUM_3218___m    436 GATATTCATTTCTCTCCTACAGAGGAAG-CGAAGCAGAATCTTTTAAT--    482

BSNT_05437       482 ACGAAAATAAAGATCCGGAGACGATTTTCGTCACCGGAAATACCGCAATT    531
                      .|||||||||.|....|||||.|||||.||.||.||.|||||.||||||
BPUM_3218___m    483 -TGAAAATAAAAAAGAAGAGACCATTTTTGTGACAGGTAATACAGCAATT    531

BSNT_05437       532 GATGCACTTCGCACAACAGTAAGGGACGGC--TAT--GCACATCCCGTCC    577
                     ||.||.||.|..||||||||.|..||  ||  |||  ||||  ||..|..
BPUM_3218___m    532 GACGCCCTGCAAACAACAGTTACTGA--GCATTATCAGCAC--CCTATTT    577

BSNT_05437       578 TTGAAAAAATCGGAAGTGACAAGATGATTTTACTTACCGCACATCGGCGT    627
                     |.||||.|||.||||..||.||.|||.|.||..|.||.||||||||..|.
BPUM_3218___m    578 TAGAAAGAATAGGAACGGATAAAATGGTCTTGTTAACGGCACATCGCAGA    627

BSNT_05437       628 GAAAATTTAGGGAAGCCGATGGAAAACATGTTTAAAGCGATCAGGCGAAT    677
                     ||.|||.|.||..||||.|||.||||||||||||.|||.||.||.||..|
BPUM_3218___m    628 GAGAATCTCGGCCAGCCAATGAAAAACATGTTTAGAGCTATTAGACGTGT    677

BSNT_05437       678 CGTCGAAGAATTTGACGGCGTACAGGTCGTTTATCCCGTTCATCTCAATC    727
                     .||.|||||||||||.|..||.|||||.||||||||.||||||.|.||.|
BPUM_3218___m    678 TGTAGAAGAATTTGAAGATGTTCAGGTTGTTTATCCTGTTCATTTAAACC    727

BSNT_05437       728 CCGCTGTTCGTGAAGCGGCTGC--AAAGCACTT--CGGTGATTTGGATAA    773
                     |.||.||.|||||.|||||| |  |.||.|.||  ||||       .||.
BPUM_3218___m    728 CTGCCGTACGTGATGCGGCT-CAGACAGAATTTAGCGGT-------CTAG    769

BSNT_05437       774 A----GTCCATCTGTTAGAGCCGCTCGAAGTCATCGATTT-TACAACTTC    818
                     |    ||.||..|..|.||.|||||.||||||.|.||||| .|.|||||.
BPUM_3218___m    770 ACCGTGTACACTTAATTGAACCGCTTGAAGTCGTTGATTTCCATAACTTT    819

BSNT_05437       819 GCTGCTGAAGCTCACTTCATCCTCACCGACTCGGGTGGGGTGCAGGAAGA    868
                     |||||.|...|.|||||.||..|.||.||.||.||.||.||.||.|||||
BPUM_3218___m    820 GCTGCCGCTTCACACTTTATTTTAACGGATTCTGGCGGTGTACAAGAAGA    869

BSNT_05437       869 AGCGCCGTCGCTTGGAAAGCCGGTCCTCGTGCTTCGCGATACTACGGAAC    918
                     .||.||.||.||.||.|||||.||..|.|||||.||.|||||.||.||||
BPUM_3218___m    870 GGCACCTTCTCTAGGGAAGCCAGTATTAGTGCTCCGTGATACAACAGAAC    919

BSNT_05437       919 GGCCAGAAGGCGTTCGGGCCGGTACGCTTAAACTGGCAGGAACGGATGAA    968
                     |.|||||||||||....||.||.||.|||||.||.|||||.|||||||||
BPUM_3218___m    920 GTCCAGAAGGCGTGAAAGCTGGGACACTTAAGCTTGCAGGTACGGATGAA    969

BSNT_05437       969 GATAAGATCTATCAACTGA-------------------------------    987
                     ||.|..||.||..||.||.                               
BPUM_3218___m    970 GAGACCATTTACAAAATGGCAAAAGAGCTGCTAGTAGATCAGAAGGAATA   1019

BSNT_05437       987 --------------------------------------------------    987
                                                                       
BPUM_3218___m   1020 TGACAGCATGTCGAAGGCGTCTAATCCTTATGGTGACGGACAAGCATCGA   1069

BSNT_05437       987 --------------------------------------------------    987
                                                                       
BPUM_3218___m   1070 AACGAATTGTCCAAGAACTTCTTCATCGATTTGGATTAAGTGAAGAAAAA   1119

BSNT_05437       987 ---------------------    987
                                          
BPUM_3218___m   1120 CCTGTCCCATTCAAATCATAA   1140


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