Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05388 and BPUM_3193

See Amino acid alignment / Visit BSNT_05388 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:01
# Commandline: needle
#    -asequence dna-align/BSNT_05388___yvyF.1.24716.seq
#    -bsequence dna-align/BPUM_3193.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05388___yvyF-BPUM_3193.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05388___yvyF-BPUM_3193.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05388___yvyF
# 2: BPUM_3193
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 450
# Identity:     284/450 (63.1%)
# Similarity:   284/450 (63.1%)
# Gaps:          60/450 (13.3%)
# Score: 795.0
# 
#
#=======================================

BSNT_05388___      1 ATGGGAGAACTGGCTAATTGTCCGAAATGCAAT--GCTTTATTTTTAAAA     48
                     |||....||.||||.||.||.||..||||.|||  ||  |.|||||||||
BPUM_3193          1 ATGAATCAATTGGCAAACTGCCCACAATGTAATCAGC--TGTTTTTAAAA     48

BSNT_05388___     49 ACAAAGCTGCAAACTGTATGT----CAGGCGTGTATTAAGGAAGAAGAAA     94
                     ||.|...|.|||||.||.|||    .|.||.|       .|||||||||.
BPUM_3193         49 ACGACCATCCAAACGGTTTGTAACAAATGCTT-------CGAAGAAGAAG     91

BSNT_05388___     95 AA---TCATTTGAGACTGTCTATAAATTTTTAAGAAAACAGGAA--AACC    139
                     ||   ||.|||||.|..||.|||||||||||..||||.||  ||  ||..
BPUM_3193         92 AACGTTCTTTTGATATCGTTTATAAATTTTTGCGAAAGCA--AAGTAATA    139

BSNT_05388___    140 GGCAATCAACT-TTGAGCCGG--ATAACTGAGGAAACAGGTGTGGAAGAA    186
                     |.||||||||| |||   |.|  |||...||.|.|||||..||.||.|||
BPUM_3193        140 GACAATCAACTATTG---CTGAAATAGTAGATGCAACAGAAGTTGATGAA    186

BSNT_05388___    187 GAGCTGATATTGAAATTCATCAGGCAGAAGCGAATTCAGATCACTCATCT    236
                     ||..|.||.||||||||.|||.|...|||..||.||||.||.|..||..|
BPUM_3193        187 GAATTAATCTTGAAATTTATCCGCTTGAAAAGACTTCAAATTAGCCAATT    236

BSNT_05388___    237 TCCTAATTTGGCA--TACCCTTGTGAAAAGTGCGGGACATCGATTAGAGA    284
                     |||.|||.|  ||  ||.||||||||||..||.||...|.||||.||..|
BPUM_3193        237 TCCGAATAT--CAACTATCCTTGTGAAAGATGTGGCCAACCGATCAGGAA    284

BSNT_05388___    285 AGGCAAGTTCTGCA------------AGG--ATTGCCAGTCCGATATTAA    320
                     |..||||.|.||||            |||  |||  |||| ||..|.|||
BPUM_3193        285 AAACAAGCTGTGCAGCCAATGTGAACAGGACATT--CAGT-CGCAAATAA    331

BSNT_05388___    321 GGATCAAATGGATCATTTGAACCACGAGGATGCTCTGAAAATCGAGAAAG    370
                     |  |||||         |||||||.||.||.|..|..||||..||||..|
BPUM_3193        332 G--TCAAA---------TGAACCAAGAAGAAGAGCGTAAAAGGGAGATTG    370

BSNT_05388___    371 AAAATAGTAAAAAAGACACATACTATGCCTATAATACCAAAAACAGCTGA    420
                     ||..|||.|||||||||||.||.||||||..||||.|.||||||...|||
BPUM_3193        371 AATCTAGGAAAAAAGACACCTATTATGCCATTAATCCTAAAAACGATTGA    420


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