Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05397 and BPUM_3201
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_05397___yvhJ.1.24716.seq
# -bsequence dna-align/BPUM_3201.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05397___yvhJ-BPUM_3201.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05397___yvhJ-BPUM_3201.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05397___yvhJ
# 2: BPUM_3201
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1150
# Identity: 702/1150 (61.0%)
# Similarity: 702/1150 (61.0%)
# Gaps: 215/1150 (18.7%)
# Score: 2180.0
#
#
#=======================================
BSNT_05397___ 1 ATGCCAGAACGAGTTAAGGTTCGTGT---AAAGAAAAAAAAAAATAAACG 47
|||.||.|||||||.||.||.||||| |||||||||.|..||.|| |
BPUM_3201 1 ATGGCACAACGAGTAAAAGTGCGTGTACGAAAGAAAAAGAGTAAGAA--G 48
BSNT_05397___ 48 A--AAAATTATTTTAAAGCGTA---------TATTATTGCTCTTTTTCCT 86
| ||||| ||||||| |||| ||||.|||||..|||||.|
BPUM_3201 49 AAGAAAAT--TTTTAAA-CGTATCCTGGTCTTATTTTTGCTTCTTTTCAT 95
BSNT_05397___ 87 ATTTTCTATAGTATTCGCAGGAATAATTGGATATAAAGTATATAAA---- 132
.| ||||..| |||||.|..|||.||||||
BPUM_3201 96 CT--------GTATGGG----------TGGATTTGCAGTCTATAAAATAG 127
BSNT_05397___ 133 -----ACGCTTCAAGCAGCTGATAGTTCCTATAAAGAATTAGATCGTGGT 177
||.||||||||.|||||.|...|.|||.|.|||.|||||||.||.
BPUM_3201 128 TCAATACACTTCAAGCCGCTGACAAAACATATGATGAACTAGATCGCGGC 177
BSNT_05397___ 178 GAAAAGTCGAAATTACGCAAAGAAGTAGTTGATCTTAAGAAAAAACAACC 227
||.||.|||||..|.||..|.|..||..|||||.|| |||||..||||
BPUM_3201 178 GAGAAATCGAAGCTTCGTGATGCGGTCATTGATATT---AAAAAGAAACC 224
BSNT_05397___ 228 TTTTTCTGTACT-TTTGTTAGGAGTCGAAGACTATGCAACAGGCGGAAAA 276
.||.|||||||| |||| |.|||.|.||.||.|||||.||||..||
BPUM_3201 225 CTTCTCTGTACTATTTG-TCGGAATTGAGGATTATGCTACAGATGG---- 269
BSNT_05397___ 277 GGA----GGAAGAACCGATTCTATTATTGTCGCTACTATCAATCCTAAAC 322
.|| ||..|..|.|||||..||||||||||.||.||.||||||.||.
BPUM_3201 270 TGATCATGGCCGTTCAGATTCACTTATTGTCGCAACCATTAATCCTCAAG 319
BSNT_05397___ 323 AAAAGACCATGAA----GTTACTGAGCATTCCTCGAGATACAAGAG---- 364
|.||.||.||||| ||| |||||||||||.||.|||.|.|
BPUM_3201 320 ACAAAACGATGAAAATGGTT----AGCATTCCTCGTGACACACGCGTACA 365
BSNT_05397___ 365 --TTGAAATATCTGGTGATACTTCTGGGACAAAAA--CGAGAATTAATTC 410
|||.|| ||||.||..|.||.| |.||| |.|| ||||||.|
BPUM_3201 366 GCTTGCAA------GTGACACGACAGGTA-ATAAAGTCAAG-ATTAATGC 407
BSNT_05397___ 411 TGCATATGGGAAAGGCGGAGCTCAAACA----ACTGTTGAAACGGTTGAA 456
.||||.||..|||||||| .|||.| ||..|.|||||.||.|||
BPUM_3201 408 GGCATTTGCTAAAGGCGG----TAAAGACGAGACGATCGAAACTGTCGAA 453
BSNT_05397___ 457 AAGCTCTTAAATATACCAATTGATTACTATGCTACTGTGGATTTTAAAGG 506
.|..||||.|||||.||.||||||.|.|||||.||.||.||||||.|.||
BPUM_3201 454 CAATTCTTGAATATTCCGATTGATAAATATGCGACCGTTGATTTTGACGG 503
BSNT_05397___ 507 CTTCAAAAAAACAATTGATGAAGTTGGTGGAGTTGATGTTGAGGTCCCCT 556
.|||||..|....|||||||||||||.||||.|||||.|.||.||.||.|
BPUM_3201 504 ATTCAAGGATGTCATTGATGAAGTTGATGGAATTGATATCGATGTTCCAT 553
BSNT_05397___ 557 TTGATTTTAATGAGAAAAGTGATACATCAAAATCTAAAAA-ATTCTATTT 605
||||.||.|||||.|||||||||..|..||||||.||||| ||| |||||
BPUM_3201 554 TTGACTTCAATGAAAAAAGTGATGTAAAAAAATCGAAAAAGATT-TATTT 602
BSNT_05397___ 606 TCAAAAAGGGAATATGCATCTAAATGGGGAAGAGGCTCTTGCCTATGCAC 655
..|||||||.|||||||||.||||.||||||||.||.|||||||||||||
BPUM_3201 603 CAAAAAAGGAAATATGCATTTAAACGGGGAAGAAGCACTTGCCTATGCAC 652
BSNT_05397___ 656 GGATGAGAAAACAAGATCCACGGGGTGACTTCGGGCGTAATGATAGACAA 705
||||||||||||||||||||||.|||||.||.||.|||||||||.|.||.
BPUM_3201 653 GGATGAGAAAACAAGATCCACGCGGTGATTTTGGACGTAATGATCGTCAG 702
BSNT_05397___ 706 AAACAAATTTTGATG-GCCATGTTAGATCAAGTCTCAAAACCTTCTAATC 754
||||||||||| |.| ||.|||.|.||||||.|.||.||..|...|||..
BPUM_3201 703 AAACAAATTTT-ACGTGCAATGATTGATCAAATGTCGAAGGCGAATAACA 751
BSNT_05397___ 755 TTGCAAAAATTGATACCCTAGCAGATCAAGTAAGTGATAACATAACAACA 804
|.||.||..|.||||...|.||..|..||||.||||||.|.||.||.||.
BPUM_3201 752 TCGCGAACGTCGATAATATTGCGAAAGAAGTCAGTGATCATATTACGACC 801
BSNT_05397___ 805 AATTTAAGGATTACCCAAGTCCTAGCACTTCAACAAATTTTTAGCGGTTT 854
||.||..|.||.||..|||..|||||.|||||.||.||.|..|||||.||
BPUM_3201 802 AACTTCCGTATCACAGAAGGTCTAGCCCTTCAGCAGATCTACAGCGGGTT 851
BSNT_05397___ 855 TAAAGGTAACGATGTTGAAACATTAACTCTAAAAGGCTCAGATTTATATA 904
|||.||..||||....||||||.|..||.|.|||||.||.|||.|.|||.
BPUM_3201 852 TAAGGGAGACGACACAGAAACACTTTCTATTAAAGGGTCGGATCTTTATT 901
BSNT_05397___ 905 TCGG---AAAT---AAGTACTTCTTTCAACCTGATGATGAA-GAAT-TAA 946
|.|| |||| |.|||.|.||||.|.||.|||.| || .||| ||.
BPUM_3201 902 TAGGACCAAATCGAACGTATTACTTTGAGCCAGATCA--AACCAATCTAG 949
BSNT_05397___ 947 CAAAAGTTCAAGAAGAA----------CTTTATAACTTTTTGTACCCTGA 986
|.||.||.|||.|.||| .||||.|.||| |||..
BPUM_3201 950 CCAACGTACAAAATGAATTAAGGACGCATTTAAAGCTT-------CCTAC 992
BSNT_05397___ 987 TAAAT---------AA---------------------------------- 993
|.||| ||
BPUM_3201 993 TGAATCTTCGACAGAAACAGATTCACAAACGAATCCATCCTCTGGCGAAA 1042
BSNT_05397___ 993 -------------------------------------------------- 993
BPUM_3201 1043 CAGGGTCAAGTGATATAACTAACCCTTCGACCAACACATCAGGCCAATAA 1092
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