Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05415 and BPUM_3206

See Amino acid alignment / Visit BSNT_05415 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:02
# Commandline: needle
#    -asequence dna-align/BSNT_05415___tuaE.1.24716.seq
#    -bsequence dna-align/BPUM_3206.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05415___tuaE-BPUM_3206.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05415___tuaE-BPUM_3206.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05415___tuaE
# 2: BPUM_3206
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1590
# Identity:     981/1590 (61.7%)
# Similarity:   981/1590 (61.7%)
# Gaps:         267/1590 (16.8%)
# Score: 2624.5
# 
#
#=======================================

BSNT_05415___      1 ATGAGTCTCAAACGTTCCGC--GG----TCA-------ATGT-TCTGGTT     36
                     ||||||.|.||||...|.||  ||    |||       |||| |.|.|||
BPUM_3206          1 ATGAGTGTGAAACAAACAGCATGGCAAATCATGATTGGATGTATTTTGTT     50

BSNT_05415___     37 TGGCTCGCCGCATTGACCGCAGGG-TTAGCATGCATTGTATTGGCCCAAT     85
                     ||              |.|||||| ||.|   || |||||     |.|||
BPUM_3206         51 TG--------------CAGCAGGGATTGG---GC-TTGTA-----CAAAT     77

BSNT_05415___     86 ---------CCAATGC----------AAAAAAAATCTTGCTAGCATGT--    114
                              |||  ||          |||.||||   ||.|.|| |||  
BPUM_3206         78 GACATCCACCCA--GCCCGTTGGGTTAAAGAAAA---TGGTGGC-TGTTC    121

BSNT_05415___    115 -----CTAATTATGATTGCACTGACTTC-GATCGTTGTGCTCAGGAAGTA    158
                          .||.||.||||   .|||.||.| |.|| |.|||.|.|.||||| 
BPUM_3206        122 CGGTAATACTTCTGAT---CCTGGCTGCTGCTC-TCGTGTTGATGAAGT-    166

BSNT_05415___    159 TATGT-CAT-----CTGAGCAATTGCTAATGCCCG-TAT-TATATTTGCT    200
                       ||| |||     .|||||||.|..|.|||.|.| .|| |||.|||  |
BPUM_3206        167 --TGTACATGAATGGTGAGCAAATCTTCATGTCAGCCATCTATCTTT--T    212

BSNT_05415___    201 GATCGCTGCA---ACTTTTGCCAACAATGCTTTTTTTACGATTAAATTG-    246
                     ||   ||.||   ||.|||..||||||.|||||||||.|.|||  |.|| 
BPUM_3206        213 GA---CTACATTGACCTTTCTCAACAACGCTTTTTTTTCTATT--AGTGC    257

BSNT_05415___    247 -GGCTTTTTCAGCCTGTTTCCATATCGAATTCTTCTGATTCTGGCAG---    292
                      ||.||.||.|||||.||||..||.||.||..|.||.|   |.||.|   
BPUM_3206        258 TGGATTCTTTAGCCTTTTTCTCTACCGTATCATGCTCA---TCGCCGCCT    304

BSNT_05415___    293 --GATTCATATTCATA--GC-----AGAAATGTTGAAAGGCAGCCG-ACA    332
                       |.||  ||||||||  ||     |||      ||||.|..|.|| |||
BPUM_3206        305 TTGCTT--TATTCATATGGCGGATGAGA------GAAAAGGGGACGTACA    346

BSNT_05415___    333 CCT-TGAAAAGTGGAATCAGGTGCGTGTCAAAGGCATACTAATG--TTTT    379
                     ..| |.||   |||.|.|||.|.|||||||||||.||.||  ||  ||||
BPUM_3206        347 TATCTCAA---TGGCAGCAGATTCGTGTCAAAGGTATTCT--TGGTTTTT    391

BSNT_05415___    380 TCGCATTTTGG-TTCTGTTATGGAATGATTTCACTGCTTTGGGTCAAATC    428
                     ||.||...||| |||| |||.|||.|.||.|||||||||||||...|.||
BPUM_3206        392 TCTCAGCATGGTTTCT-TTACGGACTCATCTCACTGCTTTGGGCGCATTC    440

BSNT_05415___    429 TGTTACTGATGGCATAAAATATATGTTCCTATTGGCAATGGGAATGTTCT    478
                     .||.||.||.|||.|.||||||||||.|||..|.||||||||||||...|
BPUM_3206        441 AGTCACAGACGGCCTGAAATATATGTCCCTTCTTGCAATGGGAATGGGAT    490

BSNT_05415___    479 TCGTTTTTCTGATTGTCATGTTTTTTCAAAAATTGGATCGCATTTTCGCA    528
                     |.||.|||||..|.|||||||.|.||||...|.||||.|...|..|..|.
BPUM_3206        491 TTGTCTTTCTAGTCGTCATGTATATTCAGCGAATGGACCAAGTGGTGACC    540

BSNT_05415___    529 TTTTATTACATATGGCTGGTCATGACCGTATTTGTAATGGGGATAGGGTT    578
                     ||||||..|||.|||||.||.|||||.||.|||||.||||||||.|||||
BPUM_3206        541 TTTTATAGCATTTGGCTCGTGATGACTGTGTTTGTGATGGGGATTGGGTT    590

BSNT_05415___    579 TTACAATCACTTTACATTCAACCACCTGCCGAGCTCGACC-CTTTACAAC    627
                     .||.||||||||||||||.|||||..|.||||   ..||| |.|||.|.|
BPUM_3206        591 CTATAATCACTTTACATTGAACCATTTACCGA---ATACCTCATTATATC    637

BSNT_05415___    628 --GGGCC-GCACTATAAACAGCACTATCCGACATCCGTTTTTTTCAATCA    674
                       ||||| ||| |||||||||||||||||.|||||.||.|||||.|||||
BPUM_3206        638 TAGGGCCAGCA-TATAAACAGCACTATCCTACATCTGTCTTTTTTAATCA    686

BSNT_05415___    675 AAATGACTTTGCGACATTTCTGTCCATCAGCTTTTGCTTTTATTTA----    720
                     .|||||||||||.||.|||.|.||.||.||.||.|.|||.|||.||    
BPUM_3206        687 GAATGACTTTGCAACGTTTTTATCGATTAGTTTCTTCTTATATCTAGCGT    736

BSNT_05415___    721 TCTTTTTTCAAAAACATTAAAAACAGCTATTTAAAAATAGC---AGGATT    767
                     .|.|...||||    ||.||||||.|.|||.|.||   |||   .|||||
BPUM_3206        737 GCATGCGTCAA----ATGAAAAACGGTTATATCAA---AGCGTTTGGATT    779

BSNT_05415___    768 ---------GATCCTTGCGTTCTGT-TCGGCCTACTTGATTTTTCTGACT    807
                              .|||...|||  |||| ||        |.|||||..|.||.
BPUM_3206        780 ACTAGGTGCAATCGCCGCG--CTGTATC--------TCATTTTGTTAACC    819

BSNT_05415___    808 GGATCAAGAGCCAGTATCCTAGGAGTTATAGCCGGACTTGCCGTTTATAC    857
                     |.|||..|.||||||.|.||.||..|..|.||.|||.|.||..|.|||..
BPUM_3206        820 GAATCCCGCGCCAGTTTGCTTGGCATATTTGCAGGAGTGGCGATCTATGT    869

BSNT_05415___    858 GTTCATTTTGCTGCCGAAGATGCTTAAAAAATGGGCGCTCATCGCCGC-A    906
                     ||...|..||||.|||....|.||.|||||.|||.|..||||.||||| |
BPUM_3206        870 GTGGCTACTGCTCCCGCGTGTTCTCAAAAAGTGGTCAATCATTGCCGCAA    919

BSNT_05415___    907 GCTGCAGGATGTATCG-CTTTTGTCACCCTG--TTTGCAGGAAAGA-TTA    952
                     ||    |||..|.||| |.||.||..|.|||  |||.|||..|||| |||
BPUM_3206        920 GC----GGACTTGTCGTCATTGGTATCGCTGTCTTTTCAGCCAAGATTTA    965

BSNT_05415___    953 CTGGAGCTTTTTAT-ACATACTTTTTAGCTCCGCAAA-----CAATACAC    996
                     .|.|| |||||||| || |..|||.|.|||.|.||.|     ||.|    
BPUM_3206        966 TTCGA-CTTTTTATGAC-TTGTTTCTCGCTTCTCAGATCGCTCATT----   1009

BSNT_05415___    997 GATTTCAGCGAGCCGCTGCCATCCAATGTAGGGAGGGCAAACTTGTTGAA   1046
                      .|||.||.||.||.||.||.||.||..|.|.|||.||.||.|||.||||
BPUM_3206       1010 -CTTTTAGTGAACCACTCCCGTCTAACATCGCGAGAGCGAATTTGATGAA   1058

BSNT_05415___   1047 AAACGC-CGGCCATTATGTGCTGGATACTTACGGATTTGGCGTTGGCGCA   1095
                     |||.|| .|||..||.|.|.| |.||.|.||||||||.||.|||||.||.
BPUM_3206       1059 AAATGCTTGGCACTTCTTTAC-GAATTCATACGGATTCGGGGTTGGAGCG   1107

BSNT_05415___   1096 GGCAATGTACCTTATTATTTGGAACATCATGCACTGTTC-------GATA   1138
                     ||.|||||..||||.|||||.|       ..||||.|||       ||||
BPUM_3206       1108 GGGAATGTGTCTTACTATTTAG-------CTCACTTTTCGATCTTTGATA   1150

BSNT_05415___   1139 CGGATCAGGTCGTCGAGGTTCATAACTGGCTCGTTGAGATCATGACGAAC   1188
                     |.||.||||||||.||.||.||.||.|||||..|.||..|.|||||||||
BPUM_3206       1151 CAGACCAGGTCGTAGAAGTGCACAATTGGCTGCTGGAATTGATGACGAAC   1200

BSNT_05415___   1189 TTTGGAGTTGTGATGATGCTCGGTTATTTAACAATGTACATTTATTTAAT   1238
                     ||||||.|||...|.|||||.||.|||.|..||.|.|||...|||.|.| 
BPUM_3206       1201 TTTGGATTTGCAGTCATGCTGGGCTATATCTCACTATACGCCTATCTCA-   1249

BSNT_05415___   1239 AACTGT----GCTTTACCGGTATTATAA------------AAGATCGCTT   1272
                        |||    .||||||..|.|.||.||            ||||||    
BPUM_3206       1250 ---TGTTCACACTTTACAAGCAATACAAATGGGCTGACACAAGATC----   1292

BSNT_05415___   1273 GGAAGGCGGCCAAAGCTTCTCATTGAAG----GTTTGACAGCCGCGCTTG   1318
                        ||     ||||..|..|||||||.|    ||||| |||||..|||  
BPUM_3206       1293 ---AG-----CAAAAATGATCATTGAGGGGTTGTTTG-CAGCCATGCT--   1331

BSNT_05415___   1319 TCGCTTTCCTTGTGTCAAGTATCAGCCCGAGTTCCGTTTCGAATTTATAC   1368
                     ..||||| ||.||.|||||||||||.||.||.|||.|.|||||||||||.
BPUM_3206       1332 GAGCTTT-CTCGTTTCAAGTATCAGTCCTAGCTCCATCTCGAATTTATAT   1380

BSNT_05415___   1369 TTCCATTGGGTGTTTCTCGCCCTTGTTATAGCGGCAATTAACACTTTTAG   1418
                     ||.||.|||||.|||.|.|..||.||.||.||.||..|.||.|..||.|.
BPUM_3206       1381 TTTCACTGGGTATTTTTAGGACTGGTGATCGCAGCGGTGAATATGTTGAA   1430

BSNT_05415___   1419 AATCAGCGGAACA--GA-TGAAACCGAACAGTATAGATAA   1455
                     ||.||    ||||  || |.||||       ||| |.|||
BPUM_3206       1431 AAACA----AACAACGACTCAAAC-------TAT-GGTAA   1458


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