Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05355 and BPUM_3151
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_05355___yvkC.1.24716.seq
# -bsequence dna-align/BPUM_3151___ppsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05355___yvkC-BPUM_3151___ppsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05355___yvkC-BPUM_3151___ppsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05355___yvkC
# 2: BPUM_3151___ppsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2827
# Identity: 1628/2827 (57.6%)
# Similarity: 1628/2827 (57.6%)
# Gaps: 626/2827 (22.1%)
# Score: 4039.5
#
#
#=======================================
BSNT_05355___ 1 ATGTATTCTGTTTTATTTC--GCCAGGCAGAAGAGTCCAGC--CAGCTGG 46
||||||||.|||||||||| || |||.|||||.||| || || ||.|
BPUM_3151___p 1 ATGTATTCAGTTTTATTTCATGC--GGCTGAAGAATCC-GCATCA-CTCG 46
BSNT_05355___ 47 CTGGAGCAAAAGGAATGAATTTGATTAAATTGACCAAACACGGTCTTCCT 96
|.||.||||||||..|||||||.||.|||||.|.|||.|||||.||.||.
BPUM_3151___p 47 CAGGGGCAAAAGGCCTGAATTTAATCAAATTAAACAATCACGGCCTGCCA 96
BSNT_05355___ 97 GTTCCGGACGGGTTTATTATTCAAACGAA------TGC--GCTCGCACGT 138
||.||.||.||.||||||||..||||.|| |.| |||..| |
BPUM_3151___p 97 GTCCCAGATGGATTTATTATCAAAACCAACAGCTTTTCAAGCTTTC---T 143
BSNT_05355___ 139 TTTATGGAGGACAACCAGCTTC------AAGAGA--CTAG-TGAAAACGT 179
||.|| |..||||||.||.|| ||.|.| ||.| |||.||..|
BPUM_3151___p 144 TTCAT--ATCACAACCTGCATCCAACTGAACAAAACCTTGCTGACAAAAT 191
BSNT_05355___ 180 CGAAAGCGGGATCATTTCTGGAACATTTTCGGATG--AGCTGAAAGATGA 227
| ||||..|.|||.||| |.||.||..||| |||.||
BPUM_3151___p 192 C-AAAGAAGCATCGTTT------CCTTCTCAAATGGAAGCAGA------- 227
BSNT_05355___ 228 GCTGACTAGT----TCCTTTTATAAGC-TTA--GAGAATCATATCGATCC 270
|||..| |||||| .||.| ||| || ||.|.||||..||.
BPUM_3151___p 228 ----ACTTCTTTCGTCCTTT--CAATCATTACGGA-AAACTTATCCCTCA 270
BSNT_05355___ 271 GTAGCCGTGCGTTCTTCGTCTGCTTCGGAAGATTTAGAAGGCGCCTCATT 320
||.||.||..|.||.||.||||.|.|.||||||.|.||||||||||||||
BPUM_3151___p 271 GTTGCAGTCAGATCCTCTTCTGTTGCAGAAGATCTCGAAGGCGCCTCATT 320
BSNT_05355___ 321 CGCGGGTCAATATGAAACCTACTTAAATATCAAAACAGAGGAAGAGTTTC 370
.||.||.||.||.||.|||||.|||||||||||||||||.||||| .|||
BPUM_3151___p 321 TGCAGGACAGTACGAGACCTATTTAAATATCAAAACAGATGAAGA-ATTC 369
BSNT_05355___ 371 T----GGCTAAAGTGAAAGAATGCTGGGCCTCATTTTTTTCTGGGCGGGT 416
| |||| ||.||||||||.|||.|.||.|..|||...|.|.|.||
BPUM_3151___p 370 TTACAGGCT---GTCAAAGAATGTTGGTCTTCTTACTTTGGAGTGAGAGT 416
BSNT_05355___ 417 --CAGCAGCTATAAGAAAAAAATGAACAATCAAATCGCAGA------GCC 458
||| || ||||||.||.|.||| .||.|||.||..|| |||
BPUM_3151___p 417 AACAG-AG-TATAAGGAAGAGATG---GATGAAAACGAGGAAGAGATGCC 461
BSNT_05355___ 459 GTTAATGGGAATAGTCGTTCAGGGGCTGATCGATTCAGAAATGTCAGGTG 508
|.|.||||...|.||||||||.||..|||||.||||.||..|.||.||||
BPUM_3151___p 462 GCTCATGGCTGTTGTCGTTCAAGGATTGATCCATTCTGATGTCTCCGGTG 511
BSNT_05355___ 509 TTATCTTCAGCCGCAACCCTGTTA--CCCAT-------------GATGAT 543
|.|||||.|| ||..| ||||| .||||
BPUM_3151___p 512 TCATCTTTAG---------TGAGAATCCCATAACAGGAAAAACAAATGA- 551
BSNT_05355___ 544 AGAGAGCTTTTAATCA-GC-----GCCAGCTACGGGTTGGGTGAAGCTGT 587
|||.| || ||.||||||||..|.||.|||||..|
BPUM_3151___p 552 -----------AATGATGCTGACAGCAAGCTACGGACTAGGAGAAGCAAT 590
BSNT_05355___ 588 TGTTTCAGGAAGTGTTACCCCAGACACGTTCATTGTTA---ATAAA---- 630
.|||||.||...|||.||.||||||||.| |||||| |.|||
BPUM_3151___p 591 CGTTTCCGGGCTTGTGACACCAGACACAT---TTGTTATAGACAAAGAGA 637
BSNT_05355___ 631 ---TCTTCGTTTG-AGATTCA----GAAAGAAATAGGTGCAAAGGAAATC 672
| |||..||| |.|.||| |||.||||.||.|||| ||.||
BPUM_3151___p 638 CACT-TTCTATTGAAAAATCACTTGGAACGAAAGAGCTGCA----AATTC 682
BSNT_05355___ 673 TACATGGAGTCTGCGGC-AGAAGGAATTGCTGAAAAAGAAACGAGTGAAG 721
|.|.| |.| | ||||||..|...||||.|||.|..||..||.|
BPUM_3151___p 683 TTCCT----TAT----CAAGAAGGTGTCATTGAACAAGCAGTGACGGAGG 724
BSNT_05355___ 722 ACATGCGCAGCCGT---TTTTGCCTTACAGATGAACAAGTGATTGAATTG 768
|.||| ||.| || ||||||||.|..|||||.|||.|..|.|||.|.
BPUM_3151___p 725 AAATG-GCTG--GTCAGTTTTGCCTGAATGATGACCAACTAGTAGAAATC 771
BSNT_05355___ 769 GCTGAAATCACAAAAAAAACCGAAGACCTGTACGG--ATATCCTGTCGAT 816
.|..|.|||||.|||.||...||||..||.||.|| |||.| ||||||
BPUM_3151___p 772 ACGCACATCACCAAACAAGTAGAAGCACTTTATGGTCATAGC--GTCGAT 819
BSNT_05355___ 817 ATAGAATTTGGAATTGCTGAT----CATCAAATATACCTTCTGCAAGCTC 862
||.||||||||.||.||..|| ||| |.||..|.||.|||||..
BPUM_3151___p 820 ATCGAATTTGGGATAGCAAATGGCACAT----TTTATTTACTTCAAGCCA 865
BSNT_05355___ 863 GCCCGATTACAACCATTGATCAG----GACAAAAAGGCGGCAGAAGAA-- 906
|.|||||||| ..||| ..||||| ||.|||||.|||
BPUM_3151___p 866 GACCGATTAC--------CGCAGCTCTCTCAAAA--GCAGCAGATGAAAC 905
BSNT_05355___ 907 -----------------AAACGCAGCTTCATGATTACCGACACTGATATG 939
|||.||||| |.||| ||..||
BPUM_3151___p 906 AGTAGGGGCTTCTTTTCAAATGCAGC----------CAGAC---GAGCTG 942
BSNT_05355___ 940 AATGATTTCTGG--CTTAACATGGAGTCTAATATTGAAGGTCCGGTGAGT 987
.|.||||||||| ||.| |||||...|.||||....|||||....|||
BPUM_3151___p 943 CAGGATTTCTGGATCTCA--ATGGACGATCATATGCCGGGTCCAACAAGT 990
BSNT_05355___ 988 CCGTTATTTTCA--TCCTTCATCGTGCCGGCATTGGAATATGGCTTGAAG 1035
||..|.|||||| || |.|||.|.||.|||||..||...||..|||||
BPUM_3151___p 991 CCTCTCTTTTCAAGTC--TGATCATCCCAGCATTAAAAAGCGGTATGAAG 1038
BSNT_05355___ 1036 AAGAGCATG-----CAA----AAGTTTCCGATTGGTGTAGTTGTTGATGA 1076
||.| ||| .|| ||||..|.|||..|..|| ||.|.||
BPUM_3151___p 1039 AAAA--ATGGTGAAAAATATCAAGTGCCTGATCTGAATA----TTAAAGA 1082
BSNT_05355___ 1077 AGTAAAACTTTATCGCGGACATATTTATTCCAAAAACC-----------A 1115
..|.||.||.|||.|.||||||.|.||||| |..||| |
BPUM_3151___p 1083 TATCAAGCTCTATAGAGGACATCTGTATTC--ATCACCGTCACTGCCTGA 1130
BSNT_05355___ 1116 AG---GTGGACAGCAGCC--TCC---TTCTGAAGACTGCGGCAAA----- 1152
|| ||| |||.|||| .|| ||.|||.| |||
BPUM_3151___p 1131 AGCGAGTG--CAGAAGCCGTACCAGTTTTTGATG--------AAAGCTTA 1170
BSNT_05355___ 1153 ---GAGCTTTTCCCGATTTTATCGGAGCATATGTATGACATCATCAATCA 1199
|||.|.||.|||..|.||...||||.|||||||||.||..|..|..|
BPUM_3151___p 1171 TTTGAGTTATTTCCGCATCTAAGTGAGCGTATGTATGAAATTTTAGAGAA 1220
BSNT_05355___ 1200 CACATACCTCCCTTTTTACCGGACA--CTGGACCAGCTCGCACA------ 1241
.|..|.|.|.||||||||| ||.| ||||| ||.||.|
BPUM_3151___p 1221 AAATTTCTTTCCTTTTTAC--GAAAAGCTGGA-----TCTCAAAATAAAG 1263
BSNT_05355___ 1242 -AAC---TGAGCATACCGCAGAA------AGCGCACTGGATGCTTTTC-A 1280
||| |||.||| .|.|||| |.|| || ||| |
BPUM_3151___p 1264 GAACCGATGACCAT--TGAAGAAGCCATCATCG--------GC--TTCGA 1301
BSNT_05355___ 1281 AAAACTAAAGGCCTTTTATCTCAC-GGCTTATGAAGAGCACTTCAATATC 1329
|.||.||||.||.||||||.| || .||.|||||.||.||.||..||||.
BPUM_3151___p 1302 AGAATTAAAAGCTTTTTATAT-ACAAGCATATGATGATCATTTTGATATT 1350
BSNT_05355___ 1330 GTTTTCCCGCAAATCCTTTTAACA----------AACAAACTGCAAGCGA 1369
||..||||.|||.||.|||||.|| ||.|.| |||..|.||
BPUM_3151___p 1351 GTCATCCCTCAAGTCATTTTATCAGCTATGATTGAAGATA-TGCTTGTGA 1399
BSNT_05355___ 1370 TGTAT-CAGG---ACATTCA-AGGAGAGTCCGAAAACGCT-CATTTTTAT 1413
.|||| |.|| .||.||| |.|.|| |||.| || | ||
BPUM_3151___p 1400 CGTATACTGGTGATCAATCACAAGTGA-TCCTA-----CTGC------AT 1437
BSNT_05355___ 1414 GAGATGCTGACAGGAAAAATGAACAAATCACTGGAAACGGACCGTTGCTT 1463
||||||.|||.|||....|||||.||||||||.|||||.|| |
BPUM_3151___p 1438 GAGATGATGATAGGCGTGATGAATAAATCACTTGAAACAGA--------T 1479
BSNT_05355___ 1464 ATG--GCTATTTTCTATGG--AAG-------TTCAGGAGAACCCGAACCT 1502
|.| |||||.|..|.|.| ||| ||||.||.|| .||||.|
BPUM_3151___p 1480 AAGAAGCTATCTGATTTTGCAAAGAGTGTCCTTCAAGATAA--AGAACTT 1527
BSNT_05355___ 1503 TCT-GACCATTTTTGAAAACAACAAGCCTGAACAGCTCCAGGAGAAATT- 1550
|.| .|.|||||.| |||||| ||||.|| ||||
BPUM_3151___p 1528 TATCAAGCATTTAT--AAACAA------TGAAAAG----------AATTC 1559
BSNT_05355___ 1551 AGA------------------ACAAACAGATGAGGGGAGACACTTCCTGA 1582
||| .|||.|.||..|.||.|||||||||.|..
BPUM_3151___p 1560 AGAGCTGCTTGATGCACTCACTCAATCGGAAAAAGGCAGACACTTCATTT 1609
BSNT_05355___ 1583 AGAACGTCCAT-----GAA-TTCTTGCAAGAATACGGATGGAGATCTGTT 1626
.|| ||| ||| ||||| ||||..||.||.|||.|||||||.
BPUM_3151___p 1610 CGA-----CATTAGAGGAATTTCTT-CAAGTTTATGGCTGGCGATCTGTG 1653
BSNT_05355___ 1627 AAAAGTCATGATCTGATTGAACAAATCTGGGTGGAAAATCC---GTATTT 1673
|||||||||||.||.|..|||.|.|..|||||||||||.|| ||.|.|
BPUM_3151___p 1654 AAAAGTCATGACCTTACGGAAGAGACATGGGTGGAAAACCCTGAGTTTAT 1703
BSNT_05355___ 1674 CGCTCTGGCT------------AATATTCAAAATTATGTCCGTAATGGCT 1711
| ||.|.| ||.||||||.| ||..|.||
BPUM_3151___p 1704 C---CTAGATATCATCAGAAGCAACATTCAACA------CCAAAGTG--- 1741
BSNT_05355___ 1712 ATCATTTTGACAATGAATTT-CAGAA------AACGAAAGAAAAACGAGA 1754
|||||||..|.|||||| ||.|| |.|.|||||.|| ||||
BPUM_3151___p 1742 ---ATTTTGATGAAGAATTTGCACAAGCCGTCATCAAAAGACAA--GAGA 1786
BSNT_05355___ 1755 -----GAA-ATTATA-----CAA-TGAATTCTTGGAAAACATAGAAGATC 1792
||| |||.|| ||| |||| ||| .||||
BPUM_3151___p 1787 CATATGAACATTTTATGAGCCAAGTGAA-----GGA------TGAAG--- 1822
BSNT_05355___ 1793 CCGGTTTGCGCACCG-AATTTGA-CCGCTATTATCAATGGACACTGAACT 1840
.|||| ..|.|| ||||||| .|.|| |||.||||...|.||..|..
BPUM_3151___p 1823 --CGTTT--AAAACGAAATTTGAGACACT-TTACCAATTTGCTCTACAGG 1867
BSNT_05355___ 1841 CTGCAAATATAAAAGATGATCACCACTTTTATATTGACGCCATGCTGGAT 1890
||||.|||||....||||||||.||||||||.|||||.||||||.|.|||
BPUM_3151___p 1868 CTGCTAATATCCGTGATGATCATCACTTTTACATTGATGCCATGTTAGAT 1917
BSNT_05355___ 1891 GCCAAGGCGAGAATCTTTCTGCTGAAGATAGGTGAATTGCTGGCGGAAAA 1940
||.||.||.|||.|.|.|||..|.|||||.||.|||.|.||.|...||||
BPUM_3151___p 1918 GCTAAAGCCAGAGTATATCTATTAAAGATTGGCGAACTTCTTGTACAAAA 1967
BSNT_05355___ 1941 CGGTGTCA----TTCAAGATCGTGAGGACCTTTGGTTTTTATATGACGAC 1986
.|| | |||...|||..||.||.||.||||.|.|.| ||||.
BPUM_3151___p 1968 AGG----AACGCTTCCTCATCAAGAAGATCTATGGTATCTCT---ACGAT 2010
BSNT_05355___ 1987 GAAGTGGAACA---AGCGCT-------TCTTCACCCTGT---------AT 2017
||.|.||.||| |||||| |||.||.|.|.| ||
BPUM_3151___p 2011 GAGGAGGTACACACAGCGCTCACAACGTCTACATCATTTGATACGGTCAT 2060
BSNT_05355___ 2018 CCCTGCAAGAAAA---GGC-TGAAAAACGCAGACAGATTTTTCATGAGTA 2063
|.|...||||||| |.| ||||| |||.|
BPUM_3151___p 2061 CGCACAAAGAAAAATTGACATGAAA--------------------GAGAA 2090
BSNT_05355___ 2064 TGAGCTGGC---CCAAGCCCCTGCCTACCTCGGCACCCCGACAAAAGAAC 2110
||| .|| ||||.|.||.||.||..|.||||||||.||..|
BPUM_3151___p 2091 TGA---AGCCATCCAACCACCAGCTTATATGGGCACCCCAACTGA----- 2132
BSNT_05355___ 2111 AGCTCAA-AGCAGC-TGAAGAAATTG-----TCGGCGCTGTGATAGAGGA 2153
||||.|| .||||| .|.||||| | ||||..|..|.|.|||..|
BPUM_3151___p 2133 AGCTGAATTGCAGCAAGTAGAAA--GAACGCTCGGTTCATTAAGAGAAAA 2180
BSNT_05355___ 2154 TGAAAAAAACAC-AGAGA-ATCATATTTTTGGCATTGCGGCATCAAGCGG 2201
||||||.||||| ||.|| || .||.|.|||.||||..|||||.|||||
BPUM_3151___p 2181 TGAAAACAACACAAGCGATAT--GATCTATGGAATTGGCGCATCTAGCGG 2228
BSNT_05355___ 2202 CATTGCGACAGGTCCGGTGAAAATCATTCGGGAC----GCCAATGAATTT 2247
.||||...|.||....||.|||.||||| || ||..|.|||||.
BPUM_3151___p 2229 TATTGTTTCTGGAAGAGTAAAAGTCATT----ACATGTGCTGAGGAATTC 2274
BSNT_05355___ 2248 TCTCAATTCGCGCCT------GGGGACGTACTCGTTTGCAAGATGACCAC 2291
||.||||| | |..||..|..|.||||||||.|..|||||
BPUM_3151___p 2275 TCACAATT------TCAAAAGGATGATATTTTAGTTTGCAAAACAACCAC 2318
BSNT_05355___ 2292 ACCGCTATGGACCAGCCTGTTTCAAGACGCCAAAGCGATAATTACAGACA 2341
|||..|||||||.|||.|.|||..|||.||.|||||..|..|.||.||..
BPUM_3151___p 2319 ACCTTTATGGACGAGCTTATTTAGAGATGCAAAAGCAGTCGTAACCGATG 2368
BSNT_05355___ 2342 CAGGCGGCATTTTGTCTCACGCTGCGATTATTGCCCGTGA--ATACGGCA 2389
|.||.||||||||.|||||..|.||.|||||.||..|.|| |||.| |
BPUM_3151___p 2369 CTGGAGGCATTTTATCTCATTCAGCTATTATCGCAAGAGAGTATATG--A 2416
BSNT_05355___ 2390 TTCCAGCCGTTCTCGGCACACGCACGGCAACCGAAAGACTGCGAGACGGT 2439
|.|||||.||.||.||.||.||.|..|||||.||||.|||.|.|..||||
BPUM_3151___p 2417 TGCCAGCTGTCCTAGGAACCCGAATAGCAACAGAAACACTTCAATCCGGT 2466
BSNT_05355___ 2440 GACATCATCACTGTTGACGGTAGCAGCGG-------CA------AAATCA 2476
|||.|..|.||.||.||.||.||||..|| || |||.||
BPUM_3151___p 2467 GACCTTGTGACAGTAGATGGAAGCAATGGACGTATTCAGATATTAAAACA 2516
BSNT_05355___ 2477 -----CAGTTGTC--AGCCGGTCCTGA 2496
||..|||| |
BPUM_3151___p 2517 GCATGCACGTGTCTAA----------- 2532
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