Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05355 and BPUM_3151

See Amino acid alignment / Visit BSNT_05355 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:58
# Commandline: needle
#    -asequence dna-align/BSNT_05355___yvkC.1.24716.seq
#    -bsequence dna-align/BPUM_3151___ppsA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05355___yvkC-BPUM_3151___ppsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05355___yvkC-BPUM_3151___ppsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05355___yvkC
# 2: BPUM_3151___ppsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2827
# Identity:    1628/2827 (57.6%)
# Similarity:  1628/2827 (57.6%)
# Gaps:         626/2827 (22.1%)
# Score: 4039.5
# 
#
#=======================================

BSNT_05355___      1 ATGTATTCTGTTTTATTTC--GCCAGGCAGAAGAGTCCAGC--CAGCTGG     46
                     ||||||||.||||||||||  ||  |||.|||||.||| ||  || ||.|
BPUM_3151___p      1 ATGTATTCAGTTTTATTTCATGC--GGCTGAAGAATCC-GCATCA-CTCG     46

BSNT_05355___     47 CTGGAGCAAAAGGAATGAATTTGATTAAATTGACCAAACACGGTCTTCCT     96
                     |.||.||||||||..|||||||.||.|||||.|.|||.|||||.||.||.
BPUM_3151___p     47 CAGGGGCAAAAGGCCTGAATTTAATCAAATTAAACAATCACGGCCTGCCA     96

BSNT_05355___     97 GTTCCGGACGGGTTTATTATTCAAACGAA------TGC--GCTCGCACGT    138
                     ||.||.||.||.||||||||..||||.||      |.|  |||..|   |
BPUM_3151___p     97 GTCCCAGATGGATTTATTATCAAAACCAACAGCTTTTCAAGCTTTC---T    143

BSNT_05355___    139 TTTATGGAGGACAACCAGCTTC------AAGAGA--CTAG-TGAAAACGT    179
                     ||.||  |..||||||.||.||      ||.|.|  ||.| |||.||..|
BPUM_3151___p    144 TTCAT--ATCACAACCTGCATCCAACTGAACAAAACCTTGCTGACAAAAT    191

BSNT_05355___    180 CGAAAGCGGGATCATTTCTGGAACATTTTCGGATG--AGCTGAAAGATGA    227
                     | ||||..|.|||.|||      |.||.||..|||  |||.||       
BPUM_3151___p    192 C-AAAGAAGCATCGTTT------CCTTCTCAAATGGAAGCAGA-------    227

BSNT_05355___    228 GCTGACTAGT----TCCTTTTATAAGC-TTA--GAGAATCATATCGATCC    270
                         |||..|    ||||||  .||.| |||  || ||.|.||||..||.
BPUM_3151___p    228 ----ACTTCTTTCGTCCTTT--CAATCATTACGGA-AAACTTATCCCTCA    270

BSNT_05355___    271 GTAGCCGTGCGTTCTTCGTCTGCTTCGGAAGATTTAGAAGGCGCCTCATT    320
                     ||.||.||..|.||.||.||||.|.|.||||||.|.||||||||||||||
BPUM_3151___p    271 GTTGCAGTCAGATCCTCTTCTGTTGCAGAAGATCTCGAAGGCGCCTCATT    320

BSNT_05355___    321 CGCGGGTCAATATGAAACCTACTTAAATATCAAAACAGAGGAAGAGTTTC    370
                     .||.||.||.||.||.|||||.|||||||||||||||||.||||| .|||
BPUM_3151___p    321 TGCAGGACAGTACGAGACCTATTTAAATATCAAAACAGATGAAGA-ATTC    369

BSNT_05355___    371 T----GGCTAAAGTGAAAGAATGCTGGGCCTCATTTTTTTCTGGGCGGGT    416
                     |    ||||   ||.||||||||.|||.|.||.|..|||...|.|.|.||
BPUM_3151___p    370 TTACAGGCT---GTCAAAGAATGTTGGTCTTCTTACTTTGGAGTGAGAGT    416

BSNT_05355___    417 --CAGCAGCTATAAGAAAAAAATGAACAATCAAATCGCAGA------GCC    458
                       ||| || ||||||.||.|.|||   .||.|||.||..||      |||
BPUM_3151___p    417 AACAG-AG-TATAAGGAAGAGATG---GATGAAAACGAGGAAGAGATGCC    461

BSNT_05355___    459 GTTAATGGGAATAGTCGTTCAGGGGCTGATCGATTCAGAAATGTCAGGTG    508
                     |.|.||||...|.||||||||.||..|||||.||||.||..|.||.||||
BPUM_3151___p    462 GCTCATGGCTGTTGTCGTTCAAGGATTGATCCATTCTGATGTCTCCGGTG    511

BSNT_05355___    509 TTATCTTCAGCCGCAACCCTGTTA--CCCAT-------------GATGAT    543
                     |.|||||.||         ||..|  |||||             .|||| 
BPUM_3151___p    512 TCATCTTTAG---------TGAGAATCCCATAACAGGAAAAACAAATGA-    551

BSNT_05355___    544 AGAGAGCTTTTAATCA-GC-----GCCAGCTACGGGTTGGGTGAAGCTGT    587
                                |||.| ||     ||.||||||||..|.||.|||||..|
BPUM_3151___p    552 -----------AATGATGCTGACAGCAAGCTACGGACTAGGAGAAGCAAT    590

BSNT_05355___    588 TGTTTCAGGAAGTGTTACCCCAGACACGTTCATTGTTA---ATAAA----    630
                     .|||||.||...|||.||.||||||||.|   ||||||   |.|||    
BPUM_3151___p    591 CGTTTCCGGGCTTGTGACACCAGACACAT---TTGTTATAGACAAAGAGA    637

BSNT_05355___    631 ---TCTTCGTTTG-AGATTCA----GAAAGAAATAGGTGCAAAGGAAATC    672
                        | |||..||| |.|.|||    |||.||||.||.||||    ||.||
BPUM_3151___p    638 CACT-TTCTATTGAAAAATCACTTGGAACGAAAGAGCTGCA----AATTC    682

BSNT_05355___    673 TACATGGAGTCTGCGGC-AGAAGGAATTGCTGAAAAAGAAACGAGTGAAG    721
                     |.|.|    |.|    | ||||||..|...||||.|||.|..||..||.|
BPUM_3151___p    683 TTCCT----TAT----CAAGAAGGTGTCATTGAACAAGCAGTGACGGAGG    724

BSNT_05355___    722 ACATGCGCAGCCGT---TTTTGCCTTACAGATGAACAAGTGATTGAATTG    768
                     |.||| ||.|  ||   ||||||||.|..|||||.|||.|..|.|||.|.
BPUM_3151___p    725 AAATG-GCTG--GTCAGTTTTGCCTGAATGATGACCAACTAGTAGAAATC    771

BSNT_05355___    769 GCTGAAATCACAAAAAAAACCGAAGACCTGTACGG--ATATCCTGTCGAT    816
                     .|..|.|||||.|||.||...||||..||.||.||  |||.|  ||||||
BPUM_3151___p    772 ACGCACATCACCAAACAAGTAGAAGCACTTTATGGTCATAGC--GTCGAT    819

BSNT_05355___    817 ATAGAATTTGGAATTGCTGAT----CATCAAATATACCTTCTGCAAGCTC    862
                     ||.||||||||.||.||..||    |||    |.||..|.||.|||||..
BPUM_3151___p    820 ATCGAATTTGGGATAGCAAATGGCACAT----TTTATTTACTTCAAGCCA    865

BSNT_05355___    863 GCCCGATTACAACCATTGATCAG----GACAAAAAGGCGGCAGAAGAA--    906
                     |.||||||||        ..|||    ..|||||  ||.|||||.|||  
BPUM_3151___p    866 GACCGATTAC--------CGCAGCTCTCTCAAAA--GCAGCAGATGAAAC    905

BSNT_05355___    907 -----------------AAACGCAGCTTCATGATTACCGACACTGATATG    939
                                      |||.|||||          |.|||   ||..||
BPUM_3151___p    906 AGTAGGGGCTTCTTTTCAAATGCAGC----------CAGAC---GAGCTG    942

BSNT_05355___    940 AATGATTTCTGG--CTTAACATGGAGTCTAATATTGAAGGTCCGGTGAGT    987
                     .|.|||||||||  ||.|  |||||...|.||||....|||||....|||
BPUM_3151___p    943 CAGGATTTCTGGATCTCA--ATGGACGATCATATGCCGGGTCCAACAAGT    990

BSNT_05355___    988 CCGTTATTTTCA--TCCTTCATCGTGCCGGCATTGGAATATGGCTTGAAG   1035
                     ||..|.||||||  ||  |.|||.|.||.|||||..||...||..|||||
BPUM_3151___p    991 CCTCTCTTTTCAAGTC--TGATCATCCCAGCATTAAAAAGCGGTATGAAG   1038

BSNT_05355___   1036 AAGAGCATG-----CAA----AAGTTTCCGATTGGTGTAGTTGTTGATGA   1076
                     ||.|  |||     .||    ||||..|.|||..|..||    ||.|.||
BPUM_3151___p   1039 AAAA--ATGGTGAAAAATATCAAGTGCCTGATCTGAATA----TTAAAGA   1082

BSNT_05355___   1077 AGTAAAACTTTATCGCGGACATATTTATTCCAAAAACC-----------A   1115
                     ..|.||.||.|||.|.||||||.|.|||||  |..|||           |
BPUM_3151___p   1083 TATCAAGCTCTATAGAGGACATCTGTATTC--ATCACCGTCACTGCCTGA   1130

BSNT_05355___   1116 AG---GTGGACAGCAGCC--TCC---TTCTGAAGACTGCGGCAAA-----   1152
                     ||   |||  |||.||||  .||   ||.|||.|        |||     
BPUM_3151___p   1131 AGCGAGTG--CAGAAGCCGTACCAGTTTTTGATG--------AAAGCTTA   1170

BSNT_05355___   1153 ---GAGCTTTTCCCGATTTTATCGGAGCATATGTATGACATCATCAATCA   1199
                        |||.|.||.|||..|.||...||||.|||||||||.||..|..|..|
BPUM_3151___p   1171 TTTGAGTTATTTCCGCATCTAAGTGAGCGTATGTATGAAATTTTAGAGAA   1220

BSNT_05355___   1200 CACATACCTCCCTTTTTACCGGACA--CTGGACCAGCTCGCACA------   1241
                     .|..|.|.|.|||||||||  ||.|  |||||     ||.||.|      
BPUM_3151___p   1221 AAATTTCTTTCCTTTTTAC--GAAAAGCTGGA-----TCTCAAAATAAAG   1263

BSNT_05355___   1242 -AAC---TGAGCATACCGCAGAA------AGCGCACTGGATGCTTTTC-A   1280
                      |||   |||.|||  .|.||||      |.||        ||  ||| |
BPUM_3151___p   1264 GAACCGATGACCAT--TGAAGAAGCCATCATCG--------GC--TTCGA   1301

BSNT_05355___   1281 AAAACTAAAGGCCTTTTATCTCAC-GGCTTATGAAGAGCACTTCAATATC   1329
                     |.||.||||.||.||||||.| || .||.|||||.||.||.||..||||.
BPUM_3151___p   1302 AGAATTAAAAGCTTTTTATAT-ACAAGCATATGATGATCATTTTGATATT   1350

BSNT_05355___   1330 GTTTTCCCGCAAATCCTTTTAACA----------AACAAACTGCAAGCGA   1369
                     ||..||||.|||.||.|||||.||          ||.|.| |||..|.||
BPUM_3151___p   1351 GTCATCCCTCAAGTCATTTTATCAGCTATGATTGAAGATA-TGCTTGTGA   1399

BSNT_05355___   1370 TGTAT-CAGG---ACATTCA-AGGAGAGTCCGAAAACGCT-CATTTTTAT   1413
                     .|||| |.||   .||.||| |.|.|| |||.|     || |      ||
BPUM_3151___p   1400 CGTATACTGGTGATCAATCACAAGTGA-TCCTA-----CTGC------AT   1437

BSNT_05355___   1414 GAGATGCTGACAGGAAAAATGAACAAATCACTGGAAACGGACCGTTGCTT   1463
                     ||||||.|||.|||....|||||.||||||||.|||||.||        |
BPUM_3151___p   1438 GAGATGATGATAGGCGTGATGAATAAATCACTTGAAACAGA--------T   1479

BSNT_05355___   1464 ATG--GCTATTTTCTATGG--AAG-------TTCAGGAGAACCCGAACCT   1502
                     |.|  |||||.|..|.|.|  |||       ||||.||.||  .||||.|
BPUM_3151___p   1480 AAGAAGCTATCTGATTTTGCAAAGAGTGTCCTTCAAGATAA--AGAACTT   1527

BSNT_05355___   1503 TCT-GACCATTTTTGAAAACAACAAGCCTGAACAGCTCCAGGAGAAATT-   1550
                     |.| .|.|||||.|  ||||||      ||||.||          |||| 
BPUM_3151___p   1528 TATCAAGCATTTAT--AAACAA------TGAAAAG----------AATTC   1559

BSNT_05355___   1551 AGA------------------ACAAACAGATGAGGGGAGACACTTCCTGA   1582
                     |||                  .|||.|.||..|.||.|||||||||.|..
BPUM_3151___p   1560 AGAGCTGCTTGATGCACTCACTCAATCGGAAAAAGGCAGACACTTCATTT   1609

BSNT_05355___   1583 AGAACGTCCAT-----GAA-TTCTTGCAAGAATACGGATGGAGATCTGTT   1626
                     .||     |||     ||| ||||| ||||..||.||.|||.|||||||.
BPUM_3151___p   1610 CGA-----CATTAGAGGAATTTCTT-CAAGTTTATGGCTGGCGATCTGTG   1653

BSNT_05355___   1627 AAAAGTCATGATCTGATTGAACAAATCTGGGTGGAAAATCC---GTATTT   1673
                     |||||||||||.||.|..|||.|.|..|||||||||||.||   ||.|.|
BPUM_3151___p   1654 AAAAGTCATGACCTTACGGAAGAGACATGGGTGGAAAACCCTGAGTTTAT   1703

BSNT_05355___   1674 CGCTCTGGCT------------AATATTCAAAATTATGTCCGTAATGGCT   1711
                     |   ||.|.|            ||.||||||.|      ||..|.||   
BPUM_3151___p   1704 C---CTAGATATCATCAGAAGCAACATTCAACA------CCAAAGTG---   1741

BSNT_05355___   1712 ATCATTTTGACAATGAATTT-CAGAA------AACGAAAGAAAAACGAGA   1754
                        |||||||..|.|||||| ||.||      |.|.|||||.||  ||||
BPUM_3151___p   1742 ---ATTTTGATGAAGAATTTGCACAAGCCGTCATCAAAAGACAA--GAGA   1786

BSNT_05355___   1755 -----GAA-ATTATA-----CAA-TGAATTCTTGGAAAACATAGAAGATC   1792
                          ||| |||.||     ||| ||||     |||      .||||   
BPUM_3151___p   1787 CATATGAACATTTTATGAGCCAAGTGAA-----GGA------TGAAG---   1822

BSNT_05355___   1793 CCGGTTTGCGCACCG-AATTTGA-CCGCTATTATCAATGGACACTGAACT   1840
                       .||||  ..|.|| ||||||| .|.|| |||.||||...|.||..|..
BPUM_3151___p   1823 --CGTTT--AAAACGAAATTTGAGACACT-TTACCAATTTGCTCTACAGG   1867

BSNT_05355___   1841 CTGCAAATATAAAAGATGATCACCACTTTTATATTGACGCCATGCTGGAT   1890
                     ||||.|||||....||||||||.||||||||.|||||.||||||.|.|||
BPUM_3151___p   1868 CTGCTAATATCCGTGATGATCATCACTTTTACATTGATGCCATGTTAGAT   1917

BSNT_05355___   1891 GCCAAGGCGAGAATCTTTCTGCTGAAGATAGGTGAATTGCTGGCGGAAAA   1940
                     ||.||.||.|||.|.|.|||..|.|||||.||.|||.|.||.|...||||
BPUM_3151___p   1918 GCTAAAGCCAGAGTATATCTATTAAAGATTGGCGAACTTCTTGTACAAAA   1967

BSNT_05355___   1941 CGGTGTCA----TTCAAGATCGTGAGGACCTTTGGTTTTTATATGACGAC   1986
                     .||    |    |||...|||..||.||.||.||||.|.|.|   ||||.
BPUM_3151___p   1968 AGG----AACGCTTCCTCATCAAGAAGATCTATGGTATCTCT---ACGAT   2010

BSNT_05355___   1987 GAAGTGGAACA---AGCGCT-------TCTTCACCCTGT---------AT   2017
                     ||.|.||.|||   ||||||       |||.||.|.|.|         ||
BPUM_3151___p   2011 GAGGAGGTACACACAGCGCTCACAACGTCTACATCATTTGATACGGTCAT   2060

BSNT_05355___   2018 CCCTGCAAGAAAA---GGC-TGAAAAACGCAGACAGATTTTTCATGAGTA   2063
                     |.|...|||||||   |.| |||||                    |||.|
BPUM_3151___p   2061 CGCACAAAGAAAAATTGACATGAAA--------------------GAGAA   2090

BSNT_05355___   2064 TGAGCTGGC---CCAAGCCCCTGCCTACCTCGGCACCCCGACAAAAGAAC   2110
                     |||   .||   ||||.|.||.||.||..|.||||||||.||..|     
BPUM_3151___p   2091 TGA---AGCCATCCAACCACCAGCTTATATGGGCACCCCAACTGA-----   2132

BSNT_05355___   2111 AGCTCAA-AGCAGC-TGAAGAAATTG-----TCGGCGCTGTGATAGAGGA   2153
                     ||||.|| .||||| .|.|||||  |     ||||..|..|.|.|||..|
BPUM_3151___p   2133 AGCTGAATTGCAGCAAGTAGAAA--GAACGCTCGGTTCATTAAGAGAAAA   2180

BSNT_05355___   2154 TGAAAAAAACAC-AGAGA-ATCATATTTTTGGCATTGCGGCATCAAGCGG   2201
                     ||||||.||||| ||.|| ||  .||.|.|||.||||..|||||.|||||
BPUM_3151___p   2181 TGAAAACAACACAAGCGATAT--GATCTATGGAATTGGCGCATCTAGCGG   2228

BSNT_05355___   2202 CATTGCGACAGGTCCGGTGAAAATCATTCGGGAC----GCCAATGAATTT   2247
                     .||||...|.||....||.|||.|||||    ||    ||..|.|||||.
BPUM_3151___p   2229 TATTGTTTCTGGAAGAGTAAAAGTCATT----ACATGTGCTGAGGAATTC   2274

BSNT_05355___   2248 TCTCAATTCGCGCCT------GGGGACGTACTCGTTTGCAAGATGACCAC   2291
                     ||.|||||      |      |..||..|..|.||||||||.|..|||||
BPUM_3151___p   2275 TCACAATT------TCAAAAGGATGATATTTTAGTTTGCAAAACAACCAC   2318

BSNT_05355___   2292 ACCGCTATGGACCAGCCTGTTTCAAGACGCCAAAGCGATAATTACAGACA   2341
                     |||..|||||||.|||.|.|||..|||.||.|||||..|..|.||.||..
BPUM_3151___p   2319 ACCTTTATGGACGAGCTTATTTAGAGATGCAAAAGCAGTCGTAACCGATG   2368

BSNT_05355___   2342 CAGGCGGCATTTTGTCTCACGCTGCGATTATTGCCCGTGA--ATACGGCA   2389
                     |.||.||||||||.|||||..|.||.|||||.||..|.||  |||.|  |
BPUM_3151___p   2369 CTGGAGGCATTTTATCTCATTCAGCTATTATCGCAAGAGAGTATATG--A   2416

BSNT_05355___   2390 TTCCAGCCGTTCTCGGCACACGCACGGCAACCGAAAGACTGCGAGACGGT   2439
                     |.|||||.||.||.||.||.||.|..|||||.||||.|||.|.|..||||
BPUM_3151___p   2417 TGCCAGCTGTCCTAGGAACCCGAATAGCAACAGAAACACTTCAATCCGGT   2466

BSNT_05355___   2440 GACATCATCACTGTTGACGGTAGCAGCGG-------CA------AAATCA   2476
                     |||.|..|.||.||.||.||.||||..||       ||      |||.||
BPUM_3151___p   2467 GACCTTGTGACAGTAGATGGAAGCAATGGACGTATTCAGATATTAAAACA   2516

BSNT_05355___   2477 -----CAGTTGTC--AGCCGGTCCTGA   2496
                          ||..||||  |           
BPUM_3151___p   2517 GCATGCACGTGTCTAA-----------   2532


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