Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05348 and BPUM_3147
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:57
# Commandline: needle
# -asequence dna-align/BSNT_05348___uvrA.1.24716.seq
# -bsequence dna-align/BPUM_3147___uvrA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05348___uvrA-BPUM_3147___uvrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05348___uvrA-BPUM_3147___uvrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05348___uvrA
# 2: BPUM_3147___uvrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2921
# Identity: 2176/2921 (74.5%)
# Similarity: 2176/2921 (74.5%)
# Gaps: 91/2921 ( 3.1%)
# Score: 7905.0
#
#
#=======================================
BSNT_05348___ 1 ATGGCTATGGATCGGATAGAGGTGAAGGGAGCCAGGGCGCATAACCTGAA 50
|||||||||||.||.|||||||||||.||.||.||.||.||.|||||.||
BPUM_3147___u 1 ATGGCTATGGAACGAATAGAGGTGAAAGGTGCTAGAGCCCACAACCTTAA 50
BSNT_05348___ 51 AAATATAGATGTGACGATTCCGAGAGATCAGCTTGTCGTTGTCACGGGTT 100
||||||.|||||||..||.||..|.||.|||.|.||.||..|||||||||
BPUM_3147___u 51 AAATATTGATGTGAATATCCCACGTGACCAGTTAGTGGTCATCACGGGTT 100
BSNT_05348___ 101 TGTCCGGATCAGGTAAATCCTCCCTTGCCTTTGACACGATATATGCTGAA 150
|.||.||.|||||.|||||.||.|||||.|||||.||.||.|||||.||.
BPUM_3147___u 101 TATCTGGTTCAGGAAAATCGTCTCTTGCTTTTGATACCATTTATGCAGAG 150
BSNT_05348___ 151 GGACAGAGACGGTATGTCGAGTCGCTGTCTGCCTATGCCCGCCAGTTTTT 200
||.|||.|..||||.||.||.||.||.||.||.|||||.|||||.|||.|
BPUM_3147___u 151 GGGCAGCGCAGGTACGTTGAATCTCTTTCAGCGTATGCGCGCCAATTTCT 200
BSNT_05348___ 201 AGGGCAAATGGATAAGCCGGATGTGGATGCAATTGAGGGGCTCTCTCCCG 250
.||.|||||||||||.||||||||.|||||.|||||.||.||.|||||.|
BPUM_3147___u 201 CGGTCAAATGGATAAACCGGATGTAGATGCCATTGAAGGTCTTTCTCCGG 250
BSNT_05348___ 251 CCATCAGCATTGATCAGAAAACAACGAGCCGCAATCCGAGGTCTACTGTC 300
|.||.||.|||||||||||.|||||||||||.||.||.||.||.||.|||
BPUM_3147___u 251 CGATTAGTATTGATCAGAAGACAACGAGCCGGAACCCTAGATCAACGGTC 300
BSNT_05348___ 301 GGTACGGTAACTGAGATTTATGATTATCTGCGTCTTTTATATGCGAGAGT 350
||.||.||.|||||.||.|||||||||.|.|||||.||.|||||..||||
BPUM_3147___u 301 GGAACAGTTACTGAAATCTATGATTATTTACGTCTCTTGTATGCTCGAGT 350
BSNT_05348___ 351 AGGGAAGCCTCATTGTCCGGAACACGGAATTGAGATTACATCCCAGACCA 400
.|||||.||...|||||||..||||||.|||||.|||||.|||||.||.|
BPUM_3147___u 351 TGGGAAACCGATTTGTCCGATACACGGGATTGAAATTACGTCCCAAACGA 400
BSNT_05348___ 401 TCGAGCAAATGGTGGACAGA----ATTCTGGAATACCCGGAACGGACGAA 446
|.|||||.|| |||||| |||.|.|||||.||.|||.|.|||||
BPUM_3147___u 401 TTGAGCAGAT----GACAGATCGCATTTTAGAATATCCAGAAAGAACGAA 446
BSNT_05348___ 447 GCTTCAGGTGCTGGCGCCGATTGTATCGGGCCGAAAAGGCGCTCATGTCA 496
..|.||.|||||.|||||..|.|||||.|||||.|||||..|.|||||||
BPUM_3147___u 447 ATTGCAAGTGCTTGCGCCAGTCGTATCTGGCCGCAAAGGGACACATGTCA 496
BSNT_05348___ 497 AAGTGCTTGAACAGATTAGGAAACAAGGCTATGTCAGAGTCAGAATTGAC 546
||||.|||||.||.|||.|.||.||.||||||||..||||.|||.|.||.
BPUM_3147___u 497 AAGTACTTGATCAAATTCGAAAGCAGGGCTATGTTCGAGTAAGAGTCGAT 546
BSNT_05348___ 547 GGCGAGATGGCTGAGCTTTCCGACGATATCGAATTAGAAAAGAACAAGAA 596
||.|||||||..||.||.||.||.||.|||||..|.||||||||||||||
BPUM_3147___u 547 GGAGAGATGGAAGATCTATCAGAAGAGATCGAGCTTGAAAAGAACAAGAA 596
BSNT_05348___ 597 GCATTCCATTGAGGTAGTCATTGACCGGATTGTCGTGAAAGAAGGCGTGG 646
||||||||||||.||.||.||.|||||.|||||.|||||.||||||||.|
BPUM_3147___u 597 GCATTCCATTGAAGTCGTGATCGACCGAATTGTGGTGAAGGAAGGCGTCG 646
BSNT_05348___ 647 CAGCCCGGCTGTCAGATTCATTGGAAACGGCGCTTCGTTTAAGTGAAGGA 696
|.||.||||||||.||.||..|.|||||||||||.||..||.|||||||.
BPUM_3147___u 647 CGGCTCGGCTGTCTGACTCTCTTGAAACGGCGCTGCGACTAGGTGAAGGC 696
BSNT_05348___ 697 CGGGTTATGATCGATGTCATCGGTGAGGAAGAGCTGATGTTCAGCGAGCA 746
||.||.|||||.||.||.||.||..|.||||||.||.|.|||||.||.||
BPUM_3147___u 697 CGTGTGATGATTGACGTGATTGGACAAGAAGAGTTGTTATTCAGTGAACA 746
BSNT_05348___ 747 TCATGCCTGTCCGCACTGCGGATTTTCAATTGGTGAACTTGAGCCGCGTC 796
||||||||||||||||||||||||.||.||||||||.||||||||..|..
BPUM_3147___u 747 TCATGCCTGTCCGCACTGCGGATTCTCTATTGGTGAGCTTGAGCCTAGAA 796
BSNT_05348___ 797 TGTTTTCGTTTAACAGTCCGTTCGGGGCGTGTCCGACGTGTGACGGTCTC 846
|||||||||||||.|||||.||.||.||.|||||||..|||||.||.||.
BPUM_3147___u 797 TGTTTTCGTTTAATAGTCCTTTTGGTGCCTGTCCGAGCTGTGATGGGCTT 846
BSNT_05348___ 847 GGAATGAAGCTTGAAGTGGATGCCGATCTTGTCATCCCCAATCAAGATTT 896
||....||.||.|||||.||..|.||.||||||.|.||.|||.|.|||||
BPUM_3147___u 847 GGCTCTAAACTAGAAGTTGACCCTGAGCTTGTCGTTCCTAATAAGGATTT 896
BSNT_05348___ 897 GTCATTGAAGG--AGAATGCGGTCGCCCCTTGGACACCGATCAGCTCACA 944
|.|.|| |.| ||.||||..|.|||||.|||...|||...||||||||
BPUM_3147___u 897 GACGTT--ACGCCAGCATGCCATTGCCCCATGGGAGCCGCAGAGCTCACA 944
BSNT_05348___ 945 ATATTATCCTCAGCTGCTTGAGGCAGCCTGCACCCACTACGGGATTGATA 994
|||.|||||||||||.||||||||||..||.||.||.||.||.||.||.|
BPUM_3147___u 945 ATACTATCCTCAGCTCCTTGAGGCAGTATGTACACATTATGGTATCGACA 994
BSNT_05348___ 995 TGGATGTGCCGGTCAAAGATTTGCCGAAGCATCAACTGGATAAAGTGCTG 1044
||||..|.||.||.||||||.|.|||..||||..|.|.||||||.|..|.
BPUM_3147___u 995 TGGACATTCCTGTGAAAGATATCCCGTCGCATTTATTCGATAAAATTTTA 1044
BSNT_05348___ 1045 TACGGCAGCGGAGATGACCTGATTTATTTCAGATATGAAAATGATTTTGG 1094
||.||.|||||...|||.|.|||||||||||.||||||||||||||||||
BPUM_3147___u 1045 TATGGAAGCGGCTCTGAACGGATTTATTTCAAATATGAAAATGATTTTGG 1094
BSNT_05348___ 1095 ACAAATCCGTGAAGGTGAAATTCAATTTGAAGGCGTATTGCGCAACATTG 1144
.||..|.||||||..|||||||.||||||||||.||..|.||.|||||||
BPUM_3147___u 1095 TCAGGTACGTGAAAATGAAATTGAATTTGAAGGTGTTCTACGTAACATTG 1144
BSNT_05348___ 1145 AAAGACGCTATAAGGAGACAGGCTCTGATTTCATCCGTGAGCAGATGGAG 1194
||.||||.|||||.||.||..||||.||||..||.||||||||.||||||
BPUM_3147___u 1145 AACGACGTTATAAAGAAACCAGCTCGGATTATATTCGTGAGCAAATGGAG 1194
BSNT_05348___ 1195 CAGTATATGTCTCAGAAGTCTTGTCCGACGTGCAAAGGCTATCGGTTAAA 1244
.|.||||||.|..|..||.|.||||||||.||.|||||.|||||..|.||
BPUM_3147___u 1195 AAATATATGGCGAACCAGCCATGTCCGACATGTAAAGGATATCGTCTGAA 1244
BSNT_05348___ 1245 GAAAGAGGCGCTTGCCGTACTGATTGACGGCCGCCACATCGGAAAAATTA 1294
.||||||.|||||||.||.|||||..|.|||...||.||.|||.||||.|
BPUM_3147___u 1245 AAAAGAGACGCTTGCGGTTCTGATCAATGGCAAACATATTGGAGAAATAA 1294
BSNT_05348___ 1295 CCGAGCTGTCTGTCGCCGACGCACTTGCCTTCTTTA-------AAAAC-- 1335
|.||..||||||||.|..|.||.|||| .|||| |||.|
BPUM_3147___u 1295 CTGATTTGTCTGTCTCTAATGCCCTTG----ATTTATATGGTCAAATCGA 1340
BSNT_05348___ 1336 CTTACCCTTTCTGAGAAGGATATGCAGATCGCCAATTTGATTTTGCGCGA 1385
.| |.||||||||.|||.|||||||.||..|..|.|||||.||.||
BPUM_3147___u 1341 GT-----TGTCTGAGAAAGATTTGCAGATTGCTCAGCTCATTTTACGTGA 1385
BSNT_05348___ 1386 AATTGTGGAGCGCTTAAGCTTTCTGGACAAAGTCGGCCTCGATTACCTGA 1435
|||....||||||||...|||..|..|.||.||.||..|.||||||||.|
BPUM_3147___u 1386 AATCAAAGAGCGCTTGTCCTTCTTAAATAATGTGGGATTAGATTACCTCA 1435
BSNT_05348___ 1436 CATTGAGCAGGGCAGCGGGTACATTGTCCGGGGGAGAGGCGCAGCGCATC 1485
||||.|||.|..|.||.||.|||.|.||.||.||||||||||||||.||.
BPUM_3147___u 1436 CATTAAGCCGCTCCGCTGGCACACTATCTGGAGGAGAGGCGCAGCGGATT 1485
BSNT_05348___ 1486 AGGCTGGCGACTCAAATTGGCTC--GCGCTTATCCGGTGTGCTTTATATT 1533
.|.|||||.||||||||.||.|| | |||.| |.|||||.||||||||.
BPUM_3147___u 1486 CGTCTGGCTACTCAAATCGGTTCAAG-GCTGA-CAGGTGTTCTTTATATA 1533
BSNT_05348___ 1534 TTAGATGAGCCGTCTATCGGTCTGCATCAGCGTGATAACGACCGCTTGAT 1583
||||||||.||.|||||.||||||||||||||||||||.|||||.|||||
BPUM_3147___u 1534 TTAGATGAACCATCTATTGGTCTGCATCAGCGTGATAATGACCGATTGAT 1583
BSNT_05348___ 1584 CAGCGCTCTGAAAAATATGAGAGACCTCGGGAACACGCTGATTGTTGTCG 1633
|.|..|..|||||||.|||.|.|||.|||||||.||.||.|||||.||||
BPUM_3147___u 1584 CGGGACATTGAAAAACATGCGCGACATCGGGAATACCCTCATTGTCGTCG 1633
BSNT_05348___ 1634 AACATGATGAGGACACGATGATGGCAGCAGATTATTTAATAGATATTGGA 1683
|.||||||||.||.||||||.|.||.||.||||||||.||.|||||||||
BPUM_3147___u 1634 AGCATGATGAAGATACGATGCTAGCCGCTGATTATTTGATTGATATTGGA 1683
BSNT_05348___ 1684 CCGGGAGCCGGTATTCACGGCGGACAGGTGATATCTGCGGGTACGCCGGA 1733
||.|||||.||..||||.||.|||.|.|||||.||.||.||.||.|||||
BPUM_3147___u 1684 CCTGGAGCAGGAGTTCATGGGGGAGAAGTGATTTCAGCTGGGACACCGGA 1733
BSNT_05348___ 1734 AGAAGTGATGGAAGATCCA--AACTCATTAAC-GGGCAGCTATTTATCAG 1780
||||||.|||.|.|| || ||.||.||||| ||.|| .||||||||.|
BPUM_3147___u 1734 AGAAGTCATGAAGGA--CAAGAAATCTTTAACAGGACA-ATATTTATCTG 1780
BSNT_05348___ 1781 GGGAAAAGTTTATCCCATTGCC--TCCTGAAAGAAGAAAGCCGGACGGAC 1828
|.||.||.|||||||||.|.|| || ||||||||||||||.||.||.|
BPUM_3147___u 1781 GAGAGAAATTTATCCCACTACCGATC--GAAAGAAGAAAGCCTGATGGCC 1828
BSNT_05348___ 1829 GTTACATTGAAATTAAAGGTGCTTCAGAAAACAACTTGAAAAAAGTGAAT 1878
|.||.||||||||.||||||||...||||||||||.|||||||.||.|||
BPUM_3147___u 1829 GCTATATTGAAATCAAAGGTGCAAAAGAAAACAACCTGAAAAACGTCAAT 1878
BSNT_05348___ 1879 GCCAAGTTCCCGCTTGGGACG--TTTACAGCAGTTACAGGTGTTTCCGGT 1926
||.||||||||.||.|| || ||||||||.||.||.||.||.||.|||
BPUM_3147___u 1879 GCGAAGTTCCCTCTAGG--CGTCTTTACAGCTGTGACTGGGGTGTCTGGT 1926
BSNT_05348___ 1927 TCAGGGAAGAGTACACTCGTTAATGAAATTTTGCAT--AAGGCGCTGGCG 1974
|||||.||.|||||.||.||.|||||||||.| || ||..|.||.|||
BPUM_3147___u 1927 TCAGGAAAAAGTACGCTTGTGAATGAAATTCT--ATTAAAATCACTTGCG 1974
BSNT_05348___ 1975 CAAAAGCTTCATAAAGCGAAAGCGAAGCCCGG-CAGCCATAAAGAGATTA 2023
|||||.|||||.|.|||.||.||||||||.|| || .||.|||||.||.|
BPUM_3147___u 1975 CAAAAACTTCACAGAGCAAAGGCGAAGCCAGGACA-ACACAAAGAAATCA 2023
BSNT_05348___ 2024 AAGGTTTGGATCATTTAGACAAAGTCATTGACATTGACCAGGCGCCAATT 2073
||||..|||||||||||||.||.||.|||||.|||||.||..|.|||||.
BPUM_3147___u 2024 AAGGAATGGATCATTTAGATAAGGTGATTGATATTGATCAATCTCCAATC 2073
BSNT_05348___ 2074 GGAAGAACGCCGAGATCCAACCCTGCGACATACACCGGTGTATTTGATGA 2123
||..|.|||||.||||||||||||||.||.||.||.||||||||||||||
BPUM_3147___u 2074 GGTCGTACGCCAAGATCCAACCCTGCCACGTATACAGGTGTATTTGATGA 2123
BSNT_05348___ 2124 CATTCGTGATGTATTCGCGCAGACAAATGAAGCGAAGGTCCGCGGCTATA 2173
..|.||.|||||.||.||.||.||.||||||||.|||||.||.||.||||
BPUM_3147___u 2124 TGTGCGAGATGTGTTTGCACAAACCAATGAAGCCAAGGTACGAGGGTATA 2173
BSNT_05348___ 2174 AAAAAGGCCGTTTCAGCTTCAACGTGAAGGGCGGACGATGTGAAGCCTGC 2223
||||||||.|.||||||||.|||||.||.||.|||||.||.||.||.||.
BPUM_3147___u 2174 AAAAAGGCAGATTCAGCTTTAACGTCAAAGGTGGACGCTGCGAGGCATGT 2223
BSNT_05348___ 2224 CGCGGAGACGGGATTATTAAAATTGAAATGCACTTCCTTCCTGACGTATA 2273
||||||||.||.||.||||||||.|||||||||||..|.|||||.||.||
BPUM_3147___u 2224 CGCGGAGATGGCATCATTAAAATCGAAATGCACTTTTTACCTGATGTGTA 2273
BSNT_05348___ 2274 CGTTCCATGCGAGGTGTGTCACGGCAAACGCTATAACCGTGAAACGCTTG 2323
.||.||.||.||||||||.|||||.|||||.||||||||.||.||.||||
BPUM_3147___u 2274 TGTGCCTTGTGAGGTGTGCCACGGGAAACGGTATAACCGGGAGACACTTG 2323
BSNT_05348___ 2324 AAGTGACGTACAAAGGAAAAAGCATCTCTGATGTGCTTGATATGACGGTT 2373
|.||.||.||.|||||.||||.|||..|||||||.|||||.|||||.||.
BPUM_3147___u 2324 AGGTCACATATAAAGGGAAAAACATTGCTGATGTACTTGAAATGACTGTG 2373
BSNT_05348___ 2374 GAAGATGCTCTTCCTTTCTTTGAAAATATCCCGAAAATCAAACGCAAGCT 2423
||.||.||.||.|..||.||.||.||.|||||||||||.||.||.|||||
BPUM_3147___u 2374 GAGGACGCACTCCAATTTTTCGAGAACATCCCGAAAATTAAGCGGAAGCT 2423
BSNT_05348___ 2424 CCAAACCCTTTATGATGTTGGTTTAGGTTATATTACGCTCGGCCAGCCGG 2473
.|||||..|||.||||||.||..||||.||.|||||.||.||.|||||.|
BPUM_3147___u 2424 TCAAACGATTTTTGATGTCGGACTAGGGTACATTACACTTGGACAGCCTG 2473
BSNT_05348___ 2474 CGACGACCTTGTCAGGCGGAGAAGCGCAGCGCGTGAAGCTCGCGTCAGAG 2523
|||||||.|||||.||.|||||.||||||||.|||||..|.||.||.|||
BPUM_3147___u 2474 CGACGACATTGTCTGGAGGAGAGGCGCAGCGTGTGAAATTGGCATCTGAG 2523
BSNT_05348___ 2524 CTGCACAAACGCTCGACCGGACGCACGCTCTACATTTTAGATGAGCCGAC 2573
||.||....||.||.|.||||.|..|.||.||.||||||||.||||||||
BPUM_3147___u 2524 CTTCATCGTCGTTCAAACGGAAGGTCTCTTTATATTTTAGACGAGCCGAC 2573
BSNT_05348___ 2574 GACAGGTTTGCATGTCGACGATATCGCCAGGCTTCTT-GTCGTGCTGCAA 2622
.||||||.|||||||.||.|||||.||| .|.||.|| ...|||||.||.
BPUM_3147___u 2574 AACAGGTCTGCATGTGGATGATATTGCC-CGTTTATTAAAAGTGCTTCAG 2622
BSNT_05348___ 2623 CGGTTGGTAGACAACGGAGACACTGTACTGGTTATTGAGCACAACCTTGA 2672
||.|||||.||.||||||||.||.|||||.||.||||||||.||.|||||
BPUM_3147___u 2623 CGTTTGGTCGAAAACGGAGATACGGTACTAGTGATTGAGCATAATCTTGA 2672
BSNT_05348___ 2673 TATCATTAAGACGGCCGATTACATTGTGGATTTGGGCCCGGAAGGCGGAG 2722
|||.||.|||.|.||.||||||.|.||.|||.|.||.||.||.|||||.|
BPUM_3147___u 2673 TATTATCAAGGCTGCTGATTACCTCGTTGATCTCGGACCAGAGGGCGGTG 2722
BSNT_05348___ 2723 CCGGGGGCGGAACCATTGTCGCGTCTGGAACGCCTGAGGAAATCACTG-A 2771
|.||.||||||||.||..|.||.|||||.||.||.|||.|.|| || |
BPUM_3147___u 2723 CAGGCGGCGGAACGATCATTGCCTCTGGGACTCCAGAGCAGAT---TGCA 2769
BSNT_05348___ 2772 AGTTGAAGAA------TCGTATACAGGCCGTTATTTGAAGCCTGTTATCG 2815
| ||||| ||.||.||.||.||.||.||.|||||..||.|.|
BPUM_3147___u 2770 A----AAGAAAAAGCTTCTTACACTGGTCGATACTTAAAGCCGATTTTAG 2815
BSNT_05348___ 2816 AACGTGAC---AAAGCACGCATGAAATCGCTCTTGAAAGCGAAAGAAACA 2862
|.|||||| || |||.||.|||..|.| ||..|||||||||
BPUM_3147___u 2816 AGCGTGACCGTAA---ACGAATAAAACAGTT------AGTCAAAGAAACA 2856
BSNT_05348___ 2863 G---------CTACATCTTAA 2874
| ||.||||.|||
BPUM_3147___u 2857 GAAAGTGTGACTTCATCATAA 2877
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