Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05343 and BPUM_3145
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:56
# Commandline: needle
# -asequence dna-align/BSNT_05343___yvlA.1.24716.seq
# -bsequence dna-align/BPUM_3145.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05343___yvlA-BPUM_3145.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05343___yvlA-BPUM_3145.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05343___yvlA
# 2: BPUM_3145
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 390
# Identity: 213/390 (54.6%)
# Similarity: 213/390 (54.6%)
# Gaps: 117/390 (30.0%)
# Score: 532.0
#
#
#=======================================
BSNT_05343___ 1 TTGAACCGTAATCAAGCTATTATTGCATCACTTTGTTATTTCAGTG---T 47
.||||..|..||||..|.||.|||||||||.||||||||||.|||| |
BPUM_3145 1 ATGAATAGAGATCAGTCGATCATTGCATCAATTTGTTATTTTAGTGTATT 50
BSNT_05343___ 48 GTTCATTGCGCCAATCATTGTGCCGATTGTCGCTTATTTTGTTGT----- 92
.||||| ||||.|.|||||.||.||.||.||.||||||||.||
BPUM_3145 51 TTTCAT---GCCATTTATTGTACCAATCGTGGCATATTTTGTAGTCGACC 97
BSNT_05343___ 93 AAATGAGAAA--GAAACAAAACGCCATGCGATACGCTCCCTTAT--TTCT 138
||| ||.|| |||||...|||||.|||| .|| || |..|
BPUM_3145 98 AAA--AGGAACCGAAACGGCACGCCTTGCG---GGC------ATTGTGGT 136
BSNT_05343___ 139 CACATAGTTCCGTTT-----GTCG------GCTGGCTGTTCCTTTTT--- 174
||||| |||| |||| ||..|.||.||.|||||
BPUM_3145 137 CACAT------GTTTTGCCAGTCGCAGCGTGCGTGTTGCTCGTTTTTGGG 180
BSNT_05343___ 175 --------ATTGCTTTACTTGGC------GG--AG-------CCGTTGCG 201
||| |||| |||.| || || |...|||.
BPUM_3145 181 TCTATCCCATT--TTTA-TTGTCAACACAGGCAAGTGACTCACTCATGCC 227
BSNT_05343___ 202 ATTGATGGAGA----CAGCTTGCTTCCTGTATTTGTAATC---ATTGGGG 244
|.||||...|| ||.|||| ||| |||.||.|| ||||
BPUM_3145 228 AGTGATCACGATGCTCATCTTG--TCC----TTTTTAGTCGCTATTG--- 268
BSNT_05343___ 245 GAGCGGTTATTTATTTCTTGGTTGTCATTGGCATTATCATTTGGAATGTG 294
|.||.||.||.|| |.|||||||||||.|.
BPUM_3145 269 ----GCTTTTTGATCTC-----------------TGTCATTTGGAATATC 297
BSNT_05343___ 295 ATTCAGGGCATTAAGGTCCTGC-GTGCAGCATAA------ 327
|||||.||.|||||.||.||.| .|.||.|| ||
BPUM_3145 298 ATTCAAGGTATTAAAGTACTTCAATCCATCA-AATCGTAG 336
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