Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05387 and BPUM_3192

See Amino acid alignment / Visit BSNT_05387 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:01
# Commandline: needle
#    -asequence dna-align/BSNT_05387___flgM.1.24716.seq
#    -bsequence dna-align/BPUM_3192___flgM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05387___flgM-BPUM_3192___flgM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05387___flgM-BPUM_3192___flgM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05387___flgM
# 2: BPUM_3192___flgM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 287
# Identity:     185/287 (64.5%)
# Similarity:   185/287 (64.5%)
# Gaps:          43/287 (15.0%)
# Score: 553.5
# 
#
#=======================================

BSNT_05387___      1 ATGAAAATCAATCAATTTGGAACACAATCCGTTAATCCATATCAA-AAAA     49
                     .|||||||.||||.||.||||||||||.|.||.|||||.|| ||| ||||
BPUM_3192___f      1 GTGAAAATTAATCGATATGGAACACAACCAGTAAATCCTTA-CAAGAAAA     49

BSNT_05387___     50 ATTATGATAAGCAAGCGGTGCAAAAAACTGCTGCACAGCCTCAA--GATA     97
                     ..|||||.||.|||.||.|||||..||.|...|||.|  .||||  ||||
BPUM_3192___f     50 CATATGAGAAACAAACGTTGCAATCAAATCAAGCAAA--ATCAACTGATA     97

BSNT_05387___     98 AAATTGAAATTTCATCACAGGCTAAAGAAATGCAACA--TGC-----ATC    140
                     ||.|.||||||||...|.||||.|..|||||||||.|  |||     |||
BPUM_3192___f     98 AAGTCGAAATTTCTAAAAAGGCAATCGAAATGCAAAAGGTGCCGAATATC    147

BSNT_05387___    141 -----CGACGCAGTCACTGGTTCACGACAGGAAAAAATTGCGCAGCTTAA    185
                          .||               |||.||.||.|||||.|..||..||||
BPUM_3192___f    148 ATGAAAGA---------------ACGCCAAGATAAAATAGATCAAATTAA    182

BSNT_05387___    186 AGCGCAA----ATTGAAAACGGGTCATACAAAGTAGACGCAAATCATATC    231
                     |    ||    ||||||..|||..||||..|||||||..||||...|||.
BPUM_3192___f    183 A----AAAAGCATTGAAGCCGGAACATATCAAGTAGATACAAAAGGTATT    228

BSNT_05387___    232 GC-GAAAAATATAATTAATTTTTATAAAAAGCAATAA    267
                     || ||.||| ||..|.||||||||||||.|.||||||
BPUM_3192___f    229 GCTGATAAA-ATGCTCAATTTTTATAAACAACAATAA    264


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