Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05377 and BPUM_3184
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:00
# Commandline: needle
# -asequence dna-align/BSNT_05377___fliD.1.24716.seq
# -bsequence dna-align/BPUM_3184___fliD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05377___fliD-BPUM_3184___fliD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05377___fliD-BPUM_3184___fliD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05377___fliD
# 2: BPUM_3184___fliD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1725
# Identity: 970/1725 (56.2%)
# Similarity: 970/1725 (56.2%)
# Gaps: 438/1725 (25.4%)
# Score: 2422.5
#
#
#=======================================
BSNT_05377___ 1 ATGGTCACAAGAATAACAGG-TCTGGCGTCAGGAATG-----GATATAGA 44
|||||.|...||||.||.|| |.| ||| |||| ||.||.||
BPUM_3184___f 1 ATGGTTAACCGAATTACTGGATTT----TCA--AATGTCTTTGACATTGA 44
BSNT_05377___ 45 TGATATTGTATCAAAGCTGATGCAGACAGAAAGAGCCCCGCTTGATAAGC 94
.||.||.||||||||.||.|||.|.||||||..|||.||.||||||||..
BPUM_3184___f 45 CGAAATCGTATCAAAACTCATGAAAACAGAACAAGCACCACTTGATAAAA 94
BSNT_05377___ 95 TG--AAGCAAAAAAAGCAGACTCTTGAATGGCAGCGTGACAGCTATCGTG 142
|| |.||.||||| ||.||.|||||||||||..|.|||||||||||||
BPUM_3184___f 95 TGACACGCCAAAAA--CAAACACTTGAATGGCAAAGAGACAGCTATCGTG 142
BSNT_05377___ 143 AAGTCAATACAAAAATAAAAGAATTGCAAGATTATAT-GTCTAAAAATAC 191
|.||.|...|||||.|.|||||||| ||||.||.| .|.||.||||
BPUM_3184___f 143 AGGTTACCTCAAAAGTCAAAGAATT---AGATGATTTAATTTACAAAT-- 187
BSNT_05377___ 192 GTTGACATA-----TCCTAGCACGTATCAGAG-CAAAACTGTGACAAGCT 235
|.||..|| |||.|||||.||| .|.| |||||..||||||||||
BPUM_3184___f 188 -TAGAATTAGGTCGTCCAAGCACATAT-GGCGCCAAAAAAGTGACAAGCT 235
BSNT_05377___ 236 CTAATGAGTCTGTGTTAACTGCTACAGGAAGCGCAAGTGCACCAAACTC- 284
|.|||||.||||...|.||.||.||.|||....|||.|||..| |||
BPUM_3184___f 236 CAAATGAATCTGCAGTCACAGCAACTGGATCAACAAATGCTGC---CTCC 282
BSNT_05377___ 285 --TTC-TTCTACTGTT---GAAGTGGCG--AGCT--TGGC----AACCG- 319
||| .|| |.|||| .||.|.||| |||| ||.| ||.||
BPUM_3184___f 283 GGTTCAATC-AATGTTACCCAACTAGCGACAGCTTCTGTCTTCAAATCGT 331
BSNT_05377___ 320 CAGCAAC-----GTATAA----GGCAAA---CAATTATACGGGATACACT 357
|.|..|| ||.|.| .||||| ||.|| .||||.|
BPUM_3184___f 332 CTGGTACTTCTGGTTTTACACCTGCAAATGGCACTT-------TTACATT 374
BSNT_05377___ 358 CAAGGCGATTACA----ATTTGGCATTTAACGTTGTTGCGCCTGGCGAAA 403
|.|||.||..||| ||| .|.|||||
BPUM_3184___f 375 CGAGGTGACAACACCAGATT----------------------CGACGAAA 402
BSNT_05377___ 404 CAACGGCAAAAACAGTG---AACATTAGTG-TGACGAGCGCCGATACGAT 449
| |.|||||.||| |.||.||.|| ||| ..|||||||.||
BPUM_3184___f 403 C-----CGAAAACGGTGACAATCAATACTGCTGA----TACCGATACCAT 443
BSNT_05377___ 450 TGAT---AATGTGATTTCTAAA--CTTAACAGCTCAGATCTAGGAGTATC 494
|||| |..|||| ||| ||.||||.||||.|..||||.||..|
BPUM_3184___f 444 TGATGACATCGTGA-----AAAAGCTGAACAACTCACAATTAGGTGTGAC 488
BSNT_05377___ 495 AGCTTTTAAAGATAAAA--TTTGGAATGGTACAGAGTACGTAGAAACAAT 542
|||||..||||...||| |||| |.||..|..|.||.||.||.||..|
BPUM_3184___f 489 AGCTTACAAAGGACAAATCTTTG--ACGGATCTAACTATGTCGATACGGT 536
BSNT_05377___ 543 TGCGTTTTCTTCTAAAG--CAACAGGTGCAGGGGGCAGTATACAGGCAGC 590
.||..|..|||| |.| |||||||||.|||.|.|||.||..|.|||.|
BPUM_3184___f 537 CGCTCTCACTTC--ACGGACAACAGGTGAAGGTGTCAGCATTAAAGCAAC 584
BSNT_05377___ 591 AGACTCTGCTACAGCTGACTTTATGTCCGGTCAGCTTGGTTTTT------ 634
.|| ||.|| || |||||||..||.||
BPUM_3184___f 585 TGA---TGGTA-----------AT------TCAGCTTCATTCTTTACTCA 614
BSNT_05377___ 635 ------CTT-----TGGATGCTGATAATAA---------GCTCACTGCTT 664
||| ||||||..|||||.|| |..||||
BPUM_3184___f 615 ATTAGGCTTCCAAGTGGATGGAGATAACAAATTAGTTGCGACCACT---- 660
BSNT_05377___ 665 ACAA----AGAAGGCACAAATGCCAAAGTTAC--AATCAACGGCTTTG-A 707
||| |.||.|||||| ||| .||.||.|| |.|| |
BPUM_3184___f 661 -CAAGGGCAAAAAGCACAA----------TACGAGATTAATGG-TCTGAA 698
BSNT_05377___ 708 AATGGAGAAGCTGACAA----ACAATTTCACGGTGAA---TGGTGTTACT 750
||||||.|| |.|||| |||.|| |.|.| ||||.||||.
BPUM_3184___f 699 AATGGAAAA--TAACAATAATACATTT-----GAGCAAGCTGGTATTACG 741
BSNT_05377___ 751 TACTCGA--TTAAAAATACAACTGCAGCCACAGGCC---CTGTTACCACA 795
|| ||| |||||...||||| |.|.|.||| |.|||...||
BPUM_3184___f 742 TA--CGAACTTAAAGGGACAAC-----CGATAAGCCTGTCAGTTTAAAC- 783
BSNT_05377___ 796 TCTGTTTCTACTGATGTTGACGGAATTTATAACCAAATCAAAGAGTTTGT 845
|||||.||.|||||.||...|||.|.|.|..||||.|||.|.|||||
BPUM_3184___f 784 ---GTTTCAACAGATGTCGATACAATCTTTGATAAAATTAAACAATTTGT 830
BSNT_05377___ 846 AGATAAATACAATGAAATGGTTGA-CAGCCTGAAT-GAAAAG---CTGAA 890
.||||||||||||||..|.||||| ||| .|.||| |.|||| .||||
BPUM_3184___f 831 TGATAAATACAATGAGCTTGTTGAGCAG-GTCAATGGCAAAGTTAATGAA 879
BSNT_05377___ 891 AGAAGAAAAATACCGAGACTATACTCCGTTGACAAGTGAACAAAAAGAAG 940
|.||||||.| ||||||||..|||.||.|||...|||.|.|||.|||
BPUM_3184___f 880 AAAAGAAATA----GAGACTATCATCCTTTAACAGCAGAAGAGAAAAAAG 925
BSNT_05377___ 941 CCATGTCCGATAAAGAGGTAGAGCTCTGGGAGGAGAAGGCGAAAAGCGGA 990
|.|||||.||.|||||.||.|||||.|||||...||..|||||....||.
BPUM_3184___f 926 CAATGTCTGACAAAGAAGTGGAGCTATGGGAAACGACAGCGAAGTCTGGC 975
BSNT_05377___ 991 TTGCTTAGAAATGATTCTA--------------GCATC-AGCACCGGCAC 1025
||.||.||||.||||||.| ||.|| |
BPUM_3184___f 976 TTACTGAGAAGTGATTCCATTTTACGAGGTGGTGCCTCTA---------- 1015
BSNT_05377___ 1026 AAACCAAATGCGGACTGACTTTTATACT----------CAAGTTAATGCG 1065
||||..|.|.|||.||||||.|| |||| |.||||.
BPUM_3184___f 1016 -----AAATAAGAAGTGATTTTTATGCTGAGATTACAACAAG-TGATGCA 1059
BSNT_05377___ 1066 GATGGGAAAA--CCTATCAATTGACAGAATTCGGCATAACAACCTCAAGT 1113
.|| |||| |.|||| |||.||.||||.||.||.||.||||.|
BPUM_3184___f 1060 AAT---AAAATTCATATC-----ACACAAATCGGAATTACCACTTCAAAT 1101
BSNT_05377___ 1114 GCTTACCAAAT---------GCGGGGGCATTTA-----GAGATTAATGAA 1149
|||| |||| || ||.|||.|||||
BPUM_3184___f 1102 -------AAATATAAAGATGGCGG-------TAAGCTTGAAATTGATGAA 1137
BSNT_05377___ 1150 GACAAACT---GAAAGCCAAAATACAAGAAGATCCGCAAAGCGT------ 1190
||.|||.| .|||||| ||..|||.|||.||.||.|..||
BPUM_3184___f 1138 GAAAAATTAAGAAAAGCC---ATTGAAGCAGACCCACAGAATGTCAGTCA 1184
BSNT_05377___ 1191 --TGCCGCTTTAT----------TTACAAGTGGGTCGAA----------- 1217
|| ||||| |||.|.||.|.|..||
BPUM_3184___f 1185 AATG----TTTATCTCGGGTAAATTAAATGTCGATTCAAAAGATAAAGAC 1230
BSNT_05377___ 1218 ------CAGCAGCGCCTATAGTGATAAAGGGATTATGAAACG----CA-- 1255
||||||| ..||||.|||..||||.|||||..|.|| ||
BPUM_3184___f 1231 AAAGCGCAGCAGC-AATATAATGAACAAGGAATTATTTATCGTGTTCAAA 1279
BSNT_05377___ 1256 --TCGGTGACACCCT----GAAAAGTACGGTGAAGAGCATTGAAGCAAAA 1299
||..|.|||.||| ||||||| |||.||..|||.
BPUM_3184___f 1280 ATTCCTTAACAGCCTTTACGAAAAGT------------ATTCAAAAAAAG 1317
BSNT_05377___ 1300 GCCGGCAACTCGACAATGGGAACCAATGATTATTCAATCGGTAAA--AAT 1347
||.||.|.|.|||||||| |||| |||| ||
BPUM_3184___f 1318 GCTGGAAGCACGACAATG----------------CAAT---TAAAGGAA- 1347
BSNT_05377___ 1348 TTAAATAC--GATCAGCAC--TGAT--ATTACCAAAA------------- 1378
||..||| |.|.||.|| |||| .|||.|||||
BPUM_3184___f 1348 -TACGTACTTGGTAAGGACCTTGATTCTTTAACAAAAAGAATGGATACAT 1396
BSNT_05377___ 1379 TGCAGGACCGGTTAACCACAA----TAGAAAACCGCTATTATTCAAAA-- 1422
|.||.||.||.||.| || |.||||.||||||.|| |||||
BPUM_3184___f 1397 TTCAAGATCGTTTGA----AAATGGTGGAAACCCGCTACTA--CAAAAAG 1440
BSNT_05377___ 1423 TTCAGTGCAATGGATTCTGCGATTCAAAAAATGAACGAACAAGCGTCCTA 1472
||.||.||.||||||...|||||||||||..|.|||.|.|||.|...|||
BPUM_3184___f 1441 TTTAGCGCCATGGATAGCGCGATTCAAAAGCTAAACAACCAATCTGGCTA 1490
BSNT_05377___ 1473 TTTATCACAGCTTCTTGTACAATAA 1497
|.|.||.||.||.||||.|||||||
BPUM_3184___f 1491 TCTTTCTCAACTGCTTGGACAATAA 1515
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