Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05362 and BPUM_3166
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_05362___yvjB.1.24716.seq
# -bsequence dna-align/BPUM_3166.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05362___yvjB-BPUM_3166.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05362___yvjB-BPUM_3166.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05362___yvjB
# 2: BPUM_3166
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1533
# Identity: 1030/1533 (67.2%)
# Similarity: 1030/1533 (67.2%)
# Gaps: 174/1533 (11.4%)
# Score: 3285.0
#
#
#=======================================
BSNT_05362___ 1 ATGAATCAAAAAATAATGGCTGTGATAGCAGC----AGGG--AGCATGCT 44
||.||||||.|| ||.|||.| |.|| || ||..
BPUM_3166 1 ----ATGAAAAAACAA--------ATTGCATCTATTATGGTAAG--TGTC 36
BSNT_05362___ 45 GTTC-----------GGAGGCGCCGGTGTAT--------ATGCGGGAA-T 74
|||| |.||| |||| || |.|.||||| |
BPUM_3166 37 GTTCTACTAATTAGTGCAGG----GGTG-ATGACGCATAAAGAGGGAACT 81
BSNT_05362___ 75 CAACCTGCTTGAGATGGATAAGCCCCAGACTGCAGCAGTTCCCGCGACGG 124
|| ||| || ||.|.|.|...|||||.|||.|.|.|.|.|
BPUM_3166 82 CA---TGC-------GG---AGTCTCCGCAAGCAGCTGTTGCAGTGGCTG 118
BSNT_05362___ 125 CACAAGCTGACTCTGAACGGGATAAAGC------------TATGGACAAA 162
.|||||||.|.|| |.|.|||||.|| .|||||.|||
BPUM_3166 119 GACAAGCTCAATC---AAGTGATAAGGCGAAAGAGAATGGGATGGAGAAA 165
BSNT_05362___ 163 ATCGAAAAAGCGTATGAGTTAATTTCGAATGAGTACGTAGAAAAAGTAGA 212
|||||.|||||.|||||..|.|||||||||||.||.|||||..||||.||
BPUM_3166 166 ATCGAGAAAGCCTATGACCTTATTTCGAATGAATATGTAGAGGAAGTGGA 215
BSNT_05362___ 213 TAGAGAAAAGCTGCTCGAGGGAGCCATCCAGGGAATGCTGTCTACGCTAA 262
|.|..||||||||||.||.||.|||||.||.||||||||.||.||..|||
BPUM_3166 216 TCGTCAAAAGCTGCTGGAAGGCGCCATTCAAGGAATGCTTTCAACTTTAA 265
BSNT_05362___ 263 ATGATCCTTATTCTGTTTACATGGATAAGCAGACAGCTAAGCAATTTTCT 312
|||||||.|||||.||.||||||||.|||||.||.||.||||||||||||
BPUM_3166 266 ATGATCCGTATTCAGTATACATGGACAAGCAAACCGCCAAGCAATTTTCT 315
BSNT_05362___ 313 GATTCTCTTGATTCCTCATTTGAAGGCATCGGGGCTGAGGTTGGCATGGA 362
|||||.||||||||.||.|||||.||.||.|||||.||.||.||.|||||
BPUM_3166 316 GATTCGCTTGATTCTTCTTTTGAGGGAATTGGGGCAGAAGTAGGGATGGA 365
BSNT_05362___ 363 AGACGGCAAAATTATTATTGTTTCCCCATTCAAGAAATCGCCAGCGGAAA 412
.||.||.|||||.|||||.||.||..|.||.||.|||||.||.||.|.||
BPUM_3166 366 TGAAGGAAAAATCATTATCGTCTCTGCCTTTAAAAAATCTCCTGCAGCAA 415
BSNT_05362___ 413 AAGCCGGGTTGAAGCCTAATGATGAAATTATCAGCATCAATGGAGAATCG 462
||||.||..|.|||||.||.||||||||.||||||||..||||.||.|||
BPUM_3166 416 AAGCAGGTCTAAAGCCGAAAGATGAAATCATCAGCATTGATGGTGAGTCG 465
BSNT_05362___ 463 ATGGCCGGCAAGGA------TTTAAACCACGCTGTGTTAAAAATAAGAGG 506
||| ||.|| .|||||..|.|||||..|.|||||.|||||
BPUM_3166 466 ATG------AAAGAAAAAAGCTTAAATGATGCTGTACTGAAAATTAGAGG 509
BSNT_05362___ 507 AAAAAAAGG-------GTCCAGCGTTTCAATGAAGATTCAG-CGGCCT-G 547
.|||||||| ||| || || |||| |.|||| ||...| |
BPUM_3166 510 GAAAAAAGGAACATCCGTC--GC---TC--TGAA-AATCAGACGAAATGG 551
BSNT_05362___ 548 GAACGAAGAAGCAGCTGTCATTCCGGATCAAGAGAGCTGAGATTCCACTC 597
||..|||.||| ||.|..||||||..|||||..|||..||.||.|||||.
BPUM_3166 552 GATTGAAAAAG-AGTTAACATTCCAAATCAAACGAGAAGAAATCCCACTT 600
BSNT_05362___ 598 GAAACGGTTTTTGCATCAGAGAAAAAAGTACAGGGGCATTCTGTCGGATA 647
|||||.||...|.|.||.|.||||.|.|||.|.||.|||......||.||
BPUM_3166 601 GAAACCGTGACTTCCTCTGTGAAAGAGGTAAATGGACATAAAACAGGCTA 650
BSNT_05362___ 648 TATTGCCATCTCTACTTTTTCTGAGCACACCGCAGAGGATTTTGCA---A 694
|||.||.|||||.|..|||||.||..|.||.||..||||||| || .
BPUM_3166 651 TATCGCGATCTCAAGCTTTTCAGAAGATACTGCGAAGGATTT--CACGTC 698
BSNT_05362___ 695 AAGCGCTGAGGGAGCTTGAGAAAAAAGAAATAGAAGGACTTGTCATTGAT 744
|||| ||||...|.||.||||||||.|..||||||||.|||||..|||||
BPUM_3166 699 AAGC-CTGAAACAACTCGAGAAAAAGGGCATAGAAGGTCTTGTGCTTGAT 747
BSNT_05362___ 745 GTACGCGGCAACCCGGGCGGATATCTTCAAAGTGTGGAAGAAATTCTTAA 794
|||.|.||.|||||.|||||.|||||.||||||||.|||||.|||.|.||
BPUM_3166 748 GTAAGAGGAAACCCTGGCGGCTATCTGCAAAGTGTAGAAGATATTTTGAA 797
BSNT_05362___ 795 GCATTTCGTTACAAAGGATCAGCCGTATATTCAGATTGCTGAACGCAATG 844
|||.||..|||||||.|||||.||.||||||||.|||||.||.||.||.|
BPUM_3166 798 GCACTTTATTACAAAAGATCAACCTTATATTCAAATTGCAGAGCGGAACG 847
BSNT_05362___ 845 GGGATAAAAAACGTTATTTTTCAA----CATTGACCCATAAAAAAGCGTA 890
|.||.|..|||||.|||||||||| .|..||.| |.|||.|.||
BPUM_3166 848 GCGACAGGAAACGATATTTTTCAAAGCGGAAGGAAC----AGAAACCTTA 893
BSNT_05362___ 891 CCCTGTCAATGTGATTACGGATAAAGGAAGTGCCTCTGCATCAGAAATTC 940
|||.||.|||||..|.|..||||||||.|||||.||.||.||.|||||.|
BPUM_3166 894 CCCAGTTAATGTCTTAATTGATAAAGGGAGTGCATCCGCTTCTGAAATAC 943
BSNT_05362___ 941 TTGCCGGCGC-ATTAAAGGAAGCTGGCCATTATGATGTTGTAGGCGATAC 989
|.||.||.|| ||.||| |||||.||..|.|||||.||.||.||.|||
BPUM_3166 944 TAGCTGGTGCGATGAAA-GAAGCCGGAAAATATGAAGTCGTCGGTGAT-- 990
BSNT_05362___ 990 GTCT--TTTGGAAAGGGAACGGTTCAACAGGCTGTGCCAATGGGGGACGG 1037
|||| ||.||.||.||.||.||.||.|||||.||.||||||||.|||||
BPUM_3166 991 GTCTCATTCGGGAAAGGCACTGTGCAGCAGGCAGTTCCAATGGGTGACGG 1040
BSNT_05362___ 1038 CAGCAACATCAAATTAACGCTTTACAAGTGGCTGACGCCAAATGGAAACT 1087
|||.|||||.|||||||||||.||.||.|||||.||||||||.|||||.|
BPUM_3166 1041 CAGTAACATTAAATTAACGCTGTATAAATGGCTCACGCCAAAAGGAAATT 1090
BSNT_05362___ 1088 GGATTCATAAGAAAGGAATTGAACCGACCATTGCGATTAAGCAGCCCGAT 1137
|||||||.||.|||||..|.|.|||.||.|||||.|||.|.|||||.|||
BPUM_3166 1091 GGATTCACAAAAAAGGTGTCGTACCAACGATTGCAATTCATCAGCCAGAT 1140
BSNT_05362___ 1138 TATTTTTCCGCCGGGCCTTTACAGCTGAAAGAGCCGCTTAAAGTGGACAT 1187
||.|||.|.|..||.||..|.||.||||||||.||.|||.|..|.||.||
BPUM_3166 1141 TACTTTACTGTAGGACCGCTTCAACTGAAAGAACCACTTCAGCTTGATAT 1190
BSNT_05362___ 1188 GAACAATGAAGACGT----CAAGCATGCGCA---GGTATTGTTAAAAGG- 1229
||||||||||||.|| |||||| || |.|||| |||||
BPUM_3166 1191 GAACAATGAAGAAGTGAGACAAGCA----CAGACGCTATT----AAAGGG 1232
BSNT_05362___ 1230 --TCTCAGCTTTGATCCGGGACGTGAGGATGGCTA-TTTCA-GCAAAGAC 1275
|.||| ||.||.||.||..|.|..||.||||| |||.| | ||||.
BPUM_3166 1233 ATTGTCA--TTCGACCCTGGCAGAGTAGACGGCTACTTTGATG--AAGAA 1278
BSNT_05362___ 1276 ATGAAAAAAGCGGTTATGGCTTTTCAGGATCA-AAACAAGCTGAATAAAA 1324
|.||||||.|||||..|.||.||.|| .|.|| |.||||.||..|||||.
BPUM_3166 1279 ACGAAAAAGGCGGTATTAGCCTTCCA-AAGCACATACAATCTCGATAAAT 1327
BSNT_05362___ 1325 CCGGTGTGATCGACACTCGCACTG----CAGAGACATT-------AAACC 1363
|.|||||.||.||| ||| |||.||.|.| |||..
BPUM_3166 1328 CAGGTGTAATTGAC-------CTGAAGACAGCGAAAATGATGAACAAAAT 1370
BSNT_05362___ 1364 GGCAGATAGAAAAGAAAAAATCAGATGAAAAAAATGATTTGCAGCTTCAA 1413
||..||| |||..| |||||..||||||||||||||.|.||.||.|||
BPUM_3166 1371 GGTGGAT-GAAGTG---AAATCCTATGAAAAAAATGATCTTCAACTGCAA 1416
BSNT_05362___ 1414 ACAGCATTGAAATCATTATTTGTCAATTAA--- 1443
||.|||.|.|||.||.|||.|.|.||..||
BPUM_3166 1417 ACTGCACTAAAAGCACTATATCTTAAAAAATAA 1449
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