Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05415 and BPUM_3206
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_05415___tuaE.1.24716.seq
# -bsequence dna-align/BPUM_3206.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05415___tuaE-BPUM_3206.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05415___tuaE-BPUM_3206.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05415___tuaE
# 2: BPUM_3206
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1590
# Identity: 981/1590 (61.7%)
# Similarity: 981/1590 (61.7%)
# Gaps: 267/1590 (16.8%)
# Score: 2624.5
#
#
#=======================================
BSNT_05415___ 1 ATGAGTCTCAAACGTTCCGC--GG----TCA-------ATGT-TCTGGTT 36
||||||.|.||||...|.|| || ||| |||| |.|.|||
BPUM_3206 1 ATGAGTGTGAAACAAACAGCATGGCAAATCATGATTGGATGTATTTTGTT 50
BSNT_05415___ 37 TGGCTCGCCGCATTGACCGCAGGG-TTAGCATGCATTGTATTGGCCCAAT 85
|| |.|||||| ||.| || ||||| |.|||
BPUM_3206 51 TG--------------CAGCAGGGATTGG---GC-TTGTA-----CAAAT 77
BSNT_05415___ 86 ---------CCAATGC----------AAAAAAAATCTTGCTAGCATGT-- 114
||| || |||.|||| ||.|.|| |||
BPUM_3206 78 GACATCCACCCA--GCCCGTTGGGTTAAAGAAAA---TGGTGGC-TGTTC 121
BSNT_05415___ 115 -----CTAATTATGATTGCACTGACTTC-GATCGTTGTGCTCAGGAAGTA 158
.||.||.|||| .|||.||.| |.|| |.|||.|.|.|||||
BPUM_3206 122 CGGTAATACTTCTGAT---CCTGGCTGCTGCTC-TCGTGTTGATGAAGT- 166
BSNT_05415___ 159 TATGT-CAT-----CTGAGCAATTGCTAATGCCCG-TAT-TATATTTGCT 200
||| ||| .|||||||.|..|.|||.|.| .|| |||.||| |
BPUM_3206 167 --TGTACATGAATGGTGAGCAAATCTTCATGTCAGCCATCTATCTTT--T 212
BSNT_05415___ 201 GATCGCTGCA---ACTTTTGCCAACAATGCTTTTTTTACGATTAAATTG- 246
|| ||.|| ||.|||..||||||.|||||||||.|.||| |.||
BPUM_3206 213 GA---CTACATTGACCTTTCTCAACAACGCTTTTTTTTCTATT--AGTGC 257
BSNT_05415___ 247 -GGCTTTTTCAGCCTGTTTCCATATCGAATTCTTCTGATTCTGGCAG--- 292
||.||.||.|||||.||||..||.||.||..|.||.| |.||.|
BPUM_3206 258 TGGATTCTTTAGCCTTTTTCTCTACCGTATCATGCTCA---TCGCCGCCT 304
BSNT_05415___ 293 --GATTCATATTCATA--GC-----AGAAATGTTGAAAGGCAGCCG-ACA 332
|.|| |||||||| || ||| ||||.|..|.|| |||
BPUM_3206 305 TTGCTT--TATTCATATGGCGGATGAGA------GAAAAGGGGACGTACA 346
BSNT_05415___ 333 CCT-TGAAAAGTGGAATCAGGTGCGTGTCAAAGGCATACTAATG--TTTT 379
..| |.|| |||.|.|||.|.|||||||||||.||.|| || ||||
BPUM_3206 347 TATCTCAA---TGGCAGCAGATTCGTGTCAAAGGTATTCT--TGGTTTTT 391
BSNT_05415___ 380 TCGCATTTTGG-TTCTGTTATGGAATGATTTCACTGCTTTGGGTCAAATC 428
||.||...||| |||| |||.|||.|.||.|||||||||||||...|.||
BPUM_3206 392 TCTCAGCATGGTTTCT-TTACGGACTCATCTCACTGCTTTGGGCGCATTC 440
BSNT_05415___ 429 TGTTACTGATGGCATAAAATATATGTTCCTATTGGCAATGGGAATGTTCT 478
.||.||.||.|||.|.||||||||||.|||..|.||||||||||||...|
BPUM_3206 441 AGTCACAGACGGCCTGAAATATATGTCCCTTCTTGCAATGGGAATGGGAT 490
BSNT_05415___ 479 TCGTTTTTCTGATTGTCATGTTTTTTCAAAAATTGGATCGCATTTTCGCA 528
|.||.|||||..|.|||||||.|.||||...|.||||.|...|..|..|.
BPUM_3206 491 TTGTCTTTCTAGTCGTCATGTATATTCAGCGAATGGACCAAGTGGTGACC 540
BSNT_05415___ 529 TTTTATTACATATGGCTGGTCATGACCGTATTTGTAATGGGGATAGGGTT 578
||||||..|||.|||||.||.|||||.||.|||||.||||||||.|||||
BPUM_3206 541 TTTTATAGCATTTGGCTCGTGATGACTGTGTTTGTGATGGGGATTGGGTT 590
BSNT_05415___ 579 TTACAATCACTTTACATTCAACCACCTGCCGAGCTCGACC-CTTTACAAC 627
.||.||||||||||||||.|||||..|.|||| ..||| |.|||.|.|
BPUM_3206 591 CTATAATCACTTTACATTGAACCATTTACCGA---ATACCTCATTATATC 637
BSNT_05415___ 628 --GGGCC-GCACTATAAACAGCACTATCCGACATCCGTTTTTTTCAATCA 674
||||| ||| |||||||||||||||||.|||||.||.|||||.|||||
BPUM_3206 638 TAGGGCCAGCA-TATAAACAGCACTATCCTACATCTGTCTTTTTTAATCA 686
BSNT_05415___ 675 AAATGACTTTGCGACATTTCTGTCCATCAGCTTTTGCTTTTATTTA---- 720
.|||||||||||.||.|||.|.||.||.||.||.|.|||.|||.||
BPUM_3206 687 GAATGACTTTGCAACGTTTTTATCGATTAGTTTCTTCTTATATCTAGCGT 736
BSNT_05415___ 721 TCTTTTTTCAAAAACATTAAAAACAGCTATTTAAAAATAGC---AGGATT 767
.|.|...|||| ||.||||||.|.|||.|.|| ||| .|||||
BPUM_3206 737 GCATGCGTCAA----ATGAAAAACGGTTATATCAA---AGCGTTTGGATT 779
BSNT_05415___ 768 ---------GATCCTTGCGTTCTGT-TCGGCCTACTTGATTTTTCTGACT 807
.|||...||| |||| || |.|||||..|.||.
BPUM_3206 780 ACTAGGTGCAATCGCCGCG--CTGTATC--------TCATTTTGTTAACC 819
BSNT_05415___ 808 GGATCAAGAGCCAGTATCCTAGGAGTTATAGCCGGACTTGCCGTTTATAC 857
|.|||..|.||||||.|.||.||..|..|.||.|||.|.||..|.|||..
BPUM_3206 820 GAATCCCGCGCCAGTTTGCTTGGCATATTTGCAGGAGTGGCGATCTATGT 869
BSNT_05415___ 858 GTTCATTTTGCTGCCGAAGATGCTTAAAAAATGGGCGCTCATCGCCGC-A 906
||...|..||||.|||....|.||.|||||.|||.|..||||.||||| |
BPUM_3206 870 GTGGCTACTGCTCCCGCGTGTTCTCAAAAAGTGGTCAATCATTGCCGCAA 919
BSNT_05415___ 907 GCTGCAGGATGTATCG-CTTTTGTCACCCTG--TTTGCAGGAAAGA-TTA 952
|| |||..|.||| |.||.||..|.||| |||.|||..|||| |||
BPUM_3206 920 GC----GGACTTGTCGTCATTGGTATCGCTGTCTTTTCAGCCAAGATTTA 965
BSNT_05415___ 953 CTGGAGCTTTTTAT-ACATACTTTTTAGCTCCGCAAA-----CAATACAC 996
.|.|| |||||||| || |..|||.|.|||.|.||.| ||.|
BPUM_3206 966 TTCGA-CTTTTTATGAC-TTGTTTCTCGCTTCTCAGATCGCTCATT---- 1009
BSNT_05415___ 997 GATTTCAGCGAGCCGCTGCCATCCAATGTAGGGAGGGCAAACTTGTTGAA 1046
.|||.||.||.||.||.||.||.||..|.|.|||.||.||.|||.||||
BPUM_3206 1010 -CTTTTAGTGAACCACTCCCGTCTAACATCGCGAGAGCGAATTTGATGAA 1058
BSNT_05415___ 1047 AAACGC-CGGCCATTATGTGCTGGATACTTACGGATTTGGCGTTGGCGCA 1095
|||.|| .|||..||.|.|.| |.||.|.||||||||.||.|||||.||.
BPUM_3206 1059 AAATGCTTGGCACTTCTTTAC-GAATTCATACGGATTCGGGGTTGGAGCG 1107
BSNT_05415___ 1096 GGCAATGTACCTTATTATTTGGAACATCATGCACTGTTC-------GATA 1138
||.|||||..||||.|||||.| ..||||.||| ||||
BPUM_3206 1108 GGGAATGTGTCTTACTATTTAG-------CTCACTTTTCGATCTTTGATA 1150
BSNT_05415___ 1139 CGGATCAGGTCGTCGAGGTTCATAACTGGCTCGTTGAGATCATGACGAAC 1188
|.||.||||||||.||.||.||.||.|||||..|.||..|.|||||||||
BPUM_3206 1151 CAGACCAGGTCGTAGAAGTGCACAATTGGCTGCTGGAATTGATGACGAAC 1200
BSNT_05415___ 1189 TTTGGAGTTGTGATGATGCTCGGTTATTTAACAATGTACATTTATTTAAT 1238
||||||.|||...|.|||||.||.|||.|..||.|.|||...|||.|.|
BPUM_3206 1201 TTTGGATTTGCAGTCATGCTGGGCTATATCTCACTATACGCCTATCTCA- 1249
BSNT_05415___ 1239 AACTGT----GCTTTACCGGTATTATAA------------AAGATCGCTT 1272
||| .||||||..|.|.||.|| ||||||
BPUM_3206 1250 ---TGTTCACACTTTACAAGCAATACAAATGGGCTGACACAAGATC---- 1292
BSNT_05415___ 1273 GGAAGGCGGCCAAAGCTTCTCATTGAAG----GTTTGACAGCCGCGCTTG 1318
|| ||||..|..|||||||.| ||||| |||||..|||
BPUM_3206 1293 ---AG-----CAAAAATGATCATTGAGGGGTTGTTTG-CAGCCATGCT-- 1331
BSNT_05415___ 1319 TCGCTTTCCTTGTGTCAAGTATCAGCCCGAGTTCCGTTTCGAATTTATAC 1368
..||||| ||.||.|||||||||||.||.||.|||.|.|||||||||||.
BPUM_3206 1332 GAGCTTT-CTCGTTTCAAGTATCAGTCCTAGCTCCATCTCGAATTTATAT 1380
BSNT_05415___ 1369 TTCCATTGGGTGTTTCTCGCCCTTGTTATAGCGGCAATTAACACTTTTAG 1418
||.||.|||||.|||.|.|..||.||.||.||.||..|.||.|..||.|.
BPUM_3206 1381 TTTCACTGGGTATTTTTAGGACTGGTGATCGCAGCGGTGAATATGTTGAA 1430
BSNT_05415___ 1419 AATCAGCGGAACA--GA-TGAAACCGAACAGTATAGATAA 1455
||.|| |||| || |.|||| ||| |.|||
BPUM_3206 1431 AAACA----AACAACGACTCAAAC-------TAT-GGTAA 1458
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