Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05362 and BPUM_3166

See Amino acid alignment / Visit BSNT_05362 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:58
# Commandline: needle
#    -asequence dna-align/BSNT_05362___yvjB.1.24716.seq
#    -bsequence dna-align/BPUM_3166.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05362___yvjB-BPUM_3166.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05362___yvjB-BPUM_3166.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05362___yvjB
# 2: BPUM_3166
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1533
# Identity:    1030/1533 (67.2%)
# Similarity:  1030/1533 (67.2%)
# Gaps:         174/1533 (11.4%)
# Score: 3285.0
# 
#
#=======================================

BSNT_05362___      1 ATGAATCAAAAAATAATGGCTGTGATAGCAGC----AGGG--AGCATGCT     44
                         ||.||||||.||        ||.|||.|    |.||  ||  ||..
BPUM_3166          1 ----ATGAAAAAACAA--------ATTGCATCTATTATGGTAAG--TGTC     36

BSNT_05362___     45 GTTC-----------GGAGGCGCCGGTGTAT--------ATGCGGGAA-T     74
                     ||||           |.|||    |||| ||        |.|.||||| |
BPUM_3166         37 GTTCTACTAATTAGTGCAGG----GGTG-ATGACGCATAAAGAGGGAACT     81

BSNT_05362___     75 CAACCTGCTTGAGATGGATAAGCCCCAGACTGCAGCAGTTCCCGCGACGG    124
                     ||   |||       ||   ||.|.|.|...|||||.|||.|.|.|.|.|
BPUM_3166         82 CA---TGC-------GG---AGTCTCCGCAAGCAGCTGTTGCAGTGGCTG    118

BSNT_05362___    125 CACAAGCTGACTCTGAACGGGATAAAGC------------TATGGACAAA    162
                     .|||||||.|.||   |.|.|||||.||            .|||||.|||
BPUM_3166        119 GACAAGCTCAATC---AAGTGATAAGGCGAAAGAGAATGGGATGGAGAAA    165

BSNT_05362___    163 ATCGAAAAAGCGTATGAGTTAATTTCGAATGAGTACGTAGAAAAAGTAGA    212
                     |||||.|||||.|||||..|.|||||||||||.||.|||||..||||.||
BPUM_3166        166 ATCGAGAAAGCCTATGACCTTATTTCGAATGAATATGTAGAGGAAGTGGA    215

BSNT_05362___    213 TAGAGAAAAGCTGCTCGAGGGAGCCATCCAGGGAATGCTGTCTACGCTAA    262
                     |.|..||||||||||.||.||.|||||.||.||||||||.||.||..|||
BPUM_3166        216 TCGTCAAAAGCTGCTGGAAGGCGCCATTCAAGGAATGCTTTCAACTTTAA    265

BSNT_05362___    263 ATGATCCTTATTCTGTTTACATGGATAAGCAGACAGCTAAGCAATTTTCT    312
                     |||||||.|||||.||.||||||||.|||||.||.||.||||||||||||
BPUM_3166        266 ATGATCCGTATTCAGTATACATGGACAAGCAAACCGCCAAGCAATTTTCT    315

BSNT_05362___    313 GATTCTCTTGATTCCTCATTTGAAGGCATCGGGGCTGAGGTTGGCATGGA    362
                     |||||.||||||||.||.|||||.||.||.|||||.||.||.||.|||||
BPUM_3166        316 GATTCGCTTGATTCTTCTTTTGAGGGAATTGGGGCAGAAGTAGGGATGGA    365

BSNT_05362___    363 AGACGGCAAAATTATTATTGTTTCCCCATTCAAGAAATCGCCAGCGGAAA    412
                     .||.||.|||||.|||||.||.||..|.||.||.|||||.||.||.|.||
BPUM_3166        366 TGAAGGAAAAATCATTATCGTCTCTGCCTTTAAAAAATCTCCTGCAGCAA    415

BSNT_05362___    413 AAGCCGGGTTGAAGCCTAATGATGAAATTATCAGCATCAATGGAGAATCG    462
                     ||||.||..|.|||||.||.||||||||.||||||||..||||.||.|||
BPUM_3166        416 AAGCAGGTCTAAAGCCGAAAGATGAAATCATCAGCATTGATGGTGAGTCG    465

BSNT_05362___    463 ATGGCCGGCAAGGA------TTTAAACCACGCTGTGTTAAAAATAAGAGG    506
                     |||      ||.||      .|||||..|.|||||..|.|||||.|||||
BPUM_3166        466 ATG------AAAGAAAAAAGCTTAAATGATGCTGTACTGAAAATTAGAGG    509

BSNT_05362___    507 AAAAAAAGG-------GTCCAGCGTTTCAATGAAGATTCAG-CGGCCT-G    547
                     .||||||||       |||  ||   ||  |||| |.|||| ||...| |
BPUM_3166        510 GAAAAAAGGAACATCCGTC--GC---TC--TGAA-AATCAGACGAAATGG    551

BSNT_05362___    548 GAACGAAGAAGCAGCTGTCATTCCGGATCAAGAGAGCTGAGATTCCACTC    597
                     ||..|||.||| ||.|..||||||..|||||..|||..||.||.|||||.
BPUM_3166        552 GATTGAAAAAG-AGTTAACATTCCAAATCAAACGAGAAGAAATCCCACTT    600

BSNT_05362___    598 GAAACGGTTTTTGCATCAGAGAAAAAAGTACAGGGGCATTCTGTCGGATA    647
                     |||||.||...|.|.||.|.||||.|.|||.|.||.|||......||.||
BPUM_3166        601 GAAACCGTGACTTCCTCTGTGAAAGAGGTAAATGGACATAAAACAGGCTA    650

BSNT_05362___    648 TATTGCCATCTCTACTTTTTCTGAGCACACCGCAGAGGATTTTGCA---A    694
                     |||.||.|||||.|..|||||.||..|.||.||..|||||||  ||   .
BPUM_3166        651 TATCGCGATCTCAAGCTTTTCAGAAGATACTGCGAAGGATTT--CACGTC    698

BSNT_05362___    695 AAGCGCTGAGGGAGCTTGAGAAAAAAGAAATAGAAGGACTTGTCATTGAT    744
                     |||| ||||...|.||.||||||||.|..||||||||.|||||..|||||
BPUM_3166        699 AAGC-CTGAAACAACTCGAGAAAAAGGGCATAGAAGGTCTTGTGCTTGAT    747

BSNT_05362___    745 GTACGCGGCAACCCGGGCGGATATCTTCAAAGTGTGGAAGAAATTCTTAA    794
                     |||.|.||.|||||.|||||.|||||.||||||||.|||||.|||.|.||
BPUM_3166        748 GTAAGAGGAAACCCTGGCGGCTATCTGCAAAGTGTAGAAGATATTTTGAA    797

BSNT_05362___    795 GCATTTCGTTACAAAGGATCAGCCGTATATTCAGATTGCTGAACGCAATG    844
                     |||.||..|||||||.|||||.||.||||||||.|||||.||.||.||.|
BPUM_3166        798 GCACTTTATTACAAAAGATCAACCTTATATTCAAATTGCAGAGCGGAACG    847

BSNT_05362___    845 GGGATAAAAAACGTTATTTTTCAA----CATTGACCCATAAAAAAGCGTA    890
                     |.||.|..|||||.||||||||||    .|..||.|    |.|||.|.||
BPUM_3166        848 GCGACAGGAAACGATATTTTTCAAAGCGGAAGGAAC----AGAAACCTTA    893

BSNT_05362___    891 CCCTGTCAATGTGATTACGGATAAAGGAAGTGCCTCTGCATCAGAAATTC    940
                     |||.||.|||||..|.|..||||||||.|||||.||.||.||.|||||.|
BPUM_3166        894 CCCAGTTAATGTCTTAATTGATAAAGGGAGTGCATCCGCTTCTGAAATAC    943

BSNT_05362___    941 TTGCCGGCGC-ATTAAAGGAAGCTGGCCATTATGATGTTGTAGGCGATAC    989
                     |.||.||.|| ||.||| |||||.||..|.|||||.||.||.||.|||  
BPUM_3166        944 TAGCTGGTGCGATGAAA-GAAGCCGGAAAATATGAAGTCGTCGGTGAT--    990

BSNT_05362___    990 GTCT--TTTGGAAAGGGAACGGTTCAACAGGCTGTGCCAATGGGGGACGG   1037
                     ||||  ||.||.||.||.||.||.||.|||||.||.||||||||.|||||
BPUM_3166        991 GTCTCATTCGGGAAAGGCACTGTGCAGCAGGCAGTTCCAATGGGTGACGG   1040

BSNT_05362___   1038 CAGCAACATCAAATTAACGCTTTACAAGTGGCTGACGCCAAATGGAAACT   1087
                     |||.|||||.|||||||||||.||.||.|||||.||||||||.|||||.|
BPUM_3166       1041 CAGTAACATTAAATTAACGCTGTATAAATGGCTCACGCCAAAAGGAAATT   1090

BSNT_05362___   1088 GGATTCATAAGAAAGGAATTGAACCGACCATTGCGATTAAGCAGCCCGAT   1137
                     |||||||.||.|||||..|.|.|||.||.|||||.|||.|.|||||.|||
BPUM_3166       1091 GGATTCACAAAAAAGGTGTCGTACCAACGATTGCAATTCATCAGCCAGAT   1140

BSNT_05362___   1138 TATTTTTCCGCCGGGCCTTTACAGCTGAAAGAGCCGCTTAAAGTGGACAT   1187
                     ||.|||.|.|..||.||..|.||.||||||||.||.|||.|..|.||.||
BPUM_3166       1141 TACTTTACTGTAGGACCGCTTCAACTGAAAGAACCACTTCAGCTTGATAT   1190

BSNT_05362___   1188 GAACAATGAAGACGT----CAAGCATGCGCA---GGTATTGTTAAAAGG-   1229
                     ||||||||||||.||    ||||||    ||   |.||||    ||||| 
BPUM_3166       1191 GAACAATGAAGAAGTGAGACAAGCA----CAGACGCTATT----AAAGGG   1232

BSNT_05362___   1230 --TCTCAGCTTTGATCCGGGACGTGAGGATGGCTA-TTTCA-GCAAAGAC   1275
                       |.|||  ||.||.||.||..|.|..||.||||| |||.| |  ||||.
BPUM_3166       1233 ATTGTCA--TTCGACCCTGGCAGAGTAGACGGCTACTTTGATG--AAGAA   1278

BSNT_05362___   1276 ATGAAAAAAGCGGTTATGGCTTTTCAGGATCA-AAACAAGCTGAATAAAA   1324
                     |.||||||.|||||..|.||.||.|| .|.|| |.||||.||..|||||.
BPUM_3166       1279 ACGAAAAAGGCGGTATTAGCCTTCCA-AAGCACATACAATCTCGATAAAT   1327

BSNT_05362___   1325 CCGGTGTGATCGACACTCGCACTG----CAGAGACATT-------AAACC   1363
                     |.|||||.||.|||       |||    |||.||.|.|       |||..
BPUM_3166       1328 CAGGTGTAATTGAC-------CTGAAGACAGCGAAAATGATGAACAAAAT   1370

BSNT_05362___   1364 GGCAGATAGAAAAGAAAAAATCAGATGAAAAAAATGATTTGCAGCTTCAA   1413
                     ||..||| |||..|   |||||..||||||||||||||.|.||.||.|||
BPUM_3166       1371 GGTGGAT-GAAGTG---AAATCCTATGAAAAAAATGATCTTCAACTGCAA   1416

BSNT_05362___   1414 ACAGCATTGAAATCATTATTTGTCAATTAA---   1443
                     ||.|||.|.|||.||.|||.|.|.||..||   
BPUM_3166       1417 ACTGCACTAAAAGCACTATATCTTAAAAAATAA   1449


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