Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05420 and BPUM_3209
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_05420___tuaC.1.24716.seq
# -bsequence dna-align/BPUM_3209___tuaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05420___tuaC-BPUM_3209___tuaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05420___tuaC-BPUM_3209___tuaC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05420___tuaC
# 2: BPUM_3209___tuaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1374
# Identity: 749/1374 (54.5%)
# Similarity: 749/1374 (54.5%)
# Gaps: 387/1374 (28.2%)
# Score: 1763.5
#
#
#=======================================
BSNT_05420___ 1 TTGAAGGTTCTTTGGATTACCAGTGTTTATCCAAGTAGTCAAAAA---CC 47
.|||||||.||.|||.|.||.|||||.||||| ||||.||||| ||
BPUM_3209___t 1 ATGAAGGTGCTATGGCTGACAAGTGTATATCC---TAGTGAAAAACATCC 47
BSNT_05420___ 48 GGGAGAAGGTGTTTTTCATGAAACACAGGTTCAGGCGTTGTATATGCAGG 97
..|.||||||||.||.||||||||.||.||.||||.|.||...|..||.|
BPUM_3209___t 48 AAGTGAAGGTGTATTCCATGAAACGCAAGTACAGGAGCTGCTCAAACAAG 97
BSNT_05420___ 98 GCGTTGATGTGACAGTCATATGTCCATTACCTGTGAACCCTGCTCCTCTG 147
|..|..|.|||||.|||||.|||||....||.||.||.||..|...|.||
BPUM_3209___t 98 GAATACAAGTGACCGTCATCTGTCCCAACCCAGTTAATCCACCGATTTTG 147
BSNT_05420___ 148 AGGCTGTTGAA----------------AAAAAAGTACCGCCAAACACGAA 181
.||.||.|||| |||||.|..|.||| ||||
BPUM_3209___t 148 CGGATGCTGAAGGCGTCCTATCGGCAGAAAAAGGATCTGCC-----CGAA 192
BSNT_05420___ 182 CAGTCCCGGAATATGAAGAAAGAAAAGGTATCCCGGTTTACAGACCACCA 231
|| |||| ||| |||||.||..|..|.||.|||||.||.||.
BPUM_3209___t 193 CA-----GGAA-ATG-----AGAAACGGAGTGACCGTATACAGGCCGCCC 231
BSNT_05420___ 232 TATACAGCTCTGCCGGGACAGCTAAAATGGGCTCAGC--------CGCAT 273
||||||||.||.||.||||||||.||||||||.|||| ||.||
BPUM_3209___t 232 TATACAGCACTCCCCGGACAGCTGAAATGGGCACAGCCGAGTAAACGAAT 281
BSNT_05420___ 274 CGC------------CGGATCGCAAAGTCAGTATTGAGGACGATCGAGAA 311
.|| ||| |||.|.| |||..|| ||
BPUM_3209___t 282 AGCGGCTTCTGTTCTCGG--CGCTATG-CAGCGTT-------AT------ 315
BSNT_05420___ 312 GTACAGCCTTG-CGCCGAATCTTATCCATGCCCATTTCGCGATGCCATCC 360
|||| || |.||..||.||||||||||.||.||.||.||||||||.
BPUM_3209___t 316 ---CAGC--TGTCACCAGATTTTATCCATGCGCACTTTGCAATGCCATCT 360
BSNT_05420___ 361 GGGGGTGCCGCTGCCGTTATT--GCACAGAGGCTGAAGGTTCCTTATGTT 408
||.||.||.||.||.||.||| |||.|.| ..|||..||||||||.||
BPUM_3209___t 361 GGCGGAGCAGCGGCTGTGATTCAGCAAAAA--ACGAAAATTCCTTATCTT 408
BSNT_05420___ 409 CTAACTTTGCACGGAAGCGATGTCAATATTTATCCTCATTACAGCAAAGG 458
.|.||.||.||.||.||.|||||.||..|.|||||....||.||.|||||
BPUM_3209___t 409 TTGACCTTACATGGCAGTGATGTGAACGTGTATCCGAGCTATAGTAAAGG 458
BSNT_05420___ 459 CGCTTTTCGAGCATTTGATATGGCTGTG---CATGCTGCAGCTAAAGTTT 505
.||.|.|..|||.|||||.|.|||.||| ||.||..|.|| ||||.
BPUM_3209___t 459 GGCATATGCAGCCTTTGAAACGGCGGTGAAACAGGCATCGGC---AGTTC 505
BSNT_05420___ 506 TGGCTGTCAGCGA------TGCTTTGAAAGCCAAAACAAAAGAAATGACC 549
||.|.||.||.|| |||| ||| ||.|||||.||.|||| |
BPUM_3209___t 506 TGACGGTGAGTGAAGAGCTTGCT---AAA---AAGACAAATGACATGA-C 548
BSNT_05420___ 550 G---------GTGC--TGATT---GCTCGGTGCTTCCTATCGGC-GTCAA 584
| |.|| ||..| ||||||| .||||..|| | |||
BPUM_3209___t 549 GAAAGTAGAAGCGCAATGCCTCCCGCTCGGT-ATTCCGCTC--CAGTC-- 593
BSNT_05420___ 585 CCTGGACAATTTTCAAAAAAACTCCG------CTTCAACACTTGAATTGA 628
||||||.|||| || ..||||||..|.| |.|
BPUM_3209___t 594 --------ATTTTCTAAAA-----CGGAAGAAGATCAACAAGTCA--TCA 628
BSNT_05420___ 629 GGGAGAAACTCGGCTTGCC----GACAGACAAAAAATTGCTGACG----- 669
||||.||..|.|||||.|| .|| ||||| ||| ||
BPUM_3209___t 629 GGGAAAAGTTAGGCTTACCCCTTCAC-GACAA------GCT--CGTTGTC 669
BSNT_05420___ 670 TTCGTCGGTCGCTTGGTGAAAG-GAAAGGGTGTAGCCGAGCTGGCTGAAG 718
||||||||.||.||.||.|||| ||||||.| ||..||||
BPUM_3209___t 670 TTCGTCGGCCGATTAGTCAAAGAGAAAGGTT----------TGCTTGAA- 708
BSNT_05420___ 719 CGGTCAGGTCGCTTGATGACAGCTACAGAGCTGTATTCATCGGCGATGGA 768
|.|| |||| ||||| |||..||| |||||
BPUM_3209___t 709 ---TTAG-----TTGA----AGCTA-----------TCAGTGGC-ATGGA 734
BSNT_05420___ 769 CCGGAG---AAGCAGCATATCCGT----CAAATCGCCGGTGAAAAAG--- 808
.||.| |||||| |.|..|| .||..|.||..||.|||||
BPUM_3209___t 735 -TGGTGTGAAAGCAG--TTTTTGTTGGAAAAGGCCCCCTTGCAAAAGAGC 781
BSNT_05420___ 809 ---CA--------------AT--ATTA-------ATGGGGCAGGT-CTCA 831
|| || |||| | |||||||| |
BPUM_3209___t 782 TCACAGAACGGGCTGGAGCATCCATTATACTCCCA--GGGCAGGTGC--- 826
BSNT_05420___ 832 AACCTTCAAAT-ATC---TGAA----TAT---CTGGCTGCCTCTGATCTG 870
|.||| ||| |||| ||| .||||..|| ||||||
BPUM_3209___t 827 ------CGAATGATCAGGTGAAAGACTATTTAATGGCAACC---GATCTG 867
BSNT_05420___ 871 TTTGTGCTCCCTTCGTATTCAGAAGGGATGCCGACTGTTGTCATTGAAGC 920
|||..|||.||.||.|||...|||||.|||||.||.||.||..|.||.||
BPUM_3209___t 868 TTTACGCTTCCGTCCTATAGTGAAGGAATGCCAACCGTCGTTCTGGAGGC 917
BSNT_05420___ 921 GCTCGCCCTCAAGGTTCCGGTGCTTTGTACGGCG------GTCGGAGGGG 964
||||||..|.||.||.||.||..|| ||| |||||.||..
BPUM_3209___t 918 GCTCGCTTTAAAAGTACCTGTCATT------GCGACAAGAGTCGGTGGTC 961
BSNT_05420___ 965 TTCCGTCTTTA--TTCGGAAAGC-ATGAACATCTGC----TGATCAAGCC 1007
||||..|.||| ||| .||| ||.||||.|||| ||||
BPUM_3209___t 962 TTCCAACCTTATTTTC---TAGCTATCAACACCTGCTCGTTGAT------ 1002
BSNT_05420___ 1008 CCGC--TCGGCTTCAAGCA--TTACAGAAGC--TGTCA------------ 1039
|||| ||||| .||.|| |.|.|||.|| | |||
BPUM_3209___t 1003 CCGCATTCGGC--AAATCAGTTAAAAGAGGCCAT-TCACGCCTACCTTTA 1049
BSNT_05420___ 1040 -------AGGGATATTTGGAAGTCGGCACTTG-GCAAG----AAGTCATT 1077
||| ||||| || ||||| |||
BPUM_3209___t 1050 TGAAAACAGG------TGGAA---------TGAGCAAGTAAAAAG----- 1079
BSNT_05420___ 1078 GCTGAAGAACTGTATCAAACGGTGCTCGAT---GATTATGACGCCTTTC- 1123
.||.||..||||||..||.| || ||.|| |||
BPUM_3209___t 1080 -----CGATCTACATCAAATCGTTC---ATACAGAATA--------TTCA 1113
BSNT_05420___ 1124 ----AAAATGCCGGCAAGTTGCT-------GGATGTGTATAAGGATGTT- 1161
|||||...|..|||..||| ..||.|| |.|||| ||.|
BPUM_3209___t 1114 TCAGAAAATAATGCGAAGCAGCTCATACAGCAATATG-AAAAGG-TGCTT 1161
BSNT_05420___ 1162 -----GTCAAGAACAA----TTAA 1176
.||||||.|.| ||||
BPUM_3209___t 1162 CATCAATCAAGATCCATCGTTTAA 1185
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