Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05392 and BPUM_3196
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_05392___comFA.1.24716.seq
# -bsequence dna-align/BPUM_3196___comFA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05392___comFA-BPUM_3196___comFA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05392___comFA-BPUM_3196___comFA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05392___comFA
# 2: BPUM_3196___comFA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity: 905/1557 (58.1%)
# Similarity: 905/1557 (58.1%)
# Gaps: 342/1557 (22.0%)
# Score: 2348.5
#
#
#=======================================
BSNT_05392___ 1 GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATT------ 44
.|||| || ||.|.|||.||.| || ||.|
BPUM_3196___c 1 TTGAA-----CA--TGGACAAAGCAAT----------GA-AACTCGGGGA 32
BSNT_05392___ 45 GCA---GCAG--ACGCTTCGAAGCCGTCATTTGCTCAGGACTGA------ 83
||| |||| |||| ||..||||.|...||||
BPUM_3196___c 33 GCAACTGCAGTCACGC-----------CACCTGCTTACCGCTGAAACAAG 71
BSNT_05392___ 84 --GCTCTCATTTTCCGATGAGAT-GATTGAATGGCATATCAAG----AAT 126
|||..||.| .||||.| |||||..||| || ||.
BPUM_3196___c 72 ATGCTTACAGT-----CTGAGTTAGATTGGCTGG-------AGGAGAAAG 109
BSNT_05392___ 127 GGATA--TATC------ACTGCTGAAAATTCTATATCCAT--------AA 160
||.|| |||| |||||| || ||
BPUM_3196___c 110 GGTTAGTTATCCGAAGGACTGCT---------------ATTGAGAGGAAA 144
BSNT_05392___ 161 ATAAACGGGGATAT-------AGATGTAATAGGTGCGGCCAAACTGATCA 203
..|||.||...||| |||||| ||||...|.||| .||||
BPUM_3196___c 145 GCAAATGGTCTTATTTGTTGCAGATGT----GGTGTTTCAAAA--AATCA 188
BSNT_05392___ 204 GCGGTATTATTCTTTTTATCACT---CATCTGGAAAG----AATAAG--- 243
||.| |||...|||| |||.||..||| ||.|||
BPUM_3196___c 189 --------ATAC-TTTGCCCACTCTCCATGTGACAAGTGTCAAAAAGATT 229
BSNT_05392___ 244 --CTGTATTGCCGTTCCTGTGTCATGATGGGCAGA----------GTGAG 281
.||||.||..|.||.||..||||||||||.|.| ||||.
BPUM_3196___c 230 GTGTGTACTGTAGATCATGCATCATGATGGGGAAAACATCGGAATGTGAA 279
BSNT_05392___ 282 TGAGGAGGTTCCTTTATATTCATGGGAAGAGG---------AAAATGAAC 322
| ||| |||||..|||| |..|| |.||.||||
BPUM_3196___c 280 T-------TTC---TATATGAATGG--ACGGGTCCACCCATAGAAGGAAC 317
BSNT_05392___ 323 ----CAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAG 368
||.||.| ||||| ||||||...||.||.||.||.|.
BPUM_3196___c 318 CGCTCACACGG------AATTA-----ACATGGCGGGGAAACCTGTCTAA 356
BSNT_05392___ 369 CGGACAGCAAAAAG-----CCGCCAATGTTTTAATTGAAGCAATATCAAA 413
.||||| |||||| |.|..|| .||.||.|||||.|| ||
BPUM_3196___c 357 AGGACA--AAAAAGAGCATCAGAAAA---ATTGATCGAAGCGAT----AA 397
BSNT_05392___ 414 AAAAGAA----GAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACA 459
||.|.|| ||..|.||.||||||||.||||||||.||.||.||||||
BPUM_3196___c 398 AACACAAATCTGATTTACTTATCTGGGCAGTTTGCGGGGCAGGGAAAACA 447
BSNT_05392___ 460 GAAATGCTGTTTCCTGGTATAGAATCAGCGTTAAATCAAGGACTGCGTGT 509
|||.|.||.||||..||.|||||||..||.|||.||||||||.||.|.||
BPUM_3196___c 448 GAAGTTCTTTTTCACGGAATAGAATATGCCTTACATCAAGGAATGAGGGT 497
BSNT_05392___ 510 ATGTATTGCAACACCTCGCACCGATG------TTGTATTAGAGCTTGCTC 553
|||.|||||.||||||.|.||.|||| |||.|.|||||| |||
BPUM_3196___c 498 ATGCATTGCGACACCTAGAACTGATGTGGTCCTTGAACTAGAGC---CTC 544
BSNT_05392___ 554 CAAGGCTCAAGGCTGCCTTTCAGGGGGCTG-ACATTTCAGCGCTTTACGG 602
||||.||....||.||||| .||.||| |.||..|.||.|||||.||
BPUM_3196___c 545 ---GGCTTAAAAAAGCATTTCA-CGGACTGAAAATAGCTGCTCTTTATGG 590
BSNT_05392___ 603 AGGAAGCGATGACAAAGG--GCGGCTATCTCCGCTTATGATTTCCACTAC 650
||||||...| |||||| .|...||.|.|||||..|.||..|.||.||
BPUM_3196___c 591 AGGAAGTCTT--CAAAGGTTCCAAATAGCACCGCTAGTAATCGCTACAAC 638
BSNT_05392___ 651 GCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATG 700
.||||||.|..||.||||||||.|||||.|.|||||..|..|.||.||||
BPUM_3196___c 639 TCATCAGTTGATGAGATATAAACATGCATTTGATGTGCTCGTTATAGATG 688
BSNT_05392___ 701 AAGTTGACGCTTTTCCATATTCCGCTGATCAAACCCTTCAATTCGCTGTT 750
|||||||.||.|||||.|||||....|||.||...||.||.||.||||||
BPUM_3196___c 689 AAGTTGATGCCTTTCCTTATTCAATGGATGAACGACTCCACTTTGCTGTT 738
BSNT_05392___ 751 CAAAAAGCAA-GAAAGAAAAA-----CAGCACCCTCGTTTATTTAAGTGC 794
..|||.|||| ||.|.||||| .|| .||||||||||||||
BPUM_3196___c 739 TTAAAGGCAATGAGAAAAAAAGGTGTTAG------GGTTTATTTAAGTGC 782
BSNT_05392___ 795 AACACCTCCTAAAGAATTAAAAAGAAAAGCA-CTGAAC--GGACAGTTA- 840
.||.||..||||..||.|.|.||||.|.|.| || | |||||..||
BPUM_3196___c 783 GACGCCATCTAAGAAAATGATAAGAGATGTATCT---CGTGGACAACTAG 829
BSNT_05392___ 841 ----CAT---------TCAGTTCGCATCCCCGCAAGACACCACCGGAAAC 877
||| || |||||.| .|||||.| |||
BPUM_3196___c 830 AAGCCATAAAAATTCCTC--TTCGCTT---------TCACCAAC---AAC 865
BSNT_05392___ 878 CTTTACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTA 927
.||||||.|..||...||||..||||..||||.|||||||||||||||||
BPUM_3196___c 866 TTTTACCTGTCCCATCCTTTCAATGGATTGGACACTGGAAGAAGAAATTA 915
BSNT_05392___ 928 AACCGAAATA---AAATTCCGCC---AGCGGTGAAAAGATGGATAGAGTT 971
|| |||.| |..||||.|| ||...|||| .|||||..||..
BPUM_3196___c 916 AA---AAAGAACCAGCTTCCACCTATAGTAATGAA---TTGGATGCAGAA 959
BSNT_05392___ 972 TCATGT--AAAAGAAG-GGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTT 1018
.|||.| .||||||| |.||| |||||..|.||.||||||||..|||
BPUM_3196___c 960 CCATATTGCAAAGAAGAGAAGG---GTTTTACTTTTTGTTCCTTCTATTT 1006
BSNT_05392___ 1019 CTATTCTGGAAAAGGCTGCTGCGTGCTTTA--GAGGTGTTCATTGCCGA- 1065
|||.|.||.|.|||| || ||.| ||||.|.|...|
BPUM_3196___c 1007 CTACTATGAAGAAGG-------------TAACGAAG-GTTCTTAGAAAAC 1042
BSNT_05392___ 1066 ACCGC----ATCT-------GTGCACGCGGAAGA-CAAGCATAGAAAGGA 1103
|||.| ||.| |||...||.||.|| |.|| ||||.||..|
BPUM_3196___c 1043 ACCACTTAAATGTAGAAGGGGTGTCTGCTGATGATCCAG-ATAGGAAACA 1091
BSNT_05392___ 1104 GAAAGTGCAGCAATTCAGAGATGGTCAGCT-CGATCTATTAATCACAACA 1152
.||.||.||||||||||||||| |.||..| ||||.|||||.|.|||||.
BPUM_3196___c 1092 AAAGGTCCAGCAATTCAGAGAT-GACAAATACGATGTATTAGTTACAACC 1140
BSNT_05392___ 1153 ACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTACT 1202
|||||.||.|||||||||||.||..|.||.||.||||||..|||.||.||
BPUM_3196___c 1141 ACAATTCTTGAAAGAGGCGTAACCATTCCAAATGTGCAAGTGGGGGTGCT 1190
BSNT_05392___ 1203 AGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAG 1252
|||.||.|||||..||||||||||.|||||.|||||||||||.|||.|.|
BPUM_3196___c 1191 AGGTGCAGAATCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTG 1240
BSNT_05392___ 1253 GAAGAACCGGCCGGCATAAAGAATATGCGGACGGCGATGTCATTTTCTTT 1302
|.|||.|.||..|.|||...||.|.|....|.||.|||||..|.||.|||
BPUM_3196___c 1241 GTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGTTTTCTTTTTT 1290
BSNT_05392___ 1303 CACTTCGGCAAAACAAAGAGTATGCTCGATGCAAG-AAAG---CATATAA 1348
||.||.||...|||.|..||||| ||..|||| |||| |||||..
BPUM_3196___c 1291 CATTTTGGTTTAACGAGAAGTAT----GAAACAAGCAAAGAATCATATTG 1336
BSNT_05392___ 1349 AAGAAATGAATGA-ATTGGCAGCAAAAGTTGAATGTACAGACT----AG- 1392
.|.|||||||||| | |||| |||| |.|||.| ||
BPUM_3196___c 1337 TAAAAATGAATGATA----CAGC------TGAA---AAAGAGTTCTCAGA 1373
BSNT_05392___ 1392 ------- 1392
BPUM_3196___c 1374 AAAATAA 1380
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