Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05360 and BPUM_3163
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_05360___minJ.1.24716.seq
# -bsequence dna-align/BPUM_3163.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05360___minJ-BPUM_3163.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05360___minJ-BPUM_3163.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05360___minJ
# 2: BPUM_3163
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1351
# Identity: 797/1351 (59.0%)
# Similarity: 797/1351 (59.0%)
# Gaps: 320/1351 (23.7%)
# Score: 2115.5
#
#
#=======================================
BSNT_05360___ 1 -----------GTGTCTGTTCAATGGGGAATTGAACTG--TTAAAAAGCG 37
||| .|||| ||.||| || |||||||
BPUM_3163 1 ATGAGCTCGGAGTG-------GATGG------GAGCTGGATT-AAAAGCG 36
BSNT_05360___ 38 --CGGGCTTGTTCTTCTTACACCCGCTTTTCTGGTTTTTTATCATCATA- 84
|||.| ||||.||..|.|||||.||| ||||.|.||||.|||
BPUM_3163 37 GTCGGTC-TGTTTTTAATCCACCCTCTT------TTTTATTTCATGATAT 79
BSNT_05360___ 85 -----ACCCTGGCTTTC--GGCTATGTAAGAATCAAACGGGAACGAAAAA 127
|.|||| ||.| |||||..|..|..|.||.|||||..|||||.
BPUM_3163 80 TAATCAGCCTG--TTACATGGCTACATCCGCGTAAAGCGGGAGAGAAAAG 127
BSNT_05360___ 128 CCTTTCATACAAGAATAGCAGATATTTATGATGATCTGAAATTTACATAT 177
|.|||||.||.|||||||.||||.|.||.|||||.||.||||||||||||
BPUM_3163 128 CGTTTCAAACGAGAATAGAAGATGTATACGATGAACTTAAATTTACATAT 177
BSNT_05360___ 178 ACAAAGGGACTGATTCCAGGTCTTCTTTTG----TCAGTTATTTTAGGTG 223
.||||.|||..|||||.||| ..|||| ||..||||||.||
BPUM_3163 178 TCAAAAGGATGGATTCTAGG----AATTTGCCTATCGATTATTTCAG--- 220
BSNT_05360___ 224 GACTCGGAATATCGATT--CCTCTCGGTTTACTTGCGATT-ATTGCCGTT 270
|.||..||..|||| ||||.|| |.|| |||| || |||.
BPUM_3163 221 ---TAGGCTTAGGGATTGCCCTCCCG-----CCTG-GATTCAT---CGTG 258
BSNT_05360___ 271 ATCACTGCAGCG----GCAGCGTTCACTCTT----------CGCGCAAAC 306
||.|.||||||| .||.||||..||||| .||| |.
BPUM_3163 259 ATGATTGCAGCGATGACCATCGTTTTCTCTTTATTCTTTAAGGCG---AG 305
BSNT_05360___ 307 TG-GATGTCTGCTGCATATA---TCG---TCAGTGTGAGTAT------GC 343
|| |.|.||..|||||||.| ||| |||||.| ||| ||
BPUM_3163 306 TGCGCTTTCGTCTGCATACACACTCGGTTTCAGTTT---TATTGCGGCGC 352
BSNT_05360___ 344 TGATAGGTTTTGGACTG---------CAAATATATCAGGCGGAGCCCTTC 384
||||.||| |||.| |||||.|||
BPUM_3163 353 ---------TTGGCCTGTTGTATTTCCAAGT----------GAGCCATTC 383
BSNT_05360___ 385 CTAGAGAGATTTCCG-------CAAGGAT--TTGCAGTTGTTTGGCCGGC 425
.| |..|.||| |||.||| .|||| .|.||
BPUM_3163 384 AT-----GGCTGCCGCAGCTCTCAATGATGAATGCA---------TCAGC 419
BSNT_05360___ 426 TGTGGCTGTGTTTCTAGGT-TTGCTGATTATCACTGAAGGAGCGG----T 470
.||.|.|.|.||.|||||| || ||||.|.|||..|||.|| |
BPUM_3163 420 CGTTGTTATTTTGCTAGGTCTT-----TTATTAATGACCGAGGGGATTCT 464
BSNT_05360___ 471 TGCTTATCGTTCTGCGCATGTGAGAACATCACCGGCACTTGTCGTAAGCA 520
.||.|||||..|.||.|||.|..|||||||.||.|||.|.||..|.||
BPUM_3163 465 AGCCTATCGAACGGCACATTTACGAACATCGCCTGCAATGGTGATGAG-- 512
BSNT_05360___ 521 GCCGCG-------GTTTGCCGATCGGACAGCAGCTGGCAAACCGGGTTTG 563
.||| .||| |||.||.|||||||.|||||||||..|.||
BPUM_3163 513 --TGCGAGAGGACTTTT---GATTGGCCAGCAGCGGGCAAACCGCCTATG 557
BSNT_05360___ 564 GCTTTTGCCGC-TGTTCCTT-CTCGTGCCCGGTAATGGTTTAGAATCGCA 611
||||||.|||| |||| || ||..|| ||||.| ||| ||||
BPUM_3163 558 GCTTTTACCGCTTGTT--TTGCTGATG-CCGGCA--GGT---GAAT---- 595
BSNT_05360___ 612 CCTTA----------GC--TGGTGGCCCGTGTTTACGGTTCCCG------ 643
||| || ||||||||.|||.||...||.|.||
BPUM_3163 596 --TTACTTCTTCTCTGCCATGGTGGCCAGTGCTTCAAGTGCACGATCAAA 643
BSNT_05360___ 644 GCGGCTCATTCCATTTTCTATGGATTCCTTACTTTGTCGGATTTGGACAA 693
||...||||| .||||| ||||||.|||.||.||||.|||||.||.
BPUM_3163 644 GCTTTTCATT-TATTTT-----GATTCCATACATTCTCGGTTTTGGGCAG 687
BSNT_05360___ 694 AGGGTACAGGGATCGCTGCCTGAAACG--AGTAT--AAGGATCACAGCGA 739
.||.|.||.|||||.||||| ||..| ||.|| || ||.|||||
BPUM_3163 688 CGGATTCAAGGATCACTGCC--AATTGTTAGCATTCAA--ATTACAGC-- 731
BSNT_05360___ 740 AAC-GCGTTTGTATTCTC------GGTCTTGCCGTCGCAGTTCTCGGTGC 782
|| || |||||||| ||.||.|..||.||..|.||.|||||
BPUM_3163 732 -ACGGC----GTATTCTCATGCTTGGGCTCGTGGTTGCTTTACTAGGTGC 776
BSNT_05360___ 783 AGCGAGCTTACTGTG----GACGCCGCTTGCAGGTGCAGCGGTCTGTACT 828
.||.|| || |.|| || ||||.|||||.|.|.|| |||||
BPUM_3163 777 TGCAAG--TA-TTTGGTTTGA-GCCGATTGCATGGGGAG----CTGTA-- 816
BSNT_05360___ 829 GCTTTGTTAGGGCGTATT-----------TTTCTGTCCAT--AAAGCAAA 865
||..|||.| ||| ||||..|.||| ||| ||.|
BPUM_3163 817 ---TTCATAGCG---ATTGCCGGAAGAGCTTTCCTTTCATGGAAA-CAGA 859
BSNT_05360___ 866 GAGTGAATGATAACGCGGCTCCGTTTTATTTCTCGAAAAGGGATC-AGGG 914
||||.||.||.||.||||||||.||.||.|||||.|||.|..||| ||||
BPUM_3163 860 GAGTCAACGACAATGCGGCTCCATTCTACTTCTCTAAACGTAATCAAGGG 909
BSNT_05360___ 915 CTTAATGGTGCTTGGGATTATCCCCAATACGCCGGCTGAGGATCTGGAAT 964
| ||||||||||.||.||.||.||.|||||.||.|| |.||| ||
BPUM_3163 910 C-TAATGGTGCTCGGAATCATTCCGAATACACCTGC-----AGCTG--AT 951
BSNT_05360___ 965 TGAAA-------ATCGGGGAAATCATAACGAAAGTCAATGGTATACCGGT 1007
|.||| |||||.|||.||||.||.||.||.|||||.|||...||
BPUM_3163 952 TTAAAGCTTGAGATCGGAGAAGTCATTACAAAGGTGAATGGAATAGAAGT 1001
BSNT_05360___ 1008 TAAGAACGTTTCTGATTTCTATGAAGCGCTCCAGCATAACCGTGCATACG 1057
.||.|.||||||.||.||.||.|||||.||.|| ||| ||..||
BPUM_3163 1002 CAAAACCGTTTCGGAATTTTACGAAGCCCTTCA----AAC----CAATCG 1043
BSNT_05360___ 1058 TG--------AAGCTTGAAATTATCGGTTTGAATGG--AGA-AATTCGTT 1096
|| ||||||||.||.||.||.|||||||| ||| || |.|
BPUM_3163 1044 TGCTCTGACAAAGCTTGAGATCATTGGCTTGAATGGTCAGACAA---GGT 1090
BSNT_05360___ 1097 TTGACCAGCGAGCTTCTTATGAAGGAGAACATCATGAATTGGGCATCCTC 1146
||||..|.||.||||||||.|||||.||.||||||.|..|.||||||||.
BPUM_3163 1091 TTGAGAAACGCGCTTCTTACGAAGGGGAGCATCATCAGCTTGGCATCCTG 1140
BSNT_05360___ 1147 TTCGTAAAGGATGACCGTGAAGACGAAGCAGCCGC---TTCTGGATCATA 1193
||.||.||||||||.|...|..|.|||.||.|.|| ||| ||||||
BPUM_3163 1141 TTTGTGAAGGATGATCCACAGCAAGAATCAACGGCGATTTC---ATCATA 1187
BSNT_05360___ 1194 A 1194
|
BPUM_3163 1188 A 1188
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