Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04889 and BPUM_3176

See Amino acid alignment / Visit BSNT_04889 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence dna-align/BSNT_04889.1.24716.seq
#    -bsequence dna-align/BPUM_3176___yusX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04889-BPUM_3176___yusX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04889-BPUM_3176___yusX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04889
# 2: BPUM_3176___yusX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2022
# Identity:    1172/2022 (58.0%)
# Similarity:  1172/2022 (58.0%)
# Gaps:         453/2022 (22.4%)
# Score: 3178.5
# 
#
#=======================================

BSNT_04889         1 --------------ATGGCGCTGCAAGGGGTAGGCCAAAGA--TGGGATC     34
                                   ||     |.||||           |||  ||||||.
BPUM_3176___y      1 TTGGGATTAACAACAT-----TACAAG-----------AGACGTGGGATT     34

BSNT_04889        35 TTGATTCATTTTTTAAGGGCGGAAG-------CCAATCGGAAGAATTCAA     77
                     |.|||.|.||||||||.||.||.||       ||       ||.||||||
BPUM_3176___y     35 TAGATGCCTTTTTTAAAGGAGGCAGTTCTTCACC-------AGCATTCAA     77

BSNT_04889        78 AGGTT---------ATATTGAGAAGCTGTCACAAAGTCTGCGTGCATTTC    118
                     |...|         |.||||||.||||.|.|.|         ||.|||  
BPUM_3176___y     78 AACATACTTGCAACACATTGAGCAGCTATTAGA---------TGAATT--    116

BSNT_04889       119 AAGAC---AGGACTGATGCGTTT--CAGGTGCCTGAATCGCCTGAAGAGG    163
                     |.|||   |||.| |||||.|||  ||        ||      |||||..
BPUM_3176___y    117 ACGACAAAAGGTC-GATGCCTTTTCCA--------AA------GAAGATA    151

BSNT_04889       164 C----------------TGAAGGGCTGACCGCGTTGCTTGATT------T    191
                     |                |.||.|.|||           |.|||      |
BPUM_3176___y    152 CACACATTGAAAATAAGTTAACGTCTG-----------TCATTGACACGT    190

BSNT_04889       192 ATTCGAACAGACAT--------CCG--TCAAGC---TTCAGCAGGCCGGC    228
                     ||  |||...||||        |.|  ||||||   ||||          
BPUM_3176___y    191 AT--GAAACCACATATAAAAAACTGTCTCAAGCAGGTTCA----------    228

BSNT_04889       229 GCGTTTGTTGCCTGCCTCCAGGCCCAGAATATCAATGATCAAAAGGCT-A    277
                        |||||..||||.||.||..|.||.||||..||.|||...|||||| .
BPUM_3176___y    229 ---TTTGTATCCTGTCTTCAATCGCAAAATACAAAGGATATGAAGGCTGG    275

BSNT_04889       278 TAGAGCATC-AGGCACTCAT----------GAACCGGCTTT-----CC--    309
                     ||| .|.|| |||.|| .||          |||.|.|.|||     ||  
BPUM_3176___y    276 TAG-TCTTCGAGGTAC-GATTGCTAAGTTGGAAGCTGATTTAGGTACCAT    323

BSNT_04889       310 ----GCAGATTTTCAATC-GTCGCTCGTTAC-ATT------AGATCATAA    347
                         || |.|.||..||| |.||||.|.|.| |||      ||    .||
BPUM_3176___y    324 ACTTGC-GCTGTTTGATCAGGCGCTTGCTGCTATTTCTCCAAG----CAA    368

BSNT_04889       348 ACTTGTGGACGTAGATCAAGACGTGTGGAATGAATTGCTAACAAAACCGG    397
                     |    |||  |.|||||          ..|||||||     ||.|   ||
BPUM_3176___y    369 A----TGG--GAAGATC----------TCATGAATT-----CAGA---GG    394

BSNT_04889       398 GATTAAGAGATATATC-TTACATATTAAATGAAAGAAGACA------GAG    440
                     ..||...||||.| || .|||||||||||||||.|.|||.|      ||.
BPUM_3176___y    395 CCTTTTCAGATGT-TCGCTACATATTAAATGAACGGAGAGACCGCGTGAA    443

BSNT_04889       441 GG-----TTGCC----GAAAAGCTTAGCCCCGGTAAAGAAAAACTGATCG    481
                     ||     |||||    |||               .||||||.|.||||..
BPUM_3176___y    444 GGATCAATTGCCTGTTGAA---------------CAAGAAACATTGATTC    478

BSNT_04889       482 GGAACCTTGCCGTGGACGGATATCACGCTTGGAGTGACTTATACAATA--    529
                     ..||.||.||.||.||.||.|||||.||.|||..|||.||.||...||  
BPUM_3176___y    479 AAAAGCTAGCTGTTGATGGCTATCATGCGTGGGATGATTTTTATTCTAGC    528

BSNT_04889       530 -TGGT---TGTCGGGAAAATGACGATCCCGTATGGGGAAAATGGTGAAAA    575
                      ||||   |      |||||.|||||.||||.||...||.||||||||  
BPUM_3176___y    529 TTGGTAAAT------AAAATTACGATTCCGTTTGAACAACATGGTGAA--    570

BSNT_04889       576 CAAGCAATTG---TCTGTCGGTCAGGCGGAGAATATGATGGACCATCAAG    622
                      |.|||..||   |||||.||.||.|||||.|||...|||||..||..||
BPUM_3176___y    571 -ACGCAGATGATCTCTGTTGGCCAAGCGGAAAATGCAATGGATGATTCAG    619

BSNT_04889       623 ACCGTACTGTCAGAAAAACAGTATATGAACGTTTCCGCC--AAGCTTGGG    670
                     |||||...||||||||..|.||.||            ||  ||.||    
BPUM_3176___y    620 ACCGTGAAGTCAGAAAGGCTGTTTA------------CCATAACCT----    653

BSNT_04889       671 AGAGCAAGCA----------------AGATATTTTCAGCAA-CACGCTGA    703
                     ||||||.|||                |..|||||   |||| ||||||.|
BPUM_3176___y    654 AGAGCATGCATGGACGCAGGATGAACATCTATTT---GCAAGCACGCTCA    700

BSNT_04889       704 ATCATTTGGCGGGATTCCGGCTCGAAACCTATAAGGCGCGTGGCTGGGAG    753
                     ||||||||||.||.||.||..|..||...|||.|.||..|.||||||||.
BPUM_3176___y    701 ATCATTTGGCAGGTTTTCGTTTGCAAGTATATGAAGCAAGAGGCTGGGAT    750

BSNT_04889       754 AATGTCCTGAAGGAACCGCTGCAAATTAACAGGATGAAAAAAGAAACACT    803
                     .||.|..|.||.||.|||||..|.|||..|.||||||||.||||.||.||
BPUM_3176___y    751 CATATTTTAAAAGAGCCGCTTGATATTTGCCGGATGAAACAAGAGACCCT    800

BSNT_04889       804 TGATACGATGTGGCAGGTCATCACTGAAAACAAGAAGCCGTTCGTTCAGT    853
                     ||||.|.||||||...||.||...||||.|.|||.|.||.||..||.|.|
BPUM_3176___y    801 TGATGCCATGTGGTCTGTGATAGATGAACATAAGCAACCATTTATTGATT    850

BSNT_04889       854 TTTTGAACCGGAAAGC--ATCCATGCTCGGCCTTGAAAAACTCAGCTGGT    901
                     ..||..|.||.||.||  ||  |||||.||..|.||.||.||.|||||||
BPUM_3176___y    851 ACTTACATCGAAAGGCTGAT--ATGCTAGGAGTGGATAAGCTAAGCTGGT    898

BSNT_04889       902 ACGATGTCGAGGCACCGATCGGTTCTGACGGA--AAGGTCTATTCGTATG    949
                     ..|||||.|.|||.||.||.|||..|||  ||  |||.|.|||.|||||.
BPUM_3176___y    899 TTGATGTTGGGGCTCCTATTGGTAGTGA--GACCAAGATTTATCCGTATC    946

BSNT_04889       950 ATGAAGCCGCAAATATCATT----ACCAGCCAGTTTTCAAC---GTTTGG    992
                     |.|||||.||...|.|.|||    |.||      |||| .|   ||||||
BPUM_3176___y    947 AGGAAGCAGCGGCTTTTATTGTGAAACA------TTTC-GCTGGGTTTGG    989

BSNT_04889       993 CAAAAAGCTGTCCT-----CATTCACTGAAAAAGCGTTTCGGGACGGCTG   1037
                          |||.|..||     |.||.||.|||||.||.|||...||..||||
BPUM_3176___y    990 -----AGCGGAGCTTGCTGCCTTTACAGAAAAGGCCTTTAATGAACGCTG   1034

BSNT_04889      1038 GATTGAGGCGGAAGACAGGAGCG---GA--AAAAGAGTCGGCGGCTTTTG   1082
                     |.|.||.||.|     ||||.||   ||  |||.||||.|||||.|||||
BPUM_3176___y   1035 GGTAGAAGCTG-----AGGATCGCCCGAACAAACGAGTAGGCGGTTTTTG   1079

BSNT_04889      1083 CACCAGTTTTCCTGACAGCGGGGAATCCCGGATTTTCATGACATTTTCGG   1132
                     .||.|.|||.|||||||||||.||.||.||.|||||.|||||.||.||.|
BPUM_3176___y   1080 TACAAATTTCCCTGACAGCGGAGAGTCGCGTATTTTTATGACCTTCTCAG   1129

BSNT_04889      1133 GCAGCGCCTCAAATGTCTCTACTCTTGCGCATGAACTCGGGCACGCGTTC   1182
                     |.||..|.||.|||||..|.||.||.||||||||.||.||.||..|.|||
BPUM_3176___y   1130 GAAGTCCATCCAATGTGGCGACACTCGCGCATGAGCTTGGTCATTCTTTC   1179

BSNT_04889      1183 CATCAGGAAGCAATGCTCGACGT---CAGGCCGTTAAACCGCTCCTACGC   1229
                     ||||||||||..||||..||.||   ||..|   |.||.|||...||.||
BPUM_3176___y   1180 CATCAGGAAGTGATGCAGGATGTTCGCATTC---TTAATCGCAAATATGC   1226

BSNT_04889      1230 CATGAATGTTGCAGAAACAGCTTCAACGTTTGCAGAGATGATAGTCGCGG   1279
                     .||||||||.||.|||||.||.||.||.||.|||||.|||||.||.||.|
BPUM_3176___y   1227 GATGAATGTCGCTGAAACGGCGTCGACATTCGCAGAAATGATTGTGGCTG   1276

BSNT_04889      1280 ACGCGACTGTCCAGCAGGCCGAGACGAGG-----GAAGAG--------AA   1316
                     |.||..|..|..|        |||.|.||     ||||||        .|
BPUM_3176___y   1277 ATGCTTCATTAAA--------AGAAGCGGCAAATGAAGAGGAACGTCTCA   1318

BSNT_04889      1317 GCTTGTTCTTCTGGAGGATAAAGTGCAAAGAAGTGTTGCGTTCTTCATGA   1366
                     |.||||     |.||||||||..||||..|.|||||.||.||.|||||||
BPUM_3176___y   1319 GTTTGT-----TAGAGGATAAGCTGCAGCGGAGTGTCGCATTTTTCATGA   1363

BSNT_04889      1367 ACATTCA----CGCAAGATTTC-TATTCGAAACGAGATTCTACGAGGAAC   1411
                     |||||||    ||     |||| ||||.|||..|.|.||.||.||.||.|
BPUM_3176___y   1364 ACATTCAATCTCG-----TTTCTTATTTGAACAGCGCTTTTATGAAGAGC   1408

BSNT_04889      1412 GAAAGCGGGGAGTGGTACCGGCCAGCCGCTTGAATGAGCTGATGGAAG-A   1460
                     ||||.|..||||..||.|||||...|||.||||||||||||||||.|| |
BPUM_3176___y   1409 GAAAACAAGGAGAAGTGCCGGCGGACCGTTTGAATGAGCTGATGGTAGCA   1458

BSNT_04889      1461 G-GCACAAAGAGAGGCAT-----ACTGCAATGCGTTAGAAGAATATCATC   1504
                     | |||.||||| ||.|.|     |||      |.|||||.|||||.||||
BPUM_3176___y   1459 GCGCAGAAAGA-AGCCTTTGGCGACT------CATTAGATGAATACCATC   1501

BSNT_04889      1505 CGCTTTTTTGGGCATCAAAACTTCACTTTCACATCACGAGGGTGCCGTTT   1554
                     |||.|||.|||||.||.|||||.||.||.||.||||||.|.||.||||||
BPUM_3176___y   1502 CGCATTTCTGGGCGTCTAAACTGCATTTCCATATCACGGGTGTTCCGTTT   1551

BSNT_04889      1555 TACAATTTCCCTTATACATTCGGCTACCTATTTTCTCTTGGCATTTACGC   1604
                     ||.||||||||.||.|||||.||||||.|.||.||.||.||.|||||.||
BPUM_3176___y   1552 TATAATTTCCCATACACATTTGGCTACATGTTCTCACTAGGGATTTATGC   1601

BSNT_04889      1605 -------------GCTGG-----CGCTTGAAGAAAAA---AATGCAT--T   1631
                                  |||||     ||.|||||||||||   |.|||||  |
BPUM_3176___y   1602 AAAAGCCTTGGAGGCTGGTACTTCGTTTGAAGAAAAATACATTGCATTAT   1651

BSNT_04889      1632 TGAAGAGAAGTATATGGCGCTATTGCGCGATACTGCTTCTATGACAGTGG   1681
                     |.|||                       |||||.|||||.||||||||.|
BPUM_3176___y   1652 TAAAG-----------------------GATACAGCTTCAATGACAGTAG   1678

BSNT_04889      1682 AGGATTTGGCGATGAAGCATTTGGGCG-----CTGACATCACGAAGCGTG   1726
                     |.||||||||..|.|||||.||.||.|     ||.|| .||..||    |
BPUM_3176___y   1679 AAGATTTGGCCTTTAAGCACTTAGGTGTCGATCTTAC-CCAAAAA----G   1723

BSNT_04889      1727 ATTTTTGGGAGAATGCCATCAAGCTGGCTGT-GCGTGACGCCGAAACCTT   1775
                     |||||||||||.|.|||||.|..|||||||| || .||.||.|||...||
BPUM_3176___y   1724 ATTTTTGGGAGGAAGCCATTAGCCTGGCTGTAGC-AGATGCTGAAGAGTT   1772

BSNT_04889      1776 TTTGCAAATGACCGAATCTTAA   1797
                     |||..||..|||..||...|||
BPUM_3176___y   1773 TTTAGAAGCGACGAAAAAGTAA   1794


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