Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05373 and BPUM_3181
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:59
# Commandline: needle
# -asequence dna-align/BSNT_05373.1.24716.seq
# -bsequence dna-align/BPUM_3181.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05373-BPUM_3181.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05373-BPUM_3181.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05373
# 2: BPUM_3181
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 428
# Identity: 254/428 (59.3%)
# Similarity: 254/428 (59.3%)
# Gaps: 97/428 (22.7%)
# Score: 662.5
#
#
#=======================================
BSNT_05373 1 -----------TTGAAGAGCATTGAAGATTATACGCTTTTAT----CAGC 35
||.| ||.||.|||| |||||| || |
BPUM_3181 1 GTGGCGTATCGTTCA--------GATGACTATA---TTTTATTAACCA-C 38
BSNT_05373 36 TTATTATCATCTTCTTTTTACCATTGAAGAAGGGTTGTGT------TATT 79
.||||||.|.|||||.|||||.||.||||| |.|| ||||
BPUM_3181 39 ATATTATGAACTTCTATTTACGATAGAAGA------GAGTCTAAAATATT 82
BSNT_05373 80 TGATAGAGGCTGAA---GAGA---ATTTATCAAAAACAGAAGGGGATCGG 123
|||| |||| |||| ||||..|.|||||.||||||||||||
BPUM_3181 83 ---TAGA---TGAAATTGAGAAGGATTTTGCTAAAACTGAAGGGGATCGG 126
BSNT_05373 124 ATCTACCAAGATCTGATCCAAGCCTTTTTTTATTTGGATTCAACACATTC 173
||||...|.|||||||||||.|||||.|||.||||.||..||||||||
BPUM_3181 127 ATCTTTAATGATCTGATCCATGCCTTCTTTCATTTAGACACAACACAT-- 174
BSNT_05373 174 AACACTTCT-CTT--CATTATGG---ATTCGCGGTGTGCTGAA---ATTT 214
.|.||||| ||| .|||||.| ||..||..|.|||..|| |||.
BPUM_3181 175 -CCCCTTCTGCTTTCAATTATAGAAAATGAGCACTTTGCCAAAACGATTC 223
BSNT_05373 215 GTGTGAAAGCATTTGACCAAATTTTT----GCGGAGTTTGATCAATTGGT 260
|| .|||||||.||||||||| | .||||||..|.|.|
BPUM_3181 224 GT------TCATTTGATCAAATTTTTTTAAG----TTTTGATATACTAG- 262
BSNT_05373 261 CTCTTTCTCT--TTTCCCTCTCATGA---GTTCTGTGAGTATTTAAAGGA 305
||||||.| .|||||| |||..| .|.|..|.|.|..||||| ..
BPUM_3181 263 --CTTTCTATACATTCCCT-TCAATACACTTCCAATCATTCCTTAAA-TC 308
BSNT_05373 306 ACATTTT----CTGATTCATTATAGAAAATGGAT-GCTGTCTATTCATCA 350
|.||||| ||| |.||||||||.||||| |.|| ..||.|||..
BPUM_3181 309 ATATTTTATACCTG----AATATAGAAAGTGGATGGATG-AAATACATGC 353
BSNT_05373 351 ATGTATGGAACCCTTTTTAATCAATTAG 378
.||||||...||.|.|.|.||..||||.
BPUM_3181 354 CTGTATGAGGCCGTATGTCATTCATTAA 381
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