Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05372 and BPUM_3179

See Amino acid alignment / Visit BSNT_05372 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:59
# Commandline: needle
#    -asequence dna-align/BSNT_05372___yvyD.1.24716.seq
#    -bsequence dna-align/BPUM_3179___raiA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05372___yvyD-BPUM_3179___raiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05372___yvyD-BPUM_3179___raiA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05372___yvyD
# 2: BPUM_3179___raiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 585
# Identity:     436/585 (74.5%)
# Similarity:   436/585 (74.5%)
# Gaps:          36/585 ( 6.2%)
# Score: 1597.5
# 
#
#=======================================

BSNT_05372___      1 ATGAACTATAACATCAGAGGAGAAAATATTGAAGTGACACCCGCGTTAAA     50
                     |||||.||.||..|||||||||||||.||.||.||.|||||.||..|||.
BPUM_3179___r      1 ATGAATTACAATGTCAGAGGAGAAAACATCGACGTAACACCTGCACTAAG     50

BSNT_05372___     51 GGATCATGTCGAGAGGAAGATCGGCAAGCTGGAGCGCTATTTTGACCATA    100
                     .|||||||||||||..||.||.||.|||||||||||.|||||||| .|.|
BPUM_3179___r     51 AGATCATGTCGAGAAAAAAATTGGAAAGCTGGAGCGTTATTTTGA-GACA     99

BSNT_05372___    101 G-CGTGGATGCTGATGTGAACGTCAACTTGAAGTTTTACAATGA-CAAGG    148
                     | |||.||||||...||.|||||.|||||||||||||||||||| ||| |
BPUM_3179___r    100 GACGTAGATGCTTCAGTCAACGTGAACTTGAAGTTTTACAATGATCAA-G    148

BSNT_05372___    149 AGTCTAAGGTTGAGGTTACGATTCCGATGACAGATCTGGCGCTTCGGTCC    198
                     |.|||||.|||||||||||.|||||.|||||.|||||.||.|||||..|.
BPUM_3179___r    149 AATCTAAAGTTGAGGTTACCATTCCAATGACTGATCTAGCACTTCGAGCT    198

BSNT_05372___    199 GAGGTGCATAACGAGGATATGTACAACGCAATTGATCTCGCAACAAACAA    248
                     |||||||||||.||.|||||||||||.|||.|.||.||.|||.|.|..||
BPUM_3179___r    199 GAGGTGCATAATGAAGATATGTACAATGCAGTAGACCTAGCAGCCAGTAA    248

BSNT_05372___    249 ACTGGAACGTCAAATCCGTAAGCATAAAACGAAAGTAAACCGTAAATTCC    298
                     |.|.|||||||||||.||.|||||.|||||.|||||||||||||||||||
BPUM_3179___r    249 ATTAGAACGTCAAATTCGAAAGCACAAAACAAAAGTAAACCGTAAATTCC    298

BSNT_05372___    299 GTGAGCAGGGCTCT-CCAAAA------TATTTATT---GGCAAACGGTCT    338
                     |.|||||.||   | ||||||      |||||..|   ||.||..||.| 
BPUM_3179___r    299 GCGAGCAAGG---TGCCAAAAAGCACTTATTTGCTGGAGGAAATGGGAC-    344

BSNT_05372___    339 TGGCTCTGATACAGATATTGCGGTTCAGGATGACATAGAAGAGGAGGAGA    388
                      ||||        |||.|.||.||||||||||||..||||...||.||.|
BPUM_3179___r    345 -GGCT--------GATGTAGCTGTTCAGGATGACGAAGAAATTGATGAAA    385

BSNT_05372___    389 GCTTGGATATCGTCCGTCAGAAACGCTTTAATTTAAAGCCGATGGATAGT    438
                        ..||.||||||.|.||.|||||.||.||||||||.|||||||||||.
BPUM_3179___r    386 ---CAGAAATCGTCAGACAAAAACGTTTCAATTTAAAACCGATGGATAGC    432

BSNT_05372___    439 GAAGAAGCGATCCTGCAAATGAATATGCTCGGCCATAATTTCTTTGTTTT    488
                     |||||.||.||.||.||||||||.|||.|.||.||||.|||.||.||.||
BPUM_3179___r    433 GAAGAGGCCATTCTTCAAATGAACATGTTAGGTCATAGTTTTTTCGTCTT    482

BSNT_05372___    489 CACAAATGCGGAAACAAACCTTACAAATGTCGTGTACCGCAGAAATGACG    538
                     |||.|||||.||.|||||..|.||.|||||.||.||.|||.|||||||.|
BPUM_3179___r    483 CACTAATGCTGAGACAAATTTGACCAATGTGGTCTATCGCCGAAATGATG    532

BSNT_05372___    539 GGAAATATGGCTTAATTGAACCGA---CTGAATAA    570
                     |.||||||||..|.|||||.||.|   ||.||   
BPUM_3179___r    533 GAAAATATGGACTCATTGAGCCAAACGCTTAA---    564


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